Wall clock time and date at job start Tue Mar 31 2020 12:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38254 * 119.99944 * 2 1 4 4 C 1.38212 * 120.00010 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99715 * 359.85828 * 4 3 2 6 6 C 1.38212 * 120.00007 * 0.39821 * 5 4 3 7 7 C 1.50704 * 119.99941 * 179.80873 * 6 5 4 8 8 H 1.09000 * 115.55884 * 154.03554 * 7 6 5 9 9 C 1.53002 * 117.49787 * 8.34759 * 7 6 5 10 10 C 1.52997 * 59.99990 * 252.50965 * 9 7 6 11 11 H 1.09000 * 117.50033 * 107.51314 * 10 9 7 12 12 C 1.50699 * 117.49851 * 252.50977 * 10 9 7 13 13 O 1.21290 * 120.00038 * 68.61220 * 12 10 9 14 14 N 1.34772 * 120.00153 * 248.60692 * 12 10 9 15 15 C 1.46500 * 120.00336 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.47520 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.47153 * 64.99881 * 16 15 14 18 18 C 1.53000 * 109.47060 * 185.00200 * 16 15 14 19 19 O 1.42899 * 109.47494 * 54.99979 * 18 16 15 20 20 N 1.46500 * 109.47007 * 304.99970 * 16 15 14 21 21 C 1.36931 * 119.99971 * 154.99885 * 20 16 15 22 22 H 1.08005 * 120.00425 * 359.97438 * 21 20 16 23 23 C 1.38812 * 120.00390 * 180.02562 * 21 20 16 24 24 N 1.31615 * 120.00668 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 119.99606 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.46957 * 90.00190 * 25 23 21 27 27 H 1.48504 * 109.47174 * 209.99865 * 25 23 21 28 28 H 1.48499 * 109.46983 * 330.00165 * 25 23 21 29 29 C 1.38207 * 119.99813 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47191 * 269.97845 * 1 2 3 31 31 H 1.09003 * 109.47233 * 29.97663 * 1 2 3 32 32 H 1.08999 * 109.47337 * 149.97850 * 1 2 3 33 33 H 1.08008 * 120.00430 * 0.02562 * 3 2 1 34 34 H 1.08002 * 120.00022 * 180.02562 * 4 3 2 35 35 H 1.08006 * 119.99897 * 180.20743 * 5 4 3 36 36 H 1.09003 * 117.49718 * 145.01585 * 9 7 6 37 37 H 1.08998 * 117.51650 * 359.97438 * 9 7 6 38 38 H 0.96995 * 120.00026 * 0.02562 * 14 12 10 39 39 H 1.09004 * 109.46930 * 59.99784 * 15 14 12 40 40 H 1.09002 * 109.46951 * 300.00414 * 15 14 12 41 41 H 1.09001 * 109.46952 * 174.99972 * 18 16 15 42 42 H 1.09008 * 109.47142 * 294.99397 * 18 16 15 43 43 H 0.96693 * 114.00295 * 179.97438 * 19 18 16 44 44 H 0.97004 * 120.00223 * 334.99863 * 20 16 15 45 45 H 0.96997 * 120.00544 * 180.02562 * 24 23 21 46 46 H 1.08003 * 120.00291 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0000 0.0040 6 6 3.5805 -1.1969 -0.0013 7 6 4.3340 -2.5021 -0.0019 8 1 3.8020 -3.3524 0.4247 9 6 5.8494 -2.4430 0.2006 10 6 5.2742 -2.7745 -1.1778 11 1 5.3480 -2.0100 -1.9511 12 6 5.3939 -4.1981 -1.6576 13 8 4.7579 -5.0766 -1.1146 14 7 6.2074 -4.4950 -2.6902 15 6 6.3233 -5.8788 -3.1571 16 6 7.3037 -5.9410 -4.3300 17 1 8.3011 -5.6686 -3.9847 18 6 7.3306 -7.3616 -4.8975 19 8 6.0030 -7.7619 -5.2428 20 7 6.8762 -5.0062 -5.3739 21 6 7.7932 -4.4964 -6.2538 22 1 8.8317 -4.7832 -6.1781 23 6 7.3883 -3.6103 -7.2426 24 7 8.2695 -3.1207 -8.0888 25 14 5.5922 -3.1138 -7.3732 26 1 5.3502 -1.9080 -6.5410 27 1 5.2638 -2.8116 -8.7896 28 1 4.7347 -4.2270 -6.8929 29 6 2.1980 -1.1969 -0.0005 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6583 2.1327 0.0004 34 1 4.1204 2.1327 0.0010 35 1 5.3516 0.0000 0.0078 36 1 6.3144 -3.2545 0.7605 37 1 6.3017 -1.4603 0.3338 38 1 6.7162 -3.7925 -3.1243 39 1 5.3457 -6.2361 -3.4809 40 1 6.6889 -6.5069 -2.3447 41 1 7.9603 -7.3857 -5.7869 42 1 7.7330 -8.0443 -4.1489 43 1 5.9443 -8.6544 -5.6102 44 1 5.9435 -4.7483 -5.4417 45 1 7.9866 -2.5012 -8.7795 46 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755641916.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:34 Heat of formation + Delta-G solvation = -53.590948 kcal Electronic energy + Delta-G solvation = -25989.448595 eV Core-core repulsion = 22264.779086 eV Total energy + Delta-G solvation = -3724.669509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.33041 -40.26468 -38.83335 -37.46868 -36.44123 -35.23588 -33.47107 -33.34132 -31.80256 -30.66573 -27.83080 -27.26345 -25.43046 -24.75778 -24.24357 -22.97438 -21.73243 -21.18797 -20.53459 -19.81801 -18.49768 -18.30799 -17.62473 -17.23980 -16.66480 -16.36045 -16.17118 -15.91132 -15.73371 -15.11599 -15.02530 -14.86039 -14.69195 -14.63027 -14.39721 -14.19325 -14.04497 -13.58025 -13.22918 -13.19219 -13.03123 -12.88603 -12.77947 -12.66293 -12.40388 -12.22925 -11.89574 -11.86446 -11.80953 -11.60716 -11.45230 -11.10940 -10.91117 -10.76813 -10.07227 -9.67523 -9.43501 -9.34374 -8.02429 -5.34570 0.34578 0.46621 1.35679 1.39738 1.45268 1.47141 2.16443 2.46773 2.64204 3.05709 3.28784 3.42660 3.52829 3.68157 3.69066 3.83213 3.91230 3.95102 4.04799 4.11657 4.20357 4.23127 4.37137 4.49081 4.51108 4.52069 4.59005 4.71239 4.78510 4.80674 4.83414 4.92498 4.96154 4.99555 5.06061 5.15484 5.15950 5.29660 5.45586 5.57010 5.66890 5.70184 5.77091 6.11365 6.21303 6.54108 7.01023 7.07515 7.19728 7.82057 8.00973 9.18526 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.003227 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.268615 B = 8673.801724 C = 9807.190302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.133 4.133 4 C -0.119 4.119 5 C -0.134 4.134 6 C -0.060 4.060 7 C -0.085 4.085 8 H 0.110 0.890 9 C -0.120 4.120 10 C -0.188 4.188 11 H 0.131 0.869 12 C 0.538 3.462 13 O -0.584 6.584 14 N -0.712 5.712 15 C 0.127 3.873 16 C 0.166 3.834 17 H 0.083 0.917 18 C 0.064 3.936 19 O -0.584 6.584 20 N -0.741 5.741 21 C -0.221 4.221 22 H 0.069 0.931 23 C -0.052 4.052 24 N -0.978 5.978 25 Si 0.940 3.060 26 H -0.276 1.276 27 H -0.300 1.300 28 H -0.269 1.269 29 C -0.132 4.132 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.107 0.893 37 H 0.133 0.867 38 H 0.412 0.588 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.036 0.964 42 H 0.070 0.930 43 H 0.388 0.612 44 H 0.362 0.638 45 H 0.257 0.743 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.363 4.448 19.851 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.136 4.136 5 C -0.151 4.151 6 C -0.060 4.060 7 C -0.104 4.104 8 H 0.128 0.872 9 C -0.157 4.157 10 C -0.209 4.209 11 H 0.149 0.851 12 C 0.326 3.674 13 O -0.465 6.465 14 N -0.362 5.362 15 C 0.003 3.997 16 C 0.057 3.943 17 H 0.101 0.899 18 C -0.016 4.016 19 O -0.391 6.391 20 N -0.384 5.384 21 C -0.352 4.352 22 H 0.087 0.913 23 C -0.244 4.244 24 N -0.629 5.629 25 Si 0.769 3.231 26 H -0.202 1.202 27 H -0.227 1.227 28 H -0.194 1.194 29 C -0.150 4.150 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.157 0.843 36 H 0.125 0.875 37 H 0.151 0.849 38 H 0.248 0.752 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.236 0.764 44 H 0.195 0.805 45 H 0.066 0.934 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.725 4.441 20.336 22.975 hybrid contribution -0.506 -0.157 -1.369 1.468 sum -10.231 4.284 18.967 21.972 Atomic orbital electron populations 1.20836 0.89722 1.03367 1.03114 1.20214 0.97380 0.92920 0.99009 1.21365 0.94677 0.98095 1.00931 1.21447 0.94596 0.98602 0.98996 1.21299 1.01017 0.91740 1.01074 1.19184 0.93477 0.93130 1.00244 1.20986 0.92790 0.96636 0.99998 0.87178 1.23252 0.94196 1.04893 0.93355 1.22324 1.09428 0.94349 0.94829 0.85120 1.20032 0.78121 0.89999 0.79255 1.90643 1.46971 1.50325 1.58609 1.45974 1.45575 1.11083 1.33588 1.21435 0.99935 0.82601 0.95772 1.20828 0.97395 0.88840 0.87197 0.89894 1.22819 0.83705 0.96453 0.98647 1.86470 1.28694 1.38072 1.85911 1.42728 1.06798 1.53352 1.35481 1.19025 0.91029 1.18635 1.06479 0.91271 1.25248 1.00371 1.00634 0.98120 1.69834 1.34648 1.36969 1.21442 0.85643 0.82389 0.78536 0.76528 1.20196 1.22715 1.19410 1.21051 0.93727 0.98348 1.01879 0.90105 0.90394 0.91631 0.84131 0.83783 0.84265 0.87450 0.84908 0.75199 0.92616 0.90010 0.94605 0.91233 0.76379 0.80495 0.93437 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 10.01 71.24 0.71 -0.90 16 2 C -0.10 -1.84 5.88 -19.87 -0.12 -1.95 16 3 C -0.13 -2.31 9.70 22.27 0.22 -2.09 16 4 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 5 C -0.13 -2.56 9.30 22.27 0.21 -2.35 16 6 C -0.06 -1.35 5.61 -19.87 -0.11 -1.46 16 7 C -0.09 -1.99 5.56 -11.54 -0.06 -2.06 16 8 H 0.11 2.90 7.67 -2.39 -0.02 2.88 16 9 C -0.12 -2.28 9.56 30.59 0.29 -1.99 16 10 C -0.19 -4.70 5.82 -11.54 -0.07 -4.77 16 11 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 12 C 0.54 17.05 7.61 87.66 0.67 17.72 16 13 O -0.58 -22.07 16.26 -3.06 -0.05 -22.12 16 14 N -0.71 -22.37 5.39 -463.06 -2.49 -24.87 16 15 C 0.13 4.11 5.12 86.38 0.44 4.55 16 16 C 0.17 5.77 2.84 44.99 0.13 5.89 16 17 H 0.08 2.76 8.08 -2.39 -0.02 2.74 16 18 C 0.06 2.00 6.86 71.98 0.49 2.50 16 19 O -0.58 -18.63 12.64 -148.98 -1.88 -20.52 16 20 N -0.74 -32.56 4.31 -322.94 -1.39 -33.95 16 21 C -0.22 -11.72 10.41 84.03 0.87 -10.85 16 22 H 0.07 3.94 8.06 -2.91 -0.02 3.92 16 23 C -0.05 -2.94 5.50 84.86 0.47 -2.47 16 24 N -0.98 -60.59 13.97 21.65 0.30 -60.29 16 25 Si 0.94 45.69 27.74 68.60 1.90 47.59 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 27 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 28 H -0.27 -12.65 6.52 99.48 0.65 -12.00 16 29 C -0.13 -2.95 9.39 22.27 0.21 -2.75 16 30 H 0.08 0.95 8.14 -2.38 -0.02 0.94 16 31 H 0.08 0.90 8.09 -2.39 -0.02 0.89 16 32 H 0.06 0.94 8.09 -2.39 -0.02 0.92 16 33 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 34 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.14 2.11 6.02 -2.91 -0.02 2.09 16 36 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.13 1.85 6.17 -2.39 -0.01 1.83 16 38 H 0.41 12.76 8.14 -92.71 -0.75 12.01 16 39 H 0.06 2.06 7.40 -2.39 -0.02 2.04 16 40 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.39 8.46 9.12 -74.06 -0.68 7.79 16 44 H 0.36 16.54 5.66 -92.71 -0.52 16.02 16 45 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 46 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -72.35 384.07 -0.04 -72.39 By element: Atomic # 1 Polarization: 47.54 SS G_CDS: -1.00 Total: 46.54 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 4.57 Total: -4.78 kcal Atomic # 7 Polarization: -115.53 SS G_CDS: -3.58 Total: -119.11 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -1.93 Total: -42.63 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.90 Total: 47.59 kcal Total: -72.35 -0.04 -72.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755641916.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.798 kcal (2) G-P(sol) polarization free energy of solvation -72.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds