Wall clock time and date at job start Tue Mar 31 2020 12:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38254 * 119.99944 * 2 1 4 4 C 1.38212 * 120.00010 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99715 * 359.85828 * 4 3 2 6 6 C 1.38212 * 120.00007 * 0.39821 * 5 4 3 7 7 C 1.50704 * 119.99941 * 179.80873 * 6 5 4 8 8 H 1.09000 * 115.55884 * 154.03554 * 7 6 5 9 9 C 1.53002 * 117.49787 * 8.34759 * 7 6 5 10 10 C 1.52997 * 59.99990 * 252.50965 * 9 7 6 11 11 H 1.09000 * 117.50033 * 107.51314 * 10 9 7 12 12 C 1.50699 * 117.49851 * 252.50977 * 10 9 7 13 13 O 1.21290 * 120.00038 * 68.61220 * 12 10 9 14 14 N 1.34772 * 120.00153 * 248.60692 * 12 10 9 15 15 C 1.46500 * 120.00336 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.47520 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.47153 * 64.99881 * 16 15 14 18 18 C 1.53000 * 109.47060 * 185.00200 * 16 15 14 19 19 O 1.42899 * 109.47494 * 54.99979 * 18 16 15 20 20 N 1.46500 * 109.47007 * 304.99970 * 16 15 14 21 21 C 1.36931 * 119.99971 * 154.99885 * 20 16 15 22 22 H 1.08005 * 120.00425 * 359.97438 * 21 20 16 23 23 C 1.38812 * 120.00390 * 180.02562 * 21 20 16 24 24 N 1.31615 * 120.00668 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 119.99606 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.46957 * 90.00190 * 25 23 21 27 27 H 1.48504 * 109.47174 * 209.99865 * 25 23 21 28 28 H 1.48499 * 109.46983 * 330.00165 * 25 23 21 29 29 C 1.38207 * 119.99813 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47191 * 269.97845 * 1 2 3 31 31 H 1.09003 * 109.47233 * 29.97663 * 1 2 3 32 32 H 1.08999 * 109.47337 * 149.97850 * 1 2 3 33 33 H 1.08008 * 120.00430 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.00022 * 180.02562 * 4 3 2 35 35 H 1.08006 * 119.99897 * 180.20743 * 5 4 3 36 36 H 1.09003 * 117.49718 * 145.01585 * 9 7 6 37 37 H 1.08998 * 117.51650 * 359.97438 * 9 7 6 38 38 H 0.96995 * 120.00026 * 0.02562 * 14 12 10 39 39 H 1.09004 * 109.46930 * 59.99784 * 15 14 12 40 40 H 1.09002 * 109.46951 * 300.00414 * 15 14 12 41 41 H 1.09001 * 109.46952 * 174.99972 * 18 16 15 42 42 H 1.09008 * 109.47142 * 294.99397 * 18 16 15 43 43 H 0.96693 * 114.00295 * 179.97438 * 19 18 16 44 44 H 0.97004 * 120.00223 * 334.99863 * 20 16 15 45 45 H 0.96997 * 120.00544 * 180.02562 * 24 23 21 46 46 H 1.08003 * 120.00291 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0000 0.0040 6 6 3.5805 -1.1969 -0.0013 7 6 4.3340 -2.5021 -0.0019 8 1 3.8020 -3.3524 0.4247 9 6 5.8494 -2.4430 0.2006 10 6 5.2742 -2.7745 -1.1778 11 1 5.3480 -2.0100 -1.9511 12 6 5.3939 -4.1981 -1.6576 13 8 4.7579 -5.0766 -1.1146 14 7 6.2074 -4.4950 -2.6902 15 6 6.3233 -5.8788 -3.1571 16 6 7.3037 -5.9410 -4.3300 17 1 8.3011 -5.6686 -3.9847 18 6 7.3306 -7.3616 -4.8975 19 8 6.0030 -7.7619 -5.2428 20 7 6.8762 -5.0062 -5.3739 21 6 7.7932 -4.4964 -6.2538 22 1 8.8317 -4.7832 -6.1781 23 6 7.3883 -3.6103 -7.2426 24 7 8.2695 -3.1207 -8.0888 25 14 5.5922 -3.1138 -7.3732 26 1 5.3502 -1.9080 -6.5410 27 1 5.2638 -2.8116 -8.7896 28 1 4.7347 -4.2270 -6.8929 29 6 2.1980 -1.1969 -0.0005 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6583 2.1327 0.0004 34 1 4.1204 2.1327 0.0010 35 1 5.3516 0.0000 0.0078 36 1 6.3144 -3.2545 0.7605 37 1 6.3017 -1.4603 0.3338 38 1 6.7162 -3.7925 -3.1243 39 1 5.3457 -6.2361 -3.4809 40 1 6.6889 -6.5069 -2.3447 41 1 7.9603 -7.3857 -5.7869 42 1 7.7330 -8.0443 -4.1489 43 1 5.9443 -8.6544 -5.6102 44 1 5.9435 -4.7483 -5.4417 45 1 7.9866 -2.5012 -8.7795 46 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755641916.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:35 Heat of formation + Delta-G solvation = -30.254802 kcal Electronic energy + Delta-G solvation = -25988.436663 eV Core-core repulsion = 22264.779086 eV Total energy + Delta-G solvation = -3723.657578 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.28944 -39.25553 -37.45920 -36.43414 -34.98939 -33.54844 -32.69690 -31.55415 -30.97210 -28.98700 -27.11348 -26.03013 -23.95075 -23.54116 -23.01615 -22.19727 -20.24466 -20.07484 -19.51256 -17.96647 -17.40196 -16.89609 -16.68564 -15.87644 -15.44652 -15.23550 -14.99401 -14.58579 -14.34047 -14.09764 -13.96946 -13.68005 -13.46780 -13.30739 -13.04847 -12.85760 -12.60610 -12.47201 -12.42287 -12.32094 -12.02422 -11.61363 -11.44581 -11.09370 -11.02938 -10.89664 -10.78589 -10.68741 -10.53247 -10.12708 -9.69815 -9.65945 -9.47106 -9.02699 -8.90007 -8.71928 -8.64118 -7.37191 -5.85081 -3.21526 1.13125 1.23347 2.67070 3.32128 3.35284 3.42908 3.44255 3.54716 3.95869 4.40921 4.54112 4.60470 4.70861 4.72864 4.79710 4.82782 4.94682 4.99506 5.14898 5.18411 5.20188 5.27698 5.35712 5.37177 5.45098 5.48983 5.57550 5.62287 5.78803 5.84569 5.86586 5.89816 5.92155 5.94234 5.99826 6.20748 6.31791 6.36812 6.42063 6.49571 6.59969 6.79139 6.85173 7.83808 7.88228 8.09743 8.33826 8.48197 9.11792 9.84497 10.04523 11.32541 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.003227 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.268615 B = 8673.801724 C = 9807.190302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.113 4.113 5 C -0.125 4.125 6 C -0.046 4.046 7 C -0.086 4.086 8 H 0.126 0.874 9 C -0.144 4.144 10 C -0.175 4.175 11 H 0.126 0.874 12 C 0.540 3.460 13 O -0.552 6.552 14 N -0.712 5.712 15 C 0.115 3.885 16 C 0.172 3.828 17 H 0.075 0.925 18 C 0.059 3.941 19 O -0.565 6.565 20 N -0.738 5.738 21 C -0.251 4.251 22 H 0.091 0.909 23 C 0.011 3.989 24 N -0.931 5.931 25 Si 0.879 3.121 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.274 1.274 29 C -0.110 4.110 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.410 0.590 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.031 0.969 43 H 0.366 0.634 44 H 0.366 0.634 45 H 0.260 0.740 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.742 3.782 18.246 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.131 4.131 5 C -0.143 4.143 6 C -0.046 4.046 7 C -0.104 4.104 8 H 0.144 0.856 9 C -0.181 4.181 10 C -0.197 4.197 11 H 0.144 0.856 12 C 0.326 3.674 13 O -0.431 6.431 14 N -0.363 5.363 15 C -0.009 4.009 16 C 0.061 3.939 17 H 0.093 0.907 18 C -0.022 4.022 19 O -0.368 6.368 20 N -0.382 5.382 21 C -0.380 4.380 22 H 0.109 0.891 23 C -0.185 4.185 24 N -0.578 5.578 25 Si 0.709 3.291 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.200 1.200 29 C -0.128 4.128 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.246 0.754 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.049 0.951 43 H 0.211 0.789 44 H 0.199 0.801 45 H 0.070 0.930 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.097 3.821 18.691 21.135 hybrid contribution -0.718 0.143 -0.957 1.205 sum -9.815 3.964 17.734 20.653 Atomic orbital electron populations 1.20796 0.91198 1.02882 1.02256 1.19903 0.96088 0.93073 0.99512 1.21027 0.94327 0.97432 1.01658 1.21105 0.94284 0.97910 0.99841 1.21076 1.00127 0.91911 1.01180 1.19125 0.93307 0.92988 0.99183 1.21059 0.91868 0.96717 1.00753 0.85603 1.23110 0.95312 1.03611 0.96054 1.22377 1.07185 0.96423 0.93668 0.85600 1.19533 0.79069 0.88958 0.79890 1.90662 1.45803 1.49010 1.57633 1.45954 1.45486 1.11296 1.33531 1.21607 1.01444 0.81870 0.95957 1.20569 0.96753 0.88664 0.87912 0.90742 1.22999 0.83821 0.96915 0.98491 1.86525 1.28696 1.36055 1.85557 1.42742 1.07759 1.52455 1.35204 1.19043 0.91325 1.20540 1.07103 0.89149 1.24632 0.96923 0.99415 0.97565 1.69692 1.32777 1.35223 1.20066 0.86624 0.86623 0.78617 0.77215 1.21044 1.21725 1.19954 1.20887 0.93376 0.97790 1.00791 0.91205 0.91568 0.91428 0.86238 0.85994 0.85775 0.87739 0.87436 0.75369 0.90642 0.91724 0.92770 0.95115 0.78883 0.80069 0.92965 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.00 0.36 -0.53 16 2 C -0.09 -0.88 5.88 -104.63 -0.62 -1.49 16 3 C -0.13 -1.23 9.70 -39.58 -0.38 -1.61 16 4 C -0.11 -1.11 10.05 -39.58 -0.40 -1.51 16 5 C -0.13 -1.32 9.30 -39.58 -0.37 -1.69 16 6 C -0.05 -0.53 5.61 -104.62 -0.59 -1.12 16 7 C -0.09 -1.02 5.56 -91.77 -0.51 -1.53 16 8 H 0.13 1.62 7.67 -51.93 -0.40 1.23 16 9 C -0.14 -1.50 9.56 -26.73 -0.26 -1.76 16 10 C -0.18 -2.28 5.82 -91.77 -0.53 -2.82 16 11 H 0.13 1.59 8.14 -51.93 -0.42 1.17 16 12 C 0.54 8.74 7.61 -10.99 -0.08 8.66 16 13 O -0.55 -10.49 16.26 5.55 0.09 -10.40 16 14 N -0.71 -11.57 5.39 -60.29 -0.32 -11.90 16 15 C 0.12 1.95 5.12 -4.04 -0.02 1.93 16 16 C 0.17 3.11 2.84 -67.93 -0.19 2.92 16 17 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 18 C 0.06 0.98 6.86 37.16 0.25 1.23 16 19 O -0.56 -9.54 12.64 -35.23 -0.45 -9.98 16 20 N -0.74 -16.58 4.31 -53.43 -0.23 -16.81 16 21 C -0.25 -6.66 10.41 -15.06 -0.16 -6.82 16 22 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 23 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 24 N -0.93 -28.34 13.97 55.49 0.78 -27.56 16 25 Si 0.88 21.99 27.74 -169.99 -4.71 17.27 16 26 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 28 H -0.27 -6.74 6.52 56.52 0.37 -6.37 16 29 C -0.11 -1.25 9.39 -39.59 -0.37 -1.62 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 33 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.12 1.11 6.02 -52.48 -0.32 0.80 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.11 0.91 6.17 -51.93 -0.32 0.59 16 38 H 0.41 6.59 8.14 -40.82 -0.33 6.26 16 39 H 0.08 1.43 7.40 -51.93 -0.38 1.05 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 43 H 0.37 4.39 9.12 45.56 0.42 4.80 16 44 H 0.37 8.58 5.66 -40.82 -0.23 8.34 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -33.52 384.07 -9.24 -42.77 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -6.22 Total: 18.38 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -3.96 Total: -7.55 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.22 Total: -56.28 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.35 Total: -20.38 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.52 -9.24 -42.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755641916.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.512 kcal (2) G-P(sol) polarization free energy of solvation -33.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds