Wall clock time and date at job start Tue Mar 31 2020 12:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38256 * 119.99623 * 2 1 4 4 C 1.38217 * 119.99909 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.99486 * 359.85228 * 4 3 2 6 6 C 1.38208 * 120.00040 * 0.40222 * 5 4 3 7 7 C 1.50708 * 119.99999 * 179.80926 * 6 5 4 8 8 H 1.08995 * 115.56134 * 154.03920 * 7 6 5 9 9 C 1.52996 * 117.49442 * 8.34433 * 7 6 5 10 10 C 1.52996 * 117.49502 * 299.72489 * 7 6 5 11 11 H 1.09003 * 117.52460 * 0.02562 * 10 7 6 12 12 C 1.50698 * 117.49926 * 214.97552 * 10 7 6 13 13 O 1.21289 * 120.00028 * 359.97438 * 12 10 7 14 14 N 1.34781 * 120.00180 * 179.97438 * 12 10 7 15 15 C 1.46504 * 119.99981 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.46975 * 180.02562 * 15 14 12 17 17 H 1.09003 * 109.46880 * 294.99416 * 16 15 14 18 18 C 1.52996 * 109.47034 * 175.00058 * 16 15 14 19 19 O 1.42907 * 109.47089 * 304.99411 * 18 16 15 20 20 N 1.46496 * 109.47306 * 54.99511 * 16 15 14 21 21 C 1.36939 * 120.00077 * 204.99970 * 20 16 15 22 22 H 1.07997 * 119.99728 * 359.72656 * 21 20 16 23 23 C 1.38815 * 119.99845 * 180.02562 * 21 20 16 24 24 N 1.31619 * 119.99884 * 359.72042 * 23 21 20 25 25 Si 1.86798 * 119.99660 * 179.72678 * 23 21 20 26 26 H 1.48493 * 109.47326 * 89.99909 * 25 23 21 27 27 H 1.48506 * 109.46545 * 209.99659 * 25 23 21 28 28 H 1.48498 * 109.47210 * 329.99370 * 25 23 21 29 29 C 1.38210 * 119.99798 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46837 * 269.97436 * 1 2 3 31 31 H 1.08992 * 109.47014 * 29.97593 * 1 2 3 32 32 H 1.08992 * 109.46882 * 149.97505 * 1 2 3 33 33 H 1.08002 * 120.00529 * 0.02562 * 3 2 1 34 34 H 1.07996 * 120.00218 * 180.02562 * 4 3 2 35 35 H 1.07997 * 119.99835 * 180.20935 * 5 4 3 36 36 H 1.09008 * 117.49596 * 145.02159 * 9 7 6 37 37 H 1.08996 * 117.52324 * 359.97438 * 9 7 6 38 38 H 0.97001 * 120.00139 * 0.02562 * 14 12 10 39 39 H 1.08996 * 109.46873 * 59.99856 * 15 14 12 40 40 H 1.08997 * 109.46925 * 299.99955 * 15 14 12 41 41 H 1.09002 * 109.47651 * 64.99557 * 18 16 15 42 42 H 1.09003 * 109.47466 * 184.99866 * 18 16 15 43 43 H 0.96696 * 113.99881 * 179.97438 * 19 18 16 44 44 H 0.97004 * 120.00009 * 25.00587 * 20 16 15 45 45 H 0.97000 * 119.99517 * 180.02562 * 24 23 21 46 46 H 1.08000 * 120.00406 * 359.97049 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0000 0.0042 6 6 3.5807 -1.1969 -0.0012 7 6 4.3342 -2.5020 -0.0016 8 1 3.8022 -3.3524 0.4250 9 6 5.8495 -2.4428 0.2010 10 6 5.2744 -2.7745 -1.1774 11 1 5.3485 -2.0099 -1.9507 12 6 5.3941 -4.1981 -1.6572 13 8 4.7584 -5.0766 -1.1139 14 7 6.2076 -4.4950 -2.6900 15 6 6.3235 -5.8788 -3.1567 16 6 7.3038 -5.9409 -4.3298 17 1 6.8957 -5.3852 -5.1740 18 6 7.5205 -7.3998 -4.7366 19 8 7.9449 -8.1535 -3.5990 20 7 8.5831 -5.3505 -3.9289 21 6 9.4212 -4.8248 -4.8758 22 1 9.1410 -4.8495 -5.9184 23 6 10.6337 -4.2657 -4.4959 24 7 10.9753 -4.2360 -3.2252 25 14 11.7803 -3.5556 -5.7883 26 1 11.4656 -2.1190 -5.9936 27 1 13.1867 -3.6939 -5.3318 28 1 11.6004 -4.2894 -7.0667 29 6 2.1981 -1.1970 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8901 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6583 2.1327 0.0004 34 1 4.1204 2.1327 0.0010 35 1 5.3517 0.0000 0.0080 36 1 6.3145 -3.2544 0.7609 37 1 6.3019 -1.4602 0.3341 38 1 6.7163 -3.7925 -3.1242 39 1 5.3460 -6.2362 -3.4803 40 1 6.6894 -6.5068 -2.3444 41 1 6.5870 -7.8131 -5.1186 42 1 8.2848 -7.4511 -5.5121 43 1 8.1012 -9.0897 -3.7836 44 1 8.8366 -5.3319 -2.9928 45 1 11.8225 -3.8450 -2.9598 46 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755641915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:32 Heat of formation + Delta-G solvation = -33.719957 kcal Electronic energy + Delta-G solvation = -25799.902676 eV Core-core repulsion = 22076.094837 eV Total energy + Delta-G solvation = -3723.807838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.19556 -39.15905 -37.30162 -36.32107 -34.83565 -33.43772 -32.66884 -31.39237 -30.90186 -28.40845 -27.08645 -25.89454 -23.93867 -23.63729 -23.05257 -22.16037 -20.13024 -19.96736 -19.37645 -17.66191 -17.28626 -16.65966 -16.57588 -15.79552 -15.41876 -15.08025 -14.88526 -14.61013 -14.13745 -14.05216 -13.96816 -13.52648 -13.36840 -13.26867 -13.12412 -12.82759 -12.54361 -12.43573 -12.30512 -11.97718 -11.88872 -11.44761 -11.35874 -11.04208 -10.90744 -10.85490 -10.70828 -10.54053 -10.39835 -10.11300 -9.80168 -9.55219 -9.35902 -8.99246 -8.87355 -8.61322 -8.53857 -7.04708 -5.82537 -3.12851 1.16575 1.25822 2.81689 3.37649 3.41108 3.43661 3.45444 3.66759 4.07524 4.48990 4.51896 4.65138 4.76526 4.81897 4.92363 4.94406 4.98847 5.07372 5.17370 5.29182 5.32292 5.37244 5.42292 5.51929 5.54297 5.56527 5.62098 5.73592 5.89435 5.90566 5.95228 6.02039 6.03839 6.05531 6.06699 6.35344 6.37903 6.44245 6.50873 6.54910 6.74740 6.87996 6.94918 7.61316 7.99982 8.20272 8.34441 8.63375 9.46739 10.02063 10.38739 11.38990 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013699 B = 0.002775 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.408533 B =10086.481054 C =11424.442163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.128 4.128 4 C -0.114 4.114 5 C -0.125 4.125 6 C -0.044 4.044 7 C -0.089 4.089 8 H 0.125 0.875 9 C -0.141 4.141 10 C -0.172 4.172 11 H 0.124 0.876 12 C 0.540 3.460 13 O -0.556 6.556 14 N -0.707 5.707 15 C 0.119 3.881 16 C 0.165 3.835 17 H 0.065 0.935 18 C 0.059 3.941 19 O -0.560 6.560 20 N -0.713 5.713 21 C -0.248 4.248 22 H 0.070 0.930 23 C -0.008 4.008 24 N -0.925 5.925 25 Si 0.906 3.094 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.283 1.283 29 C -0.111 4.111 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.410 0.590 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.026 0.974 42 H 0.048 0.952 43 H 0.364 0.636 44 H 0.389 0.611 45 H 0.256 0.744 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.248 6.914 5.049 19.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.132 4.132 5 C -0.143 4.143 6 C -0.044 4.044 7 C -0.108 4.108 8 H 0.143 0.857 9 C -0.178 4.178 10 C -0.193 4.193 11 H 0.141 0.859 12 C 0.326 3.674 13 O -0.435 6.435 14 N -0.357 5.357 15 C -0.005 4.005 16 C 0.054 3.946 17 H 0.083 0.917 18 C -0.022 4.022 19 O -0.363 6.363 20 N -0.354 5.354 21 C -0.379 4.379 22 H 0.088 0.912 23 C -0.205 4.205 24 N -0.572 5.572 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.209 1.209 29 C -0.129 4.129 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.247 0.753 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.045 0.955 42 H 0.067 0.933 43 H 0.208 0.792 44 H 0.223 0.777 45 H 0.066 0.934 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.639 6.940 5.552 19.752 hybrid contribution 1.287 0.124 -1.129 1.716 sum -16.353 7.064 4.423 18.354 Atomic orbital electron populations 1.20788 0.91260 1.02761 1.02257 1.19895 0.96019 0.93091 0.99700 1.21011 0.94313 0.97381 1.01872 1.21109 0.94259 0.97918 0.99876 1.21114 1.00273 0.91893 1.00990 1.19154 0.93269 0.93067 0.98868 1.21073 0.92055 0.96568 1.01077 0.85661 1.23112 0.94838 1.03789 0.96088 1.22321 1.06946 0.96345 0.93654 0.85855 1.19512 0.79177 0.88929 0.79812 1.90652 1.46459 1.49027 1.57360 1.45908 1.44839 1.11203 1.33791 1.21544 0.98477 0.82251 0.98275 1.20588 0.88065 0.91007 0.94911 0.91694 1.23037 0.96434 0.94320 0.88422 1.86572 1.90583 1.23566 1.35612 1.42367 1.16102 1.69142 1.07827 1.19213 0.98241 1.31124 0.89326 0.91228 1.24746 0.98017 1.01667 0.96029 1.69680 1.23437 1.49999 1.14121 0.86225 0.80531 0.78929 0.80631 1.21680 1.21798 1.20859 1.20880 0.93373 0.97722 1.00928 0.91235 0.91637 0.91483 0.86318 0.86034 0.85674 0.87581 0.87448 0.75332 0.92207 0.90637 0.95538 0.93321 0.79171 0.77655 0.93434 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16 2 C -0.09 -0.86 5.88 -104.62 -0.62 -1.47 16 3 C -0.13 -1.21 9.70 -39.58 -0.38 -1.59 16 4 C -0.11 -1.11 10.05 -39.58 -0.40 -1.51 16 5 C -0.12 -1.35 9.30 -39.58 -0.37 -1.72 16 6 C -0.04 -0.51 5.61 -104.62 -0.59 -1.10 16 7 C -0.09 -1.13 5.56 -91.77 -0.51 -1.64 16 8 H 0.13 1.71 7.67 -51.93 -0.40 1.31 16 9 C -0.14 -1.76 9.56 -26.73 -0.26 -2.02 16 10 C -0.17 -2.38 5.82 -91.78 -0.53 -2.92 16 11 H 0.12 1.56 8.14 -51.93 -0.42 1.14 16 12 C 0.54 9.31 7.61 -10.98 -0.08 9.23 16 13 O -0.56 -11.14 16.26 5.55 0.09 -11.05 16 14 N -0.71 -12.32 5.39 -60.29 -0.32 -12.64 16 15 C 0.12 2.15 5.12 -4.04 -0.02 2.13 16 16 C 0.17 3.15 2.84 -67.94 -0.19 2.96 16 17 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 18 C 0.06 1.03 6.86 37.16 0.25 1.29 16 19 O -0.56 -10.06 12.64 -35.23 -0.45 -10.50 16 20 N -0.71 -16.92 4.51 -53.43 -0.24 -17.16 16 21 C -0.25 -6.49 9.93 -15.06 -0.15 -6.64 16 22 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 24 N -0.93 -27.08 13.06 55.49 0.72 -26.35 16 25 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 29 C -0.11 -1.23 9.39 -39.58 -0.37 -1.60 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.13 1.22 6.02 -52.49 -0.32 0.90 16 36 H 0.11 1.40 8.14 -51.92 -0.42 0.98 16 37 H 0.11 1.14 6.17 -51.93 -0.32 0.82 16 38 H 0.41 7.17 8.14 -40.82 -0.33 6.83 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.54 7.39 -51.93 -0.38 1.16 16 41 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.36 4.70 9.12 45.56 0.42 5.12 16 44 H 0.39 10.27 7.80 -40.82 -0.32 9.96 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 387.19 15.07 5.83 5.83 Total: -1.00 -32.26 387.19 -9.60 -41.86 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -6.26 Total: 20.80 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -3.95 Total: -7.37 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.16 Total: -56.15 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.35 Total: -21.55 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.26 -9.60 -41.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755641915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.142 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds