Wall clock time and date at job start Tue Mar 31 2020 11:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00345 * 2 1 4 4 H 1.48501 * 109.46978 * 274.93397 * 3 2 1 5 5 H 1.48491 * 109.47090 * 34.93132 * 3 2 1 6 6 H 1.48493 * 109.47279 * 154.93765 * 3 2 1 7 7 C 1.38816 * 119.99388 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00442 * 354.93823 * 7 2 1 9 9 N 1.36936 * 119.99729 * 174.93577 * 7 2 1 10 10 C 1.46500 * 120.00171 * 185.08496 * 9 7 2 11 11 C 1.53005 * 109.52371 * 65.29230 * 10 9 7 12 12 O 1.42902 * 109.46804 * 305.08220 * 11 10 9 13 13 C 1.53041 * 109.47049 * 305.22680 * 10 9 7 14 14 C 1.53034 * 109.54024 * 301.36773 * 13 10 9 15 15 C 1.53199 * 109.33816 * 298.68202 * 14 13 10 16 16 N 1.46919 * 108.77333 * 54.61770 * 15 14 13 17 17 C 1.34782 * 120.62970 * 126.37377 * 16 15 14 18 18 O 1.21280 * 119.99564 * 354.25804 * 17 16 15 19 19 C 1.50695 * 119.99998 * 174.25921 * 17 16 15 20 20 C 1.50284 * 109.47020 * 304.38425 * 19 17 16 21 21 C 1.32274 * 121.59159 * 303.36539 * 20 19 17 22 22 C 1.45201 * 123.03621 * 0.93969 * 21 20 19 23 23 C 1.32933 * 125.20525 * 319.60780 * 22 21 20 24 24 C 1.45209 * 125.19622 * 359.97438 * 23 22 21 25 25 C 1.32299 * 123.01914 * 40.43249 * 24 23 22 26 26 C 1.46928 * 118.74094 * 306.39287 * 16 15 14 27 27 H 0.97004 * 119.99528 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00298 * 5.08422 * 9 7 2 29 29 H 1.09001 * 109.46791 * 65.08090 * 11 10 9 30 30 H 1.08997 * 109.46933 * 185.08724 * 11 10 9 31 31 H 0.96700 * 113.99447 * 179.97438 * 12 11 10 32 32 H 1.09000 * 109.43347 * 181.35847 * 13 10 9 33 33 H 1.09001 * 109.48452 * 61.40111 * 13 10 9 34 34 H 1.08999 * 109.50083 * 178.71358 * 14 13 10 35 35 H 1.09003 * 109.49991 * 58.64795 * 14 13 10 36 36 H 1.09001 * 109.58702 * 174.40660 * 15 14 13 37 37 H 1.09004 * 109.58592 * 294.83399 * 15 14 13 38 38 H 1.09001 * 109.46978 * 64.36844 * 19 17 16 39 39 H 1.08000 * 119.20235 * 123.31926 * 20 19 17 40 40 H 1.08001 * 118.47272 * 180.98163 * 21 20 19 41 41 H 1.08005 * 117.39282 * 139.58807 * 22 21 20 42 42 H 1.08004 * 117.40633 * 179.97438 * 23 22 21 43 43 H 1.08000 * 118.48935 * 220.45486 * 24 23 22 44 44 H 1.08002 * 119.19974 * 179.00404 * 25 24 23 45 45 H 1.09005 * 109.58601 * 173.39966 * 26 16 15 46 46 H 1.09003 * 109.58679 * 293.67822 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3935 2.1065 -1.3949 5 1 1.5039 2.6202 0.8016 6 1 3.5961 1.4122 0.5930 7 6 2.0102 -1.2023 0.0005 8 1 1.4733 -2.1357 0.0835 9 7 3.3755 -1.2047 -0.1041 10 6 4.0994 -2.4735 -0.2158 11 6 3.7301 -3.1587 -1.5331 12 8 2.3106 -3.3025 -1.6135 13 6 3.7206 -3.3818 0.9562 14 6 4.0601 -2.6839 2.2752 15 6 5.5678 -2.4191 2.3355 16 7 5.9645 -1.6688 1.1363 17 6 6.6427 -0.5091 1.2449 18 8 6.8405 -0.0224 2.3380 19 6 7.1552 0.1827 0.0081 20 6 8.0211 -0.7648 -0.7735 21 6 9.0779 -1.3461 -0.2303 22 6 9.4736 -1.1373 1.1510 23 6 9.4412 0.0281 1.7897 24 6 9.0053 1.2871 1.2123 25 6 7.9615 1.3872 0.4056 26 6 5.6075 -2.2064 -0.1837 27 1 -0.4849 0.8401 -0.0004 28 1 3.8635 -0.3664 -0.1044 29 1 4.0819 -2.5534 -2.3685 30 1 4.1978 -4.1423 -1.5745 31 1 2.0040 -3.7299 -2.4249 32 1 4.2776 -4.3160 0.8858 33 1 2.6518 -3.5930 0.9218 34 1 3.7691 -3.3217 3.1097 35 1 3.5219 -1.7379 2.3354 36 1 5.8009 -1.8349 3.2258 37 1 6.1044 -3.3674 2.3673 38 1 6.3126 0.4969 -0.6080 39 1 7.7742 -0.9768 -1.8033 40 1 9.6743 -2.0060 -0.8430 41 1 9.8216 -1.9975 1.7037 42 1 9.7650 0.0395 2.8200 43 1 9.5587 2.1830 1.4522 44 1 7.6818 2.3580 0.0237 45 1 5.8668 -1.4818 -0.9557 46 1 6.1492 -3.1360 -0.3584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755083446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:07 Heat of formation + Delta-G solvation = -22.393684 kcal Electronic energy + Delta-G solvation = -29087.098075 eV Core-core repulsion = 25363.781381 eV Total energy + Delta-G solvation = -3723.316694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.85365 -39.89392 -38.13132 -36.94549 -35.53576 -34.15658 -33.48575 -33.18543 -32.42734 -31.06458 -27.83461 -26.60477 -26.09804 -25.21487 -24.50441 -23.11977 -21.26980 -20.02667 -19.77107 -19.26605 -18.56599 -18.17405 -17.86549 -17.27123 -16.83752 -16.43236 -16.13015 -15.84048 -15.45287 -15.24612 -15.09624 -14.85317 -14.69048 -14.43739 -14.16462 -13.84744 -13.75856 -13.41311 -13.28028 -13.05644 -12.98925 -12.90265 -12.69424 -12.53196 -12.11389 -11.84774 -11.82867 -11.75237 -11.52482 -11.24194 -11.18622 -10.82331 -10.80687 -10.48560 -10.16275 -9.50244 -9.15785 -9.12948 -7.84536 -5.12943 0.34148 1.09619 1.30903 1.36775 1.40644 1.67214 2.13260 2.28703 2.55253 3.37820 3.47375 3.64074 3.68652 3.81627 3.93777 4.01756 4.07909 4.14762 4.21160 4.23444 4.25772 4.45486 4.48790 4.53725 4.55166 4.65377 4.70083 4.76722 4.82068 4.86466 4.97239 5.00450 5.05265 5.07377 5.24644 5.51847 5.53802 5.57141 5.62732 5.69664 5.83409 5.85389 5.95349 6.09322 6.42169 6.48134 7.17816 7.25348 7.34131 8.00198 8.15214 9.38168 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014429 B = 0.005762 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.072140 B = 4858.427124 C = 5624.224939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.992 5.992 2 C -0.079 4.079 3 Si 0.929 3.071 4 H -0.281 1.281 5 H -0.312 1.312 6 H -0.269 1.269 7 C -0.151 4.151 8 H 0.078 0.922 9 N -0.733 5.733 10 C 0.178 3.822 11 C 0.073 3.927 12 O -0.569 6.569 13 C -0.109 4.109 14 C -0.124 4.124 15 C 0.123 3.877 16 N -0.597 5.597 17 C 0.523 3.477 18 O -0.573 6.573 19 C -0.057 4.057 20 C -0.139 4.139 21 C -0.111 4.111 22 C -0.143 4.143 23 C -0.101 4.101 24 C -0.113 4.113 25 C -0.142 4.142 26 C 0.115 3.885 27 H 0.246 0.754 28 H 0.354 0.646 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.374 0.626 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.119 0.881 42 H 0.107 0.893 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.098 0.902 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.568 -8.041 -4.031 24.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.647 5.647 2 C -0.268 4.268 3 Si 0.761 3.239 4 H -0.208 1.208 5 H -0.240 1.240 6 H -0.195 1.195 7 C -0.283 4.283 8 H 0.096 0.904 9 N -0.375 5.375 10 C 0.088 3.912 11 C -0.008 4.008 12 O -0.374 6.374 13 C -0.148 4.148 14 C -0.162 4.162 15 C 0.001 3.999 16 N -0.328 5.328 17 C 0.312 3.688 18 O -0.453 6.453 19 C -0.078 4.078 20 C -0.157 4.157 21 C -0.129 4.129 22 C -0.161 4.161 23 C -0.119 4.119 24 C -0.131 4.131 25 C -0.160 4.160 26 C -0.008 4.008 27 H 0.055 0.945 28 H 0.186 0.814 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.221 0.779 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.170 0.830 40 H 0.166 0.834 41 H 0.137 0.863 42 H 0.125 0.875 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.116 0.884 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 22.543 -7.588 -2.853 23.956 hybrid contribution -0.568 1.456 -0.120 1.567 sum 21.975 -6.132 -2.973 23.007 Atomic orbital electron populations 1.69864 1.06617 1.25049 1.63137 1.25220 0.95727 0.99683 1.06193 0.85735 0.78291 0.82573 0.77269 1.20799 1.24033 1.19531 1.19028 0.82262 0.93137 1.33866 0.90403 1.42789 1.03168 1.02999 1.88552 1.20438 0.90922 0.86071 0.93810 1.22666 0.82124 0.98784 0.97178 1.86898 1.22102 1.83708 1.44691 1.21733 1.00855 0.97997 0.94207 1.21717 0.95556 1.00459 0.98463 1.21533 0.94503 0.96267 0.87641 1.47870 1.54660 1.22429 1.07830 1.20805 0.77029 0.80072 0.90861 1.90629 1.59657 1.64988 1.30025 1.19342 0.98884 0.94812 0.94750 1.23056 0.96527 0.95225 1.00881 1.21308 0.97108 1.00171 0.94323 1.21257 1.02414 0.96923 0.95521 1.21152 0.98805 0.93019 0.98910 1.21200 0.97550 0.97761 0.96549 1.22919 0.96786 0.97368 0.98914 1.22077 0.92800 1.01860 0.84078 0.94484 0.81357 0.93747 0.91326 0.77941 0.89733 0.94146 0.90663 0.94817 0.91616 0.88824 0.87922 0.82966 0.83423 0.86270 0.87483 0.85303 0.85493 0.88380 0.86749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -65.56 13.97 21.65 0.30 -65.26 16 2 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 3 Si 0.93 48.18 27.81 68.60 1.91 50.08 16 4 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 5 H -0.31 -16.99 7.11 99.48 0.71 -16.28 16 6 H -0.27 -13.23 6.43 99.48 0.64 -12.59 16 7 C -0.15 -8.30 8.25 84.03 0.69 -7.61 16 8 H 0.08 4.75 5.80 -2.91 -0.02 4.74 16 9 N -0.73 -31.86 4.05 -302.99 -1.23 -33.09 16 10 C 0.18 5.64 0.68 3.68 0.00 5.64 16 11 C 0.07 2.02 6.11 71.98 0.44 2.46 16 12 O -0.57 -20.48 10.40 -148.98 -1.55 -22.03 16 13 C -0.11 -3.48 4.34 30.62 0.13 -3.35 16 14 C -0.12 -4.11 5.93 30.67 0.18 -3.93 16 15 C 0.12 3.50 6.44 86.37 0.56 4.06 16 16 N -0.60 -16.98 2.88 -818.90 -2.36 -19.34 16 17 C 0.52 16.63 5.30 87.65 0.46 17.09 16 18 O -0.57 -22.25 13.40 -3.03 -0.04 -22.29 16 19 C -0.06 -1.46 2.12 -13.29 -0.03 -1.49 16 20 C -0.14 -2.49 6.74 24.50 0.17 -2.33 16 21 C -0.11 -1.88 9.58 23.00 0.22 -1.66 16 22 C -0.14 -2.97 8.53 22.89 0.20 -2.77 16 23 C -0.10 -2.43 7.51 22.89 0.17 -2.26 16 24 C -0.11 -2.77 9.10 22.99 0.21 -2.56 16 25 C -0.14 -3.63 8.74 24.49 0.21 -3.42 16 26 C 0.11 2.70 4.13 86.36 0.36 3.05 16 27 H 0.25 15.83 8.31 -92.71 -0.77 15.06 16 28 H 0.35 15.73 5.51 -92.71 -0.51 15.22 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.37 9.85 9.12 -74.06 -0.68 9.17 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 33 H 0.04 1.62 6.63 -2.39 -0.02 1.60 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 35 H 0.03 1.46 7.36 -2.39 -0.02 1.44 16 36 H 0.07 2.15 7.00 -2.39 -0.02 2.13 16 37 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 38 H 0.10 2.67 7.67 -2.39 -0.02 2.66 16 39 H 0.15 1.83 7.88 -2.91 -0.02 1.80 16 40 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 41 H 0.12 2.16 8.06 -2.91 -0.02 2.14 16 42 H 0.11 2.55 8.06 -2.91 -0.02 2.52 16 43 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 44 H 0.13 2.90 8.06 -2.91 -0.02 2.87 16 45 H 0.10 2.10 5.03 -2.38 -0.01 2.09 16 46 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -80.55 351.60 1.22 -79.33 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: -0.26 Total: 35.98 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 4.44 Total: -3.38 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -3.28 Total: -117.69 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -1.59 Total: -44.32 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.91 Total: 50.08 kcal Total: -80.55 1.22 -79.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755083446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.935 kcal (2) G-P(sol) polarization free energy of solvation -80.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds