Wall clock time and date at job start Tue Mar 31 2020 13:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38133 * 119.96214 * 2 1 4 4 C 1.38448 * 120.36176 * 180.02562 * 3 2 1 5 5 C 1.37898 * 120.27541 * 359.97438 * 4 3 2 6 6 C 1.39531 * 119.92018 * 359.97438 * 5 4 3 7 7 C 1.47775 * 120.17918 * 179.97438 * 6 5 4 8 8 O 1.35254 * 120.00119 * 0.02562 * 7 6 5 9 9 N 1.30094 * 120.00247 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00394 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47006 * 115.00044 * 10 9 7 12 12 C 1.53042 * 109.45658 * 185.00349 * 11 10 9 13 13 C 1.53198 * 109.31086 * 178.61499 * 12 11 10 14 14 N 1.46926 * 108.89429 * 54.55921 * 13 12 11 15 15 C 1.36937 * 120.62571 * 126.46041 * 14 13 12 16 16 H 1.07997 * 120.00221 * 332.73438 * 15 14 13 17 17 C 1.38818 * 119.99512 * 152.73441 * 15 14 13 18 18 N 1.31619 * 119.99922 * 159.41180 * 17 15 14 19 19 Si 1.86800 * 120.00017 * 339.41150 * 17 15 14 20 20 H 1.48500 * 109.47149 * 92.90848 * 19 17 15 21 21 H 1.48502 * 109.46858 * 212.90584 * 19 17 15 22 22 H 1.48494 * 109.47186 * 332.90612 * 19 17 15 23 23 C 1.46952 * 118.71485 * 306.64327 * 14 13 12 24 24 C 1.53034 * 109.46365 * 64.93522 * 11 10 9 25 25 C 1.38632 * 119.95949 * 180.25614 * 2 1 3 26 26 O 1.35723 * 120.13877 * 359.97438 * 25 2 1 27 27 H 1.09001 * 109.47403 * 89.99996 * 1 2 3 28 28 H 1.09004 * 109.47200 * 210.00214 * 1 2 3 29 29 H 1.09000 * 109.47210 * 330.00011 * 1 2 3 30 30 H 1.08005 * 119.81740 * 0.02562 * 3 2 1 31 31 H 1.07998 * 119.85984 * 179.97438 * 4 3 2 32 32 H 1.08005 * 120.03715 * 179.97438 * 5 4 3 33 33 H 0.96705 * 113.99517 * 359.97438 * 8 7 6 34 34 H 1.09002 * 109.47006 * 355.00123 * 10 9 7 35 35 H 1.09001 * 109.47218 * 234.99736 * 10 9 7 36 36 H 1.09001 * 109.46295 * 304.97159 * 11 10 9 37 37 H 1.08993 * 109.49979 * 58.66422 * 12 11 10 38 38 H 1.08993 * 109.49864 * 298.56277 * 12 11 10 39 39 H 1.09004 * 109.58728 * 174.42371 * 13 12 11 40 40 H 1.09000 * 109.58513 * 294.70045 * 13 12 11 41 41 H 0.96996 * 120.00085 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.46884 * 293.57037 * 23 14 13 43 43 H 1.09007 * 109.71303 * 173.28716 * 23 14 13 44 44 H 1.09004 * 109.49724 * 301.33069 * 24 11 10 45 45 H 1.08996 * 109.49993 * 61.42831 * 24 11 10 46 46 H 0.96703 * 114.00158 * 270.21054 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1967 0.0000 4 6 3.5813 1.2064 -0.0005 5 6 4.2848 0.0203 -0.0005 6 6 3.5998 -1.1952 0.0005 7 6 4.3479 -2.4696 0.0000 8 8 5.7004 -2.4598 -0.0011 9 7 3.7057 -3.6009 0.0015 10 6 4.4474 -4.8644 0.0015 11 6 4.1813 -5.6119 1.3096 12 6 5.0514 -6.8698 1.3640 13 6 4.8079 -7.5972 2.6901 14 7 3.3684 -7.8525 2.8354 15 6 2.9057 -9.1174 3.0830 16 1 3.4738 -9.9745 2.7527 17 6 1.7065 -9.2979 3.7586 18 7 1.0567 -10.4376 3.6529 19 14 1.0151 -7.9232 4.8177 20 1 0.0790 -7.0998 4.0109 21 1 0.2899 -8.5068 5.9747 22 1 2.1268 -7.0703 5.3094 23 6 2.4347 -6.7251 2.7059 24 6 2.7047 -6.0075 1.3796 25 6 2.1993 -1.2011 -0.0054 26 8 1.5227 -2.3776 -0.0101 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6533 2.1300 0.0004 31 1 4.1125 2.1467 -0.0009 32 1 5.3648 0.0324 -0.0014 33 1 6.0873 -1.5735 -0.0018 34 1 5.5141 -4.6595 -0.0894 35 1 4.1220 -5.4767 -0.8395 36 1 4.4243 -4.9656 2.1531 37 1 6.1019 -6.5889 1.2907 38 1 4.7915 -7.5280 0.5350 39 1 5.3490 -8.5434 2.6925 40 1 5.1542 -6.9763 3.5164 41 1 0.2190 -10.5638 4.1253 42 1 2.5850 -6.0320 3.5336 43 1 1.4090 -7.0938 2.7197 44 1 2.0850 -5.1130 1.3174 45 1 2.4668 -6.6738 0.5504 46 1 1.3242 -2.7207 0.8719 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331237456.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:10 Heat of formation + Delta-G solvation = -21.295613 kcal Electronic energy + Delta-G solvation = -26941.072977 eV Core-core repulsion = 23217.803899 eV Total energy + Delta-G solvation = -3723.269078 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.52658 -38.76440 -37.87480 -36.74561 -34.77605 -33.29293 -32.63776 -31.12976 -30.25435 -30.16300 -27.21984 -26.97616 -24.43578 -23.05837 -22.57555 -21.91331 -21.08974 -20.43693 -19.21372 -18.78089 -17.79601 -16.71620 -16.51766 -15.91110 -15.38579 -15.21235 -14.91403 -14.58738 -14.22578 -14.11846 -13.85147 -13.56683 -13.44165 -13.32776 -13.02021 -12.73479 -12.61630 -12.35710 -12.26981 -12.24805 -12.02395 -11.71517 -11.60959 -11.27122 -10.72217 -10.63521 -10.60456 -10.36202 -10.05995 -9.93804 -9.78608 -9.50543 -9.45027 -9.16444 -8.92003 -8.59212 -8.46578 -6.86780 -5.87367 -3.21626 0.50294 0.89541 2.43643 3.36018 3.38137 3.50392 3.53133 3.57649 3.98061 4.04018 4.32949 4.48304 4.60719 4.78332 4.87014 5.06524 5.10947 5.18049 5.31273 5.33138 5.36523 5.38795 5.48344 5.55274 5.64767 5.80573 5.87648 5.90501 5.96774 5.97913 6.06157 6.11140 6.19992 6.24698 6.35194 6.39635 6.53497 6.66390 6.70187 6.78822 6.81050 6.87544 7.14531 7.32917 7.64211 7.89763 8.06020 8.40811 9.03774 9.81137 10.20783 11.29020 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.003374 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.276887 B = 8297.294919 C = 9478.243050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.118 4.118 3 C -0.091 4.091 4 C -0.128 4.128 5 C -0.099 4.099 6 C -0.105 4.105 7 C 0.349 3.651 8 O -0.512 6.512 9 N -0.481 5.481 10 C 0.046 3.954 11 C -0.067 4.067 12 C -0.129 4.129 13 C 0.151 3.849 14 N -0.607 5.607 15 C -0.256 4.256 16 H 0.084 0.916 17 C 0.021 3.979 18 N -0.911 5.911 19 Si 0.884 3.116 20 H -0.288 1.288 21 H -0.305 1.305 22 H -0.272 1.272 23 C 0.125 3.875 24 C -0.118 4.118 25 C 0.166 3.834 26 O -0.465 6.465 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.391 0.609 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.019 0.981 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.507 27.236 -8.399 29.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.119 4.119 3 C -0.110 4.110 4 C -0.146 4.146 5 C -0.119 4.119 6 C -0.107 4.107 7 C 0.123 3.877 8 O -0.309 6.309 9 N -0.214 5.214 10 C -0.082 4.082 11 C -0.086 4.086 12 C -0.168 4.168 13 C 0.025 3.975 14 N -0.331 5.331 15 C -0.384 4.384 16 H 0.102 0.898 17 C -0.177 4.177 18 N -0.555 5.555 19 Si 0.715 3.285 20 H -0.216 1.216 21 H -0.233 1.233 22 H -0.197 1.197 23 C 0.000 4.000 24 C -0.157 4.157 25 C 0.118 3.882 26 O -0.276 6.276 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.245 0.755 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.037 0.963 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 4.659 26.090 -8.935 27.968 hybrid contribution 0.602 1.257 1.062 1.752 sum 5.261 27.347 -7.873 28.940 Atomic orbital electron populations 1.20675 0.90109 1.02979 1.02818 1.20319 0.97204 0.92330 1.01999 1.21091 0.94172 0.97360 0.98365 1.20950 0.94168 0.97780 1.01658 1.20963 0.99592 0.91376 1.00003 1.19229 0.93527 0.91031 1.06942 1.22097 0.79271 0.92849 0.93495 1.85033 1.19753 1.35848 1.90226 1.73139 1.32718 0.97312 1.18204 1.22145 0.96754 0.90004 0.99343 1.21002 0.96969 0.95625 0.95037 1.22041 0.97571 0.96567 1.00664 1.20878 0.85701 0.97773 0.93185 1.44369 1.00202 1.05201 1.83348 1.18942 1.05925 0.82951 1.30612 0.89821 1.25268 0.97432 0.96055 0.98975 1.69843 1.15950 1.25400 1.44281 0.86914 0.78529 0.82256 0.80777 1.21617 1.23322 1.19746 1.21346 0.94911 0.89605 0.94136 1.21939 0.94684 0.99471 0.99615 1.18253 0.88202 0.85964 0.95782 1.84789 1.75033 1.34420 1.33337 0.90832 0.90927 0.91528 0.85342 0.85237 0.85552 0.75460 0.93122 0.90107 0.92428 0.93005 0.91842 0.92013 0.96339 0.92880 0.96293 0.91189 0.92142 0.92032 0.74657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.78 36.01 0.35 -0.45 16 2 C -0.12 -1.05 5.89 -104.51 -0.62 -1.66 16 3 C -0.09 -0.64 9.68 -39.54 -0.38 -1.02 16 4 C -0.13 -0.82 10.03 -39.63 -0.40 -1.21 16 5 C -0.10 -0.72 9.48 -39.22 -0.37 -1.09 16 6 C -0.11 -1.10 5.88 -104.84 -0.62 -1.72 16 7 C 0.35 4.39 7.93 -14.39 -0.11 4.28 16 8 O -0.51 -5.55 12.00 -17.46 -0.21 -5.76 16 9 N -0.48 -7.21 7.82 -59.27 -0.46 -7.67 16 10 C 0.05 0.73 5.72 -4.04 -0.02 0.71 16 11 C -0.07 -1.17 2.36 -90.58 -0.21 -1.38 16 12 C -0.13 -2.28 5.36 -26.61 -0.14 -2.42 16 13 C 0.15 3.15 6.51 -3.71 -0.02 3.13 16 14 N -0.61 -15.20 2.78 -172.29 -0.48 -15.68 16 15 C -0.26 -7.44 10.04 -15.06 -0.15 -7.59 16 16 H 0.08 2.58 8.05 -52.49 -0.42 2.16 16 17 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 18 N -0.91 -28.75 13.97 55.49 0.78 -27.97 16 19 Si 0.88 23.21 24.35 -169.99 -4.14 19.07 16 20 H -0.29 -7.28 6.62 56.52 0.37 -6.91 16 21 H -0.30 -8.08 7.11 56.52 0.40 -7.68 16 22 H -0.27 -7.06 6.63 56.52 0.37 -6.69 16 23 C 0.13 2.90 4.20 -3.70 -0.02 2.88 16 24 C -0.12 -2.28 5.26 -26.61 -0.14 -2.42 16 25 C 0.17 1.82 6.68 -38.76 -0.26 1.56 16 26 O -0.46 -5.66 10.42 -18.87 -0.20 -5.86 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.56 7.54 -51.93 -0.39 0.17 16 29 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 31 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 32 H 0.13 0.50 6.29 -52.48 -0.33 0.17 16 33 H 0.39 2.18 6.65 45.56 0.30 2.48 16 34 H 0.05 0.78 6.74 -51.93 -0.35 0.43 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.28 7.93 -51.93 -0.41 0.86 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 42 H 0.02 0.44 7.07 -51.93 -0.37 0.07 16 43 H 0.07 1.76 4.50 -51.92 -0.23 1.53 16 44 H 0.06 1.07 7.72 -51.93 -0.40 0.67 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.39 3.99 9.06 45.56 0.41 4.40 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -35.36 362.80 -8.06 -43.42 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.61 Total: 2.88 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -3.21 Total: -7.89 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.17 Total: -51.32 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.41 Total: -11.62 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.14 Total: 19.07 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.36 -8.06 -43.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331237456.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.122 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds