Wall clock time and date at job start Tue Mar 31 2020 11:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00345 * 2 1 4 4 H 1.48501 * 109.46978 * 274.93397 * 3 2 1 5 5 H 1.48491 * 109.47090 * 34.93132 * 3 2 1 6 6 H 1.48493 * 109.47279 * 154.93765 * 3 2 1 7 7 C 1.38816 * 119.99388 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00442 * 354.93823 * 7 2 1 9 9 N 1.36936 * 119.99729 * 174.93577 * 7 2 1 10 10 C 1.46500 * 120.00171 * 185.08496 * 9 7 2 11 11 C 1.53005 * 109.52371 * 65.29230 * 10 9 7 12 12 O 1.42902 * 109.46804 * 305.08220 * 11 10 9 13 13 C 1.53041 * 109.47049 * 305.22680 * 10 9 7 14 14 C 1.53034 * 109.54024 * 301.36773 * 13 10 9 15 15 C 1.53199 * 109.33816 * 298.68202 * 14 13 10 16 16 N 1.46919 * 108.77333 * 54.61770 * 15 14 13 17 17 C 1.34782 * 120.62970 * 126.37377 * 16 15 14 18 18 O 1.21280 * 119.99564 * 354.25804 * 17 16 15 19 19 C 1.50695 * 119.99998 * 174.25921 * 17 16 15 20 20 C 1.50284 * 109.47020 * 304.38425 * 19 17 16 21 21 C 1.32274 * 121.59159 * 303.36539 * 20 19 17 22 22 C 1.45201 * 123.03621 * 0.93969 * 21 20 19 23 23 C 1.32933 * 125.20525 * 319.60780 * 22 21 20 24 24 C 1.45209 * 125.19622 * 359.97438 * 23 22 21 25 25 C 1.32299 * 123.01914 * 40.43249 * 24 23 22 26 26 C 1.46928 * 118.74094 * 306.39287 * 16 15 14 27 27 H 0.97004 * 119.99528 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00298 * 5.08422 * 9 7 2 29 29 H 1.09001 * 109.46791 * 65.08090 * 11 10 9 30 30 H 1.08997 * 109.46933 * 185.08724 * 11 10 9 31 31 H 0.96700 * 113.99447 * 179.97438 * 12 11 10 32 32 H 1.09000 * 109.43347 * 181.35847 * 13 10 9 33 33 H 1.09001 * 109.48452 * 61.40111 * 13 10 9 34 34 H 1.08999 * 109.50083 * 178.71358 * 14 13 10 35 35 H 1.09003 * 109.49991 * 58.64795 * 14 13 10 36 36 H 1.09001 * 109.58702 * 174.40660 * 15 14 13 37 37 H 1.09004 * 109.58592 * 294.83399 * 15 14 13 38 38 H 1.09001 * 109.46978 * 64.36844 * 19 17 16 39 39 H 1.08000 * 119.20235 * 123.31926 * 20 19 17 40 40 H 1.08001 * 118.47272 * 180.98163 * 21 20 19 41 41 H 1.08005 * 117.39282 * 139.58807 * 22 21 20 42 42 H 1.08004 * 117.40633 * 179.97438 * 23 22 21 43 43 H 1.08000 * 118.48935 * 220.45486 * 24 23 22 44 44 H 1.08002 * 119.19974 * 179.00404 * 25 24 23 45 45 H 1.09005 * 109.58601 * 173.39966 * 26 16 15 46 46 H 1.09003 * 109.58679 * 293.67822 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3935 2.1065 -1.3949 5 1 1.5039 2.6202 0.8016 6 1 3.5961 1.4122 0.5930 7 6 2.0102 -1.2023 0.0005 8 1 1.4733 -2.1357 0.0835 9 7 3.3755 -1.2047 -0.1041 10 6 4.0994 -2.4735 -0.2158 11 6 3.7301 -3.1587 -1.5331 12 8 2.3106 -3.3025 -1.6135 13 6 3.7206 -3.3818 0.9562 14 6 4.0601 -2.6839 2.2752 15 6 5.5678 -2.4191 2.3355 16 7 5.9645 -1.6688 1.1363 17 6 6.6427 -0.5091 1.2449 18 8 6.8405 -0.0224 2.3380 19 6 7.1552 0.1827 0.0081 20 6 8.0211 -0.7648 -0.7735 21 6 9.0779 -1.3461 -0.2303 22 6 9.4736 -1.1373 1.1510 23 6 9.4412 0.0281 1.7897 24 6 9.0053 1.2871 1.2123 25 6 7.9615 1.3872 0.4056 26 6 5.6075 -2.2064 -0.1837 27 1 -0.4849 0.8401 -0.0004 28 1 3.8635 -0.3664 -0.1044 29 1 4.0819 -2.5534 -2.3685 30 1 4.1978 -4.1423 -1.5745 31 1 2.0040 -3.7299 -2.4249 32 1 4.2776 -4.3160 0.8858 33 1 2.6518 -3.5930 0.9218 34 1 3.7691 -3.3217 3.1097 35 1 3.5219 -1.7379 2.3354 36 1 5.8009 -1.8349 3.2258 37 1 6.1044 -3.3674 2.3673 38 1 6.3126 0.4969 -0.6080 39 1 7.7742 -0.9768 -1.8033 40 1 9.6743 -2.0060 -0.8430 41 1 9.8216 -1.9975 1.7037 42 1 9.7650 0.0395 2.8200 43 1 9.5587 2.1830 1.4522 44 1 7.6818 2.3580 0.0237 45 1 5.8668 -1.4818 -0.9557 46 1 6.1492 -3.1360 -0.3584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755083446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:08 Heat of formation + Delta-G solvation = 2.867322 kcal Electronic energy + Delta-G solvation = -29086.002675 eV Core-core repulsion = 25363.781381 eV Total energy + Delta-G solvation = -3722.221295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.67900 -38.62131 -36.98887 -35.60946 -33.84923 -32.95295 -32.31138 -31.71361 -31.22049 -29.30332 -26.78694 -25.37056 -24.87554 -23.64369 -23.19583 -21.84580 -20.05336 -18.67357 -18.16624 -17.84194 -17.48868 -17.23628 -16.44561 -16.17922 -15.52711 -14.86091 -14.84317 -14.35728 -14.10085 -14.03477 -13.88227 -13.58237 -13.29565 -12.88573 -12.67795 -12.63962 -12.42694 -12.21013 -12.11009 -11.89724 -11.84553 -11.29189 -10.95410 -10.89380 -10.83591 -10.35258 -10.31740 -10.23947 -10.20371 -9.97312 -9.67403 -9.37409 -9.22236 -9.09938 -8.77589 -8.27475 -8.17917 -7.17454 -5.60547 -2.94612 1.22994 1.99533 2.86904 3.18453 3.31232 3.42281 3.46435 3.52577 4.62632 4.69598 4.71437 4.81647 4.87913 4.94313 5.03184 5.06095 5.20005 5.34304 5.38768 5.43706 5.52568 5.59137 5.61979 5.72623 5.75021 5.80462 5.83137 5.87569 5.90264 5.90867 6.05004 6.11857 6.36808 6.39759 6.41748 6.51214 6.59541 6.71323 6.74008 6.83350 6.85550 6.99023 7.08839 7.69148 8.19673 8.40092 8.48220 8.59404 9.36456 10.06183 10.22925 11.57983 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014429 B = 0.005762 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.072140 B = 4858.427124 C = 5624.224939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.002 4.002 3 Si 0.868 3.132 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.203 4.203 8 H 0.107 0.893 9 N -0.730 5.730 10 C 0.193 3.807 11 C 0.074 3.926 12 O -0.528 6.528 13 C -0.114 4.114 14 C -0.128 4.128 15 C 0.117 3.883 16 N -0.594 5.594 17 C 0.532 3.468 18 O -0.536 6.536 19 C -0.055 4.055 20 C -0.138 4.138 21 C -0.113 4.113 22 C -0.146 4.146 23 C -0.076 4.076 24 C -0.110 4.110 25 C -0.118 4.118 26 C 0.111 3.889 27 H 0.254 0.746 28 H 0.356 0.644 29 H 0.033 0.967 30 H 0.025 0.975 31 H 0.353 0.647 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.106 0.894 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.084 0.916 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.094 -6.050 -2.338 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.196 4.196 3 Si 0.699 3.301 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.333 4.333 8 H 0.125 0.875 9 N -0.372 5.372 10 C 0.100 3.900 11 C -0.008 4.008 12 O -0.330 6.330 13 C -0.154 4.154 14 C -0.166 4.166 15 C -0.005 4.005 16 N -0.327 5.327 17 C 0.320 3.680 18 O -0.413 6.413 19 C -0.076 4.076 20 C -0.156 4.156 21 C -0.131 4.131 22 C -0.164 4.164 23 C -0.094 4.094 24 C -0.128 4.128 25 C -0.137 4.137 26 C -0.013 4.013 27 H 0.065 0.935 28 H 0.189 0.811 29 H 0.051 0.949 30 H 0.043 0.957 31 H 0.198 0.802 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.124 0.876 39 H 0.141 0.859 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.102 0.898 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.996 -5.541 -1.122 19.819 hybrid contribution 0.453 1.022 -0.726 1.333 sum 19.449 -4.519 -1.847 20.052 Atomic orbital electron populations 1.69696 1.04867 1.25044 1.58997 1.24612 0.95066 0.96451 1.03444 0.86766 0.79502 0.86487 0.77329 1.21634 1.22043 1.20589 1.19153 0.80202 0.94850 1.39063 0.87521 1.42733 1.04832 1.00811 1.88804 1.19945 0.88943 0.88257 0.92815 1.22656 0.83217 0.96505 0.98373 1.86986 1.19991 1.83016 1.42967 1.21807 1.02761 0.96313 0.94500 1.21807 0.94534 1.02816 0.97474 1.21582 0.95853 0.95025 0.88030 1.47741 1.55161 1.22580 1.07172 1.20200 0.77336 0.80131 0.90373 1.90649 1.58199 1.64081 1.28370 1.19289 0.98362 0.94099 0.95832 1.22931 0.96750 0.95945 0.99964 1.21033 0.97141 1.00028 0.94857 1.20964 1.03702 0.97102 0.94586 1.21038 0.97346 0.92355 0.98649 1.20964 0.97689 0.96987 0.97197 1.22730 0.96330 0.96876 0.97745 1.21921 0.95337 0.99451 0.84609 0.93540 0.81061 0.94892 0.95673 0.80216 0.93792 0.90221 0.92114 0.89579 0.89730 0.92462 0.87568 0.85935 0.86487 0.87304 0.87152 0.86626 0.86307 0.89770 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.65 13.97 55.49 0.78 -28.88 16 2 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 3 Si 0.87 22.54 27.81 -169.99 -4.73 17.82 16 4 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.91 7.11 56.52 0.40 -7.51 16 6 H -0.28 -7.01 6.43 56.52 0.36 -6.65 16 7 C -0.20 -5.48 8.25 -15.06 -0.12 -5.60 16 8 H 0.11 3.15 5.80 -52.49 -0.30 2.85 16 9 N -0.73 -16.21 4.05 -47.12 -0.19 -16.40 16 10 C 0.19 3.35 0.68 -131.70 -0.09 3.26 16 11 C 0.07 1.18 6.11 37.16 0.23 1.40 16 12 O -0.53 -9.91 10.40 -35.23 -0.37 -10.28 16 13 C -0.11 -1.96 4.34 -26.69 -0.12 -2.08 16 14 C -0.13 -2.20 5.93 -26.61 -0.16 -2.35 16 15 C 0.12 1.82 6.44 -3.71 -0.02 1.79 16 16 N -0.59 -9.36 2.88 -172.77 -0.50 -9.86 16 17 C 0.53 8.97 5.30 -10.99 -0.06 8.92 16 18 O -0.54 -10.54 13.40 5.56 0.07 -10.46 16 19 C -0.05 -0.77 2.12 -94.48 -0.20 -0.97 16 20 C -0.14 -1.54 6.74 -36.44 -0.25 -1.79 16 21 C -0.11 -1.21 9.58 -38.75 -0.37 -1.58 16 22 C -0.15 -1.73 8.53 -38.65 -0.33 -2.06 16 23 C -0.08 -0.97 7.51 -38.65 -0.29 -1.26 16 24 C -0.11 -1.42 9.10 -38.74 -0.35 -1.77 16 25 C -0.12 -1.61 8.74 -36.43 -0.32 -1.92 16 26 C 0.11 1.56 4.13 -3.71 -0.02 1.55 16 27 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 28 H 0.36 8.15 5.51 -40.82 -0.22 7.92 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.35 4.97 9.12 45.56 0.42 5.38 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.61 6.63 -51.93 -0.34 1.27 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.84 7.36 -51.93 -0.38 1.46 16 36 H 0.08 1.42 7.00 -51.93 -0.36 1.05 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.11 1.51 7.67 -51.93 -0.40 1.12 16 39 H 0.12 1.09 7.88 -52.49 -0.41 0.68 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.11 1.16 8.06 -52.48 -0.42 0.74 16 42 H 0.11 1.34 8.06 -52.48 -0.42 0.91 16 43 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.08 1.12 5.03 -51.93 -0.26 0.85 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 351.60 15.07 5.30 5.30 Total: -1.00 -34.78 351.60 -8.30 -43.07 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -6.10 Total: 14.31 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -2.56 Total: -4.61 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.09 Total: -55.14 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.29 Total: -20.74 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.73 Total: 17.82 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.78 -8.30 -43.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755083446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.939 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds