Wall clock time and date at job start Tue Mar 31 2020 12:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48504 * 109.47118 * 239.99951 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00057 * 3 2 1 7 7 C 1.40028 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.41318 * 119.99754 * 0.27874 * 7 2 1 10 10 C 1.40586 * 119.78079 * 179.71798 * 9 7 2 11 11 C 1.38349 * 119.14321 * 179.97438 * 10 9 7 12 12 C 1.38631 * 118.68316 * 0.02562 * 11 10 9 13 13 C 1.39753 * 119.49322 * 0.02562 * 12 11 10 14 14 N 1.38826 * 119.58651 * 180.02562 * 13 12 11 15 15 C 1.46847 * 110.99863 * 55.78858 * 14 13 12 16 16 C 1.53045 * 109.52131 * 185.83868 * 15 14 13 17 17 C 1.53120 * 109.27736 * 300.81886 * 16 15 14 18 18 O 1.42904 * 109.51982 * 177.56008 * 17 16 15 19 19 C 1.42899 * 113.99745 * 90.31875 * 18 17 16 20 20 H 1.09001 * 110.45722 * 330.69264 * 19 18 17 21 21 C 1.54516 * 110.50878 * 208.09318 * 19 18 17 22 22 C 1.54476 * 104.06462 * 241.35677 * 21 19 18 23 23 O 1.44427 * 104.80107 * 23.98016 * 22 21 19 24 24 C 1.44789 * 105.29449 * 319.45232 * 23 22 21 25 25 C 1.53119 * 109.15823 * 57.65597 * 17 16 15 26 26 C 1.46853 * 111.00183 * 179.97438 * 14 13 12 27 27 N 1.31989 * 120.83024 * 359.71595 * 13 12 11 28 28 H 0.97005 * 120.00071 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.43318 * 359.97438 * 10 9 7 30 30 H 1.08008 * 120.65568 * 180.02562 * 11 10 9 31 31 H 1.08001 * 120.25555 * 180.02562 * 12 11 10 32 32 H 1.08997 * 109.45962 * 305.85297 * 15 14 13 33 33 H 1.08998 * 109.46584 * 65.82676 * 15 14 13 34 34 H 1.09002 * 109.50133 * 180.87488 * 16 15 14 35 35 H 1.09004 * 109.50058 * 60.76210 * 16 15 14 36 36 H 1.09003 * 109.52378 * 297.74772 * 17 16 15 37 37 H 1.09002 * 110.50750 * 0.02562 * 21 19 18 38 38 H 1.08997 * 110.51119 * 122.56914 * 21 19 18 39 39 H 1.08997 * 110.37165 * 142.80988 * 22 21 19 40 40 H 1.08995 * 110.37119 * 265.14409 * 22 21 19 41 41 H 1.09003 * 110.42345 * 281.77913 * 24 23 22 42 42 H 1.09003 * 110.48327 * 159.32905 * 24 23 22 43 43 H 1.09007 * 109.49770 * 182.40184 * 25 17 16 44 44 H 1.08998 * 109.50565 * 62.28821 * 25 17 16 45 45 H 1.08996 * 109.46525 * 294.18121 * 26 14 13 46 46 H 1.09004 * 109.45814 * 54.14737 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0877 -1.2126 0.0001 9 6 1.3011 -2.4365 -0.0049 10 6 2.0087 -3.6513 -0.0103 11 6 1.3036 -4.8417 -0.0150 12 6 -0.0819 -4.7944 -0.0148 13 6 -0.7280 -3.5552 -0.0103 14 7 -2.1154 -3.5056 -0.0095 15 6 -2.6683 -4.2610 1.1220 16 6 -4.1939 -4.3068 1.0096 17 6 -4.7439 -2.8778 1.0083 18 8 -6.1633 -2.9125 0.8464 19 6 -6.8872 -2.9745 2.0769 20 1 -6.2986 -3.4840 2.8399 21 6 -8.2423 -3.6882 1.8724 22 6 -9.2909 -2.6163 2.2436 23 8 -8.6160 -1.3552 2.0437 24 6 -7.2742 -1.5557 2.5493 25 6 -4.1156 -2.0986 -0.1506 26 6 -2.5924 -2.1168 -0.0040 27 7 -0.0358 -2.4314 -0.0008 28 1 -0.4850 0.8401 -0.0004 29 1 3.0886 -3.6553 -0.0108 30 1 1.8224 -5.7890 -0.0188 31 1 -0.6575 -5.7082 -0.0180 32 1 -2.2725 -5.2764 1.1088 33 1 -2.3875 -3.7739 2.0557 34 1 -4.6050 -4.8542 1.8578 35 1 -4.4757 -4.8061 0.0825 36 1 -4.4957 -2.3910 1.9515 37 1 -8.3598 -3.9941 0.8328 38 1 -8.3236 -4.5504 2.5343 39 1 -10.1582 -2.6907 1.5876 40 1 -9.5918 -2.7247 3.2856 41 1 -7.2661 -1.5028 3.6380 42 1 -6.5932 -0.8164 2.1276 43 1 -4.4709 -1.0683 -0.1311 44 1 -4.3962 -2.5631 -1.0959 45 1 -2.3119 -1.6401 0.9351 46 1 -2.1414 -1.5746 -0.8352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771732025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:19 Heat of formation + Delta-G solvation = -63.880516 kcal Electronic energy + Delta-G solvation = -27098.557718 eV Core-core repulsion = 23373.442020 eV Total energy + Delta-G solvation = -3725.115698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.19612 -40.50540 -39.17299 -37.57986 -35.46562 -33.76384 -32.57480 -32.03212 -31.66491 -30.34153 -29.51502 -27.47933 -25.20286 -24.49383 -23.75087 -22.81120 -22.25306 -22.04304 -20.75719 -19.36083 -18.31294 -17.98030 -17.35891 -16.86639 -16.55025 -16.38822 -16.29347 -16.07839 -15.67488 -15.51464 -15.07150 -14.89029 -14.66754 -14.12703 -14.04323 -13.78814 -13.63543 -13.28920 -13.08258 -13.02490 -12.82714 -12.76361 -12.59663 -12.46758 -12.32586 -12.17311 -12.14468 -11.88534 -11.82648 -11.68646 -11.41913 -11.24011 -10.91932 -10.47585 -10.28819 -9.91719 -9.49348 -8.76657 -8.28097 -6.49588 0.89924 1.19508 1.40493 1.51421 1.54537 2.22636 2.53964 2.77670 2.99725 3.00181 3.56866 3.75064 3.79851 3.88399 3.94544 4.04682 4.10522 4.16192 4.19957 4.34034 4.35876 4.41509 4.49179 4.53851 4.63522 4.67302 4.73739 4.75909 4.81861 4.84007 4.88657 4.93981 4.94597 4.98488 5.08843 5.10537 5.17662 5.27491 5.30189 5.39590 5.67040 5.76022 5.89646 5.98758 6.02614 6.31070 6.33226 6.50243 6.79508 7.06533 8.18377 8.44851 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015996 B = 0.003294 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.038054 B = 8498.801195 C = 9998.024449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.028 3.972 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.261 1.261 7 C -0.467 4.467 8 H 0.086 0.914 9 C 0.240 3.760 10 C -0.320 4.320 11 C -0.042 4.042 12 C -0.323 4.323 13 C 0.304 3.696 14 N -0.482 5.482 15 C 0.068 3.932 16 C -0.122 4.122 17 C 0.096 3.904 18 O -0.378 6.378 19 C 0.047 3.953 20 H 0.095 0.905 21 C -0.149 4.149 22 C 0.040 3.960 23 O -0.403 6.403 24 C 0.019 3.981 25 C -0.107 4.107 26 C 0.100 3.900 27 N -0.535 5.535 28 H 0.277 0.723 29 H 0.106 0.894 30 H 0.133 0.867 31 H 0.121 0.879 32 H 0.090 0.910 33 H 0.025 0.975 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.024 0.976 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.052 -5.418 6.801 17.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.194 4.194 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.498 4.498 8 H 0.104 0.896 9 C 0.114 3.886 10 C -0.343 4.343 11 C -0.066 4.066 12 C -0.348 4.348 13 C 0.066 3.934 14 N -0.201 5.201 15 C -0.058 4.058 16 C -0.160 4.160 17 C 0.038 3.962 18 O -0.297 6.297 19 C -0.011 4.011 20 H 0.113 0.887 21 C -0.186 4.186 22 C -0.036 4.036 23 O -0.322 6.322 24 C -0.058 4.058 25 C -0.145 4.145 26 C -0.028 4.028 27 N -0.253 5.253 28 H 0.087 0.913 29 H 0.124 0.876 30 H 0.151 0.849 31 H 0.139 0.861 32 H 0.108 0.892 33 H 0.044 0.956 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.130 0.870 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.042 0.958 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.065 -4.508 6.116 17.772 hybrid contribution 1.673 0.193 0.628 1.797 sum -14.392 -4.315 6.744 16.469 Atomic orbital electron populations 1.70200 1.08483 1.28757 1.29092 1.26878 0.95795 1.04082 0.92655 0.85254 0.78674 0.75860 0.79840 1.18667 1.19325 1.18521 1.19886 0.94606 0.90415 1.44920 0.89631 1.18817 0.88188 0.93308 0.88321 1.21819 0.99241 0.93755 1.19439 1.21109 0.93762 0.97426 0.94332 1.21030 0.94743 0.96348 1.22670 1.20316 0.89608 0.90656 0.92791 1.59216 1.04171 1.15039 1.41656 1.22137 0.95437 0.98648 0.89601 1.22025 0.92688 0.97148 1.04118 1.22121 0.80350 0.95643 0.98089 1.88017 1.17227 1.94404 1.30084 1.23762 0.94437 0.95610 0.87303 0.88720 1.23093 0.91840 0.99313 1.04362 1.23629 0.95976 0.81823 1.02207 1.89182 1.24799 1.34362 1.83864 1.24152 0.84448 0.97711 0.99480 1.21661 0.93185 1.00566 0.99060 1.21468 0.92919 0.87265 1.01134 1.68642 1.08018 1.26366 1.22302 0.91283 0.87629 0.84884 0.86126 0.89156 0.95629 0.88581 0.90430 0.92042 0.90181 0.87010 0.88079 0.90203 0.89495 0.89904 0.90807 0.91204 0.95790 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.02 11.46 21.84 0.25 -38.77 16 2 C 0.03 1.44 5.50 85.29 0.47 1.91 16 3 Si 0.98 38.19 29.56 68.60 2.03 40.22 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 6 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.47 -25.44 9.14 23.46 0.21 -25.23 16 8 H 0.09 4.39 7.85 -2.91 -0.02 4.36 16 9 C 0.24 13.45 6.55 40.19 0.26 13.71 16 10 C -0.32 -16.00 9.83 22.87 0.22 -15.77 16 11 C -0.04 -1.86 10.15 22.39 0.23 -1.63 16 12 C -0.32 -14.39 9.20 22.73 0.21 -14.19 16 13 C 0.30 14.81 6.41 133.40 0.86 15.67 16 14 N -0.48 -19.83 4.68 -701.88 -3.28 -23.11 16 15 C 0.07 2.21 5.24 86.33 0.45 2.67 16 16 C -0.12 -3.08 5.72 30.65 0.18 -2.91 16 17 C 0.10 2.58 2.52 30.67 0.08 2.65 16 18 O -0.38 -9.67 9.63 -148.98 -1.43 -11.11 16 19 C 0.05 0.89 3.38 31.61 0.11 1.00 16 20 H 0.09 1.44 7.80 -2.39 -0.02 1.42 16 21 C -0.15 -2.20 6.90 31.61 0.22 -1.98 16 22 C 0.04 0.61 7.63 72.48 0.55 1.16 16 23 O -0.40 -9.49 11.66 -148.98 -1.74 -11.22 16 24 C 0.02 0.38 7.40 72.48 0.54 0.92 16 25 C -0.11 -3.48 5.75 30.65 0.18 -3.30 16 26 C 0.10 4.12 4.64 86.32 0.40 4.52 16 27 N -0.53 -29.46 6.16 -186.59 -1.15 -30.61 16 28 H 0.28 13.25 8.29 -92.70 -0.77 12.48 16 29 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 30 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 31 H 0.12 4.65 7.13 -2.91 -0.02 4.63 16 32 H 0.09 2.76 6.65 -2.39 -0.02 2.74 16 33 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 1.85 8.10 -2.39 -0.02 1.83 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.06 1.61 7.81 -2.39 -0.02 1.59 16 37 H 0.08 1.38 8.00 -2.39 -0.02 1.36 16 38 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 1.91 8.09 -2.39 -0.02 1.89 16 43 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 44 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.02 1.09 8.11 -2.39 -0.02 1.07 16 46 H 0.06 3.07 7.71 -2.38 -0.02 3.05 16 Total: -1.00 -65.80 367.20 0.79 -65.01 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.96 Total: 30.41 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 5.16 Total: -20.81 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -4.18 Total: -92.50 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -3.17 Total: -22.33 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Total: -65.80 0.79 -65.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771732025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.129 kcal (2) G-P(sol) polarization free energy of solvation -65.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds