Wall clock time and date at job start Tue Mar 31 2020 12:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38259 * 119.99956 * 2 1 4 4 C 1.38207 * 119.99947 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00183 * 359.74654 * 4 3 2 6 6 C 1.38210 * 119.99803 * 0.50401 * 5 4 3 7 7 C 1.50700 * 120.00269 * 179.76704 * 6 5 4 8 8 C 1.50696 * 109.47245 * 269.73001 * 7 6 5 9 9 O 1.21281 * 120.00313 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99832 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99775 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47082 * 179.72739 * 11 10 8 13 13 H 1.08995 * 109.68114 * 59.26086 * 12 11 10 14 14 C 1.53297 * 109.68155 * 179.78145 * 12 11 10 15 15 O 1.42957 * 109.22074 * 172.02246 * 14 12 11 16 16 C 1.42964 * 114.17007 * 297.41884 * 15 14 12 17 17 C 1.53291 * 109.22276 * 62.58176 * 16 15 14 18 18 N 1.47153 * 109.68004 * 298.70453 * 12 11 10 19 19 C 1.36937 * 120.98244 * 9.72298 * 18 12 11 20 20 H 1.08003 * 120.00255 * 328.98547 * 19 18 12 21 21 C 1.38814 * 120.00143 * 148.98057 * 19 18 12 22 22 N 1.31621 * 120.00083 * 349.12592 * 21 19 18 23 23 Si 1.86795 * 120.00174 * 169.12119 * 21 19 18 24 24 H 1.48499 * 109.47246 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47284 * 120.00241 * 23 21 19 26 26 H 1.48506 * 109.47408 * 240.00425 * 23 21 19 27 27 C 1.38218 * 120.00060 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47331 * 270.01880 * 1 2 3 29 29 H 1.08998 * 109.47344 * 30.02884 * 1 2 3 30 30 H 1.09010 * 109.47200 * 150.02178 * 1 2 3 31 31 H 1.08000 * 119.99765 * 359.97438 * 3 2 1 32 32 H 1.08004 * 119.99916 * 180.02562 * 4 3 2 33 33 H 1.08001 * 120.00451 * 180.27765 * 5 4 3 34 34 H 1.09005 * 109.47496 * 149.72355 * 7 6 5 35 35 H 1.09005 * 109.47223 * 29.73078 * 7 6 5 36 36 H 0.96994 * 120.00262 * 359.72442 * 10 8 7 37 37 H 1.09002 * 109.46910 * 299.72759 * 11 10 8 38 38 H 1.09002 * 109.46961 * 59.72842 * 11 10 8 39 39 H 1.08997 * 109.51510 * 291.95114 * 14 12 11 40 40 H 1.09005 * 109.51083 * 52.05117 * 14 12 11 41 41 H 1.09000 * 109.51095 * 182.50452 * 16 15 14 42 42 H 1.09000 * 109.51014 * 302.65478 * 16 15 14 43 43 H 1.09005 * 109.68368 * 67.41701 * 17 16 15 44 44 H 1.08997 * 109.68392 * 187.94099 * 17 16 15 45 45 H 0.96998 * 120.00463 * 179.97438 * 22 21 19 46 46 H 1.08000 * 119.99828 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0064 6 6 3.5807 -1.1969 0.0011 7 6 4.3341 -2.5020 0.0022 8 6 4.5859 -2.9379 -1.4182 9 8 4.1926 -2.2557 -2.3407 10 7 5.2490 -4.0854 -1.6635 11 6 5.4932 -4.5094 -3.0444 12 6 6.2647 -5.8306 -3.0433 13 1 5.6889 -6.5915 -2.5166 14 6 6.5182 -6.2816 -4.4863 15 8 7.3947 -7.4110 -4.4793 16 6 8.6904 -7.1430 -3.9377 17 6 8.5482 -6.7361 -2.4667 18 7 7.5651 -5.6446 -2.3801 19 6 7.8520 -4.4896 -1.7026 20 1 7.4183 -3.5537 -2.0227 21 6 8.7002 -4.5217 -0.6042 22 7 9.0579 -5.6759 -0.0824 23 14 9.3341 -2.9268 0.1333 24 1 8.7881 -1.7766 -0.6310 25 1 8.9003 -2.8298 1.5502 26 1 10.8176 -2.9061 0.0673 27 6 2.1981 -1.1970 0.0005 28 1 -0.3634 0.0003 1.0277 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3634 -0.8903 -0.5135 31 1 1.6582 2.1326 -0.0004 32 1 4.1204 2.1327 0.0010 33 1 5.3517 0.0000 0.0113 34 1 3.7449 -3.2614 0.5163 35 1 5.2864 -2.3714 0.5164 36 1 5.5676 -4.6286 -0.9259 37 1 4.5406 -4.6453 -3.5566 38 1 6.0778 -3.7477 -3.5604 39 1 5.5726 -6.5575 -4.9530 40 1 6.9770 -5.4672 -5.0471 41 1 9.3074 -8.0387 -4.0097 42 1 9.1579 -6.3321 -4.4963 43 1 8.2027 -7.5885 -1.8817 44 1 9.5107 -6.3951 -2.0854 45 1 9.6509 -5.6984 0.6849 46 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754970955.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:24 Heat of formation + Delta-G solvation = -53.789760 kcal Electronic energy + Delta-G solvation = -27155.204547 eV Core-core repulsion = 23430.526417 eV Total energy + Delta-G solvation = -3724.678130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.09469 -40.24299 -39.56209 -36.93721 -35.28592 -34.41535 -33.31636 -32.85419 -32.11657 -29.30437 -28.80008 -27.69698 -26.55046 -25.23819 -23.51288 -23.00259 -22.01131 -21.43160 -20.84411 -18.76773 -17.74184 -17.63512 -17.45898 -17.14268 -16.64588 -16.44627 -16.24279 -15.98766 -15.57556 -15.43816 -15.32470 -14.99661 -14.66536 -14.47969 -14.18203 -14.05339 -13.82805 -13.66059 -13.23632 -13.08528 -12.92058 -12.75396 -12.73421 -12.69914 -12.47388 -12.12340 -12.00775 -11.94864 -11.85924 -11.84723 -11.30943 -10.97047 -10.63149 -10.56386 -9.83909 -9.68051 -9.47370 -8.62411 -7.86911 -5.37888 0.42649 0.50402 1.39234 1.46614 1.52641 1.74852 2.36086 2.46239 2.91611 3.04063 3.29470 3.44379 3.70486 3.90141 4.03303 4.06170 4.07953 4.23341 4.24414 4.33824 4.37120 4.47209 4.48661 4.60092 4.62789 4.63756 4.64780 4.65927 4.75272 4.82242 4.86253 4.99169 5.00518 5.11283 5.19881 5.30395 5.31643 5.55938 5.58617 5.64669 5.67614 5.70068 5.71186 6.14989 6.29222 6.37385 6.72975 7.10998 7.37102 7.76553 8.32871 9.17659 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015267 B = 0.003788 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.622483 B = 7390.701605 C = 8743.934235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.095 4.095 3 C -0.130 4.130 4 C -0.122 4.122 5 C -0.138 4.138 6 C -0.069 4.069 7 C -0.101 4.101 8 C 0.511 3.489 9 O -0.587 6.587 10 N -0.698 5.698 11 C 0.143 3.857 12 C 0.127 3.873 13 H 0.039 0.961 14 C 0.057 3.943 15 O -0.397 6.397 16 C 0.046 3.954 17 C 0.149 3.851 18 N -0.606 5.606 19 C -0.240 4.240 20 H 0.068 0.932 21 C -0.031 4.031 22 N -0.926 5.926 23 Si 0.942 3.058 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.295 1.295 27 C -0.122 4.122 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.145 0.855 32 H 0.139 0.861 33 H 0.112 0.888 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.412 0.588 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.117 0.883 40 H 0.047 0.953 41 H 0.105 0.895 42 H 0.042 0.958 43 H 0.007 0.993 44 H 0.066 0.934 45 H 0.250 0.750 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.537 6.518 0.062 14.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.140 4.140 5 C -0.156 4.156 6 C -0.070 4.070 7 C -0.141 4.141 8 C 0.298 3.702 9 O -0.468 6.468 10 N -0.348 5.348 11 C 0.019 3.981 12 C 0.021 3.979 13 H 0.056 0.944 14 C -0.022 4.022 15 O -0.316 6.316 16 C -0.032 4.032 17 C 0.024 3.976 18 N -0.332 5.332 19 C -0.370 4.370 20 H 0.085 0.915 21 C -0.227 4.227 22 N -0.572 5.572 23 Si 0.771 3.229 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.223 1.223 27 C -0.140 4.140 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.163 0.837 32 H 0.157 0.843 33 H 0.130 0.870 34 H 0.143 0.857 35 H 0.121 0.879 36 H 0.249 0.751 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.135 0.865 40 H 0.066 0.934 41 H 0.123 0.877 42 H 0.061 0.939 43 H 0.025 0.975 44 H 0.084 0.916 45 H 0.059 0.941 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.765 6.770 -0.527 14.459 hybrid contribution 1.408 0.561 1.037 1.836 sum -11.357 7.332 0.510 13.528 Atomic orbital electron populations 1.20814 0.89093 1.03476 1.03214 1.20264 0.97656 0.92775 0.98850 1.21324 0.94042 0.98445 1.01001 1.21346 0.95052 0.97935 0.99699 1.21170 0.99854 0.93058 1.01515 1.19438 0.94202 0.93734 0.99613 1.20699 1.02868 0.96753 0.93775 1.20809 0.77229 0.80426 0.91690 1.90638 1.53787 1.54932 1.47453 1.46032 1.55405 1.23868 1.09506 1.21071 0.98484 0.95045 0.83520 1.21543 0.87387 0.94803 0.94202 0.94362 1.22990 0.94827 0.88915 0.95446 1.87804 1.24943 1.35759 1.83057 1.23223 0.84264 1.00905 0.94825 1.21238 0.94504 0.89543 0.92342 1.44309 1.10743 1.16514 1.61598 1.19298 1.25810 0.86588 1.05342 0.91469 1.25585 1.02107 0.98024 0.97005 1.70100 1.38313 1.24399 1.24363 0.85596 0.77779 0.81092 0.78391 1.20270 1.21144 1.22253 1.21073 0.93067 0.98719 1.01103 0.89887 0.90390 0.91356 0.83722 0.84350 0.87037 0.85741 0.87914 0.75102 0.90412 0.93592 0.86472 0.93421 0.87743 0.93921 0.97459 0.91594 0.94055 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 10.01 71.24 0.71 -1.02 16 2 C -0.10 -2.20 5.88 -19.86 -0.12 -2.32 16 3 C -0.13 -2.91 9.70 22.27 0.22 -2.70 16 4 C -0.12 -3.07 10.05 22.27 0.22 -2.85 16 5 C -0.14 -4.11 9.70 22.27 0.22 -3.89 16 6 C -0.07 -2.07 4.37 -19.87 -0.09 -2.16 16 7 C -0.10 -3.00 5.83 29.10 0.17 -2.83 16 8 C 0.51 18.52 7.82 87.65 0.69 19.20 16 9 O -0.59 -24.92 16.03 -3.03 -0.05 -24.97 16 10 N -0.70 -25.38 3.80 -463.05 -1.76 -27.14 16 11 C 0.14 5.15 4.44 86.38 0.38 5.54 16 12 C 0.13 4.77 3.20 44.97 0.14 4.91 16 13 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 14 C 0.06 1.87 6.29 72.08 0.45 2.33 16 15 O -0.40 -14.51 10.74 -148.98 -1.60 -16.11 16 16 C 0.05 1.68 6.98 72.08 0.50 2.19 16 17 C 0.15 6.74 5.38 86.35 0.46 7.20 16 18 N -0.61 -27.45 3.03 -673.72 -2.04 -29.49 16 19 C -0.24 -11.73 7.11 84.03 0.60 -11.13 16 20 H 0.07 3.37 5.81 -2.91 -0.02 3.35 16 21 C -0.03 -1.55 5.06 84.86 0.43 -1.12 16 22 N -0.93 -49.84 11.13 21.65 0.24 -49.60 16 23 Si 0.94 42.26 29.57 68.60 2.03 44.28 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 27 C -0.12 -3.23 9.36 22.27 0.21 -3.02 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 30 H 0.07 1.05 8.09 -2.38 -0.02 1.03 16 31 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 33 H 0.11 3.35 8.06 -2.91 -0.02 3.33 16 34 H 0.12 2.96 8.09 -2.38 -0.02 2.94 16 35 H 0.10 3.03 8.08 -2.38 -0.02 3.01 16 36 H 0.41 15.55 7.38 -92.71 -0.68 14.86 16 37 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.05 1.85 7.53 -2.39 -0.02 1.83 16 39 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 40 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 44 H 0.07 3.33 6.32 -2.39 -0.02 3.31 16 45 H 0.25 13.24 8.31 -92.71 -0.77 12.47 16 46 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -63.44 371.86 2.31 -61.13 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.29 Total: 33.57 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 5.20 Total: 8.33 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -3.56 Total: -106.23 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -1.65 Total: -41.08 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -63.44 2.31 -61.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754970955.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.337 kcal (2) G-P(sol) polarization free energy of solvation -63.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds