Wall clock time and date at job start Tue Mar 31 2020 12:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38256 * 119.99623 * 2 1 4 4 C 1.38217 * 119.99909 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.99486 * 359.85228 * 4 3 2 6 6 C 1.38208 * 120.00040 * 0.40222 * 5 4 3 7 7 C 1.50708 * 119.99999 * 179.80926 * 6 5 4 8 8 H 1.08995 * 115.56134 * 154.03920 * 7 6 5 9 9 C 1.52996 * 117.49442 * 8.34433 * 7 6 5 10 10 C 1.52996 * 117.49502 * 299.72489 * 7 6 5 11 11 H 1.09003 * 117.52460 * 0.02562 * 10 7 6 12 12 C 1.50698 * 117.49926 * 214.97552 * 10 7 6 13 13 O 1.21289 * 120.00028 * 359.97438 * 12 10 7 14 14 N 1.34781 * 120.00180 * 179.97438 * 12 10 7 15 15 C 1.46504 * 119.99981 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.46975 * 180.02562 * 15 14 12 17 17 H 1.09003 * 109.46880 * 294.99416 * 16 15 14 18 18 C 1.52996 * 109.47034 * 175.00058 * 16 15 14 19 19 O 1.42907 * 109.47089 * 304.99411 * 18 16 15 20 20 N 1.46496 * 109.47306 * 54.99511 * 16 15 14 21 21 C 1.36939 * 120.00077 * 204.99970 * 20 16 15 22 22 H 1.07997 * 119.99728 * 359.72656 * 21 20 16 23 23 C 1.38815 * 119.99845 * 180.02562 * 21 20 16 24 24 N 1.31619 * 119.99884 * 359.72042 * 23 21 20 25 25 Si 1.86798 * 119.99660 * 179.72678 * 23 21 20 26 26 H 1.48493 * 109.47326 * 89.99909 * 25 23 21 27 27 H 1.48506 * 109.46545 * 209.99659 * 25 23 21 28 28 H 1.48498 * 109.47210 * 329.99370 * 25 23 21 29 29 C 1.38210 * 119.99798 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46837 * 269.97436 * 1 2 3 31 31 H 1.08992 * 109.47014 * 29.97593 * 1 2 3 32 32 H 1.08992 * 109.46882 * 149.97505 * 1 2 3 33 33 H 1.08002 * 120.00529 * 0.02562 * 3 2 1 34 34 H 1.07996 * 120.00218 * 180.02562 * 4 3 2 35 35 H 1.07997 * 119.99835 * 180.20935 * 5 4 3 36 36 H 1.09008 * 117.49596 * 145.02159 * 9 7 6 37 37 H 1.08996 * 117.52324 * 359.97438 * 9 7 6 38 38 H 0.97001 * 120.00139 * 0.02562 * 14 12 10 39 39 H 1.08996 * 109.46873 * 59.99856 * 15 14 12 40 40 H 1.08997 * 109.46925 * 299.99955 * 15 14 12 41 41 H 1.09002 * 109.47651 * 64.99557 * 18 16 15 42 42 H 1.09003 * 109.47466 * 184.99866 * 18 16 15 43 43 H 0.96696 * 113.99881 * 179.97438 * 19 18 16 44 44 H 0.97004 * 120.00009 * 25.00587 * 20 16 15 45 45 H 0.97000 * 119.99517 * 180.02562 * 24 23 21 46 46 H 1.08000 * 120.00406 * 359.97049 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0000 0.0042 6 6 3.5807 -1.1969 -0.0012 7 6 4.3342 -2.5020 -0.0016 8 1 3.8022 -3.3524 0.4250 9 6 5.8495 -2.4428 0.2010 10 6 5.2744 -2.7745 -1.1774 11 1 5.3485 -2.0099 -1.9507 12 6 5.3941 -4.1981 -1.6572 13 8 4.7584 -5.0766 -1.1139 14 7 6.2076 -4.4950 -2.6900 15 6 6.3235 -5.8788 -3.1567 16 6 7.3038 -5.9409 -4.3298 17 1 6.8957 -5.3852 -5.1740 18 6 7.5205 -7.3998 -4.7366 19 8 7.9449 -8.1535 -3.5990 20 7 8.5831 -5.3505 -3.9289 21 6 9.4212 -4.8248 -4.8758 22 1 9.1410 -4.8495 -5.9184 23 6 10.6337 -4.2657 -4.4959 24 7 10.9753 -4.2360 -3.2252 25 14 11.7803 -3.5556 -5.7883 26 1 11.4656 -2.1190 -5.9936 27 1 13.1867 -3.6939 -5.3318 28 1 11.6004 -4.2894 -7.0667 29 6 2.1981 -1.1970 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8901 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6583 2.1327 0.0004 34 1 4.1204 2.1327 0.0010 35 1 5.3517 0.0000 0.0080 36 1 6.3145 -3.2544 0.7609 37 1 6.3019 -1.4602 0.3341 38 1 6.7163 -3.7925 -3.1242 39 1 5.3460 -6.2362 -3.4803 40 1 6.6894 -6.5068 -2.3444 41 1 6.5870 -7.8131 -5.1186 42 1 8.2848 -7.4511 -5.5121 43 1 8.1012 -9.0897 -3.7836 44 1 8.8366 -5.3319 -2.9928 45 1 11.8225 -3.8450 -2.9598 46 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755641915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:31 Heat of formation + Delta-G solvation = -55.580139 kcal Electronic energy + Delta-G solvation = -25800.850604 eV Core-core repulsion = 22076.094837 eV Total energy + Delta-G solvation = -3724.755767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.30260 -40.23137 -38.72933 -37.45019 -36.36168 -35.17274 -33.40432 -33.12133 -31.76186 -30.15303 -27.79191 -27.21771 -25.69806 -24.76744 -24.26516 -22.94975 -21.65434 -21.11636 -20.47208 -19.42018 -18.46840 -18.16511 -17.62718 -17.21169 -16.62969 -16.21294 -16.19092 -15.84941 -15.63507 -15.27884 -14.92046 -14.84822 -14.63270 -14.55673 -14.39823 -14.02246 -13.69677 -13.53276 -13.18383 -13.04104 -12.99281 -12.82106 -12.75812 -12.63090 -12.26447 -12.20584 -11.90960 -11.84946 -11.73963 -11.58875 -11.43040 -11.05741 -10.86388 -10.72627 -10.02115 -9.65165 -9.41597 -9.00272 -7.89507 -5.18814 0.36513 0.48912 1.49569 1.50557 1.51248 1.59098 2.19470 2.58075 2.67585 3.08599 3.42096 3.52392 3.60816 3.70528 3.83419 3.89993 3.95448 4.02135 4.07023 4.11520 4.20376 4.25538 4.43526 4.52258 4.54355 4.55367 4.60063 4.72410 4.82998 4.84739 4.88045 4.93147 4.99424 5.01937 5.06116 5.17821 5.21877 5.32620 5.49692 5.55873 5.59424 5.69635 5.72768 6.13461 6.29171 6.58490 7.05932 7.23169 7.37399 8.09224 8.35061 9.33227 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013699 B = 0.002775 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.408533 B =10086.481054 C =11424.442163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.130 4.130 4 C -0.118 4.118 5 C -0.135 4.135 6 C -0.059 4.059 7 C -0.078 4.078 8 H 0.110 0.890 9 C -0.135 4.135 10 C -0.180 4.180 11 H 0.138 0.862 12 C 0.537 3.463 13 O -0.588 6.588 14 N -0.706 5.706 15 C 0.130 3.870 16 C 0.161 3.839 17 H 0.079 0.921 18 C 0.064 3.936 19 O -0.584 6.584 20 N -0.722 5.722 21 C -0.237 4.237 22 H 0.081 0.919 23 C -0.071 4.071 24 N -0.965 5.965 25 Si 0.969 3.031 26 H -0.286 1.286 27 H -0.303 1.303 28 H -0.271 1.271 29 C -0.128 4.128 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.095 0.905 37 H 0.130 0.870 38 H 0.411 0.589 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.065 0.935 42 H 0.037 0.963 43 H 0.385 0.615 44 H 0.373 0.627 45 H 0.248 0.752 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.512 8.237 3.961 20.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.136 4.136 5 C -0.153 4.153 6 C -0.059 4.059 7 C -0.096 4.096 8 H 0.128 0.872 9 C -0.172 4.172 10 C -0.201 4.201 11 H 0.156 0.844 12 C 0.324 3.676 13 O -0.470 6.470 14 N -0.356 5.356 15 C 0.005 3.995 16 C 0.052 3.948 17 H 0.097 0.903 18 C -0.017 4.017 19 O -0.391 6.391 20 N -0.362 5.362 21 C -0.369 4.369 22 H 0.098 0.902 23 C -0.263 4.263 24 N -0.616 5.616 25 Si 0.799 3.201 26 H -0.213 1.213 27 H -0.230 1.230 28 H -0.196 1.196 29 C -0.146 4.146 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.151 0.849 36 H 0.113 0.887 37 H 0.148 0.852 38 H 0.247 0.753 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.056 0.944 43 H 0.233 0.767 44 H 0.204 0.796 45 H 0.057 0.943 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.945 8.232 4.414 21.123 hybrid contribution 1.558 -0.344 -0.778 1.776 sum -17.386 7.888 3.636 19.435 Atomic orbital electron populations 1.20834 0.89528 1.03516 1.03086 1.20218 0.97432 0.92783 0.98910 1.21364 0.94467 0.98197 1.00789 1.21423 0.94702 0.98373 0.99077 1.21271 1.00814 0.91965 1.01211 1.19139 0.93588 0.92747 1.00436 1.20966 0.92077 0.96840 0.99741 0.87195 1.23202 0.94980 1.04468 0.94554 1.22303 1.08742 0.94415 0.94620 0.84434 1.20056 0.78282 0.90067 0.79146 1.90629 1.47710 1.50377 1.58241 1.45924 1.44788 1.10935 1.33961 1.21380 0.98759 0.82356 0.97004 1.20837 0.86203 0.92209 0.95532 0.90309 1.22882 0.97877 0.93125 0.87784 1.86525 1.90806 1.25503 1.36235 1.42462 1.17427 1.69653 1.06613 1.19601 0.98069 1.29103 0.90102 0.90152 1.25481 0.99908 1.03295 0.97638 1.69843 1.23625 1.52059 1.16035 0.85217 0.77870 0.78326 0.78732 1.21313 1.23042 1.19619 1.21033 0.93390 0.98488 1.01679 0.90289 0.90239 0.91407 0.83958 0.83906 0.84918 0.88692 0.85224 0.75279 0.90603 0.93217 0.91672 0.94446 0.76672 0.79570 0.94264 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.01 71.24 0.71 -0.71 16 2 C -0.09 -1.70 5.88 -19.86 -0.12 -1.81 16 3 C -0.13 -2.16 9.70 22.27 0.22 -1.94 16 4 C -0.12 -2.05 10.05 22.27 0.22 -1.82 16 5 C -0.13 -2.73 9.30 22.27 0.21 -2.52 16 6 C -0.06 -1.36 5.61 -19.86 -0.11 -1.47 16 7 C -0.08 -1.99 5.56 -11.54 -0.06 -2.05 16 8 H 0.11 3.14 7.67 -2.39 -0.02 3.12 16 9 C -0.13 -3.36 9.56 30.59 0.29 -3.07 16 10 C -0.18 -5.00 5.82 -11.54 -0.07 -5.07 16 11 H 0.14 3.40 8.14 -2.39 -0.02 3.38 16 12 C 0.54 18.79 7.61 87.66 0.67 19.46 16 13 O -0.59 -24.12 16.26 -3.06 -0.05 -24.17 16 14 N -0.71 -24.70 5.39 -463.05 -2.49 -27.20 16 15 C 0.13 4.65 5.12 86.38 0.44 5.09 16 16 C 0.16 5.98 2.84 44.99 0.13 6.10 16 17 H 0.08 2.72 8.08 -2.39 -0.02 2.70 16 18 C 0.06 2.11 6.86 71.98 0.49 2.60 16 19 O -0.58 -20.40 12.64 -148.98 -1.88 -22.29 16 20 N -0.72 -34.19 4.51 -322.95 -1.46 -35.64 16 21 C -0.24 -12.25 9.93 84.03 0.83 -11.41 16 22 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 23 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 24 N -0.97 -57.51 13.06 21.65 0.28 -57.22 16 25 Si 0.97 44.42 29.55 68.60 2.03 46.45 16 26 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 29 C -0.13 -2.78 9.39 22.27 0.21 -2.57 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 32 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 33 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.13 2.38 6.02 -2.91 -0.02 2.36 16 36 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 37 H 0.13 2.61 6.17 -2.39 -0.01 2.60 16 38 H 0.41 14.35 8.14 -92.71 -0.75 13.60 16 39 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.05 2.06 7.39 -2.39 -0.02 2.04 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.39 9.42 9.12 -74.06 -0.68 8.74 16 44 H 0.37 20.05 7.80 -92.71 -0.72 19.32 16 45 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 46 H 0.12 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -69.57 387.19 -0.18 -69.75 By element: Atomic # 1 Polarization: 56.07 SS G_CDS: -1.14 Total: 54.93 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 4.53 Total: -4.60 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -3.67 Total: -120.06 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -1.93 Total: -46.46 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -69.57 -0.18 -69.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755641915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.166 kcal (2) G-P(sol) polarization free energy of solvation -69.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds