Wall clock time and date at job start Tue Mar 31 2020 13:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35649 * 116.99728 * 2 1 4 4 C 1.38703 * 120.15316 * 0.02562 * 3 2 1 5 5 C 1.38051 * 120.08553 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.80683 * 179.97438 * 5 4 3 7 7 C 1.38554 * 120.39292 * 359.97438 * 5 4 3 8 8 C 1.37790 * 120.29352 * 359.74281 * 7 5 4 9 9 C 1.39700 * 119.91169 * 0.52690 * 8 7 5 10 10 C 1.47534 * 120.19444 * 179.74598 * 9 8 7 11 11 O 1.21587 * 120.00121 * 179.72377 * 10 9 8 12 12 N 1.34779 * 120.00125 * 359.72831 * 10 9 8 13 13 C 1.46494 * 120.00348 * 179.72097 * 12 10 9 14 14 C 1.53039 * 109.46094 * 275.34775 * 13 12 10 15 15 C 1.53196 * 109.31399 * 178.61521 * 14 13 12 16 16 N 1.46923 * 108.77363 * 54.63015 * 15 14 13 17 17 C 1.36939 * 120.63268 * 126.41750 * 16 15 14 18 18 H 1.08001 * 119.99543 * 332.60956 * 17 16 15 19 19 C 1.38808 * 120.00432 * 152.60122 * 17 16 15 20 20 N 1.31626 * 120.00027 * 159.34299 * 19 17 16 21 21 Si 1.86800 * 120.00028 * 339.35059 * 19 17 16 22 22 H 1.48503 * 109.47058 * 92.94006 * 21 19 17 23 23 H 1.48497 * 109.47130 * 212.93676 * 21 19 17 24 24 H 1.48494 * 109.47169 * 332.93933 * 21 19 17 25 25 C 1.46928 * 118.74245 * 306.38975 * 16 15 14 26 26 C 1.53037 * 109.46002 * 155.27409 * 13 12 10 27 27 H 1.08999 * 109.47286 * 60.00024 * 1 2 3 28 28 H 1.09009 * 109.47013 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47685 * 299.99754 * 1 2 3 30 30 H 1.08002 * 119.95724 * 359.97438 * 4 3 2 31 31 H 1.08997 * 109.47379 * 90.00057 * 6 5 4 32 32 H 1.09002 * 109.47438 * 210.00387 * 6 5 4 33 33 H 1.09006 * 109.46793 * 330.00058 * 6 5 4 34 34 H 1.07990 * 119.85118 * 180.02562 * 7 5 4 35 35 H 1.08004 * 120.04377 * 180.28208 * 8 7 5 36 36 H 0.97005 * 119.99200 * 359.97438 * 12 10 9 37 37 H 1.09003 * 109.46043 * 35.30291 * 13 12 10 38 38 H 1.09003 * 109.49248 * 298.56357 * 14 13 12 39 39 H 1.08995 * 109.49804 * 58.65777 * 14 13 12 40 40 H 1.08999 * 109.58293 * 294.84643 * 15 14 13 41 41 H 1.08995 * 109.70646 * 174.48826 * 15 14 13 42 42 H 0.96993 * 119.99762 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.58922 * 293.82451 * 25 16 15 44 44 H 1.09001 * 109.70671 * 173.46651 * 25 16 15 45 45 H 1.08998 * 109.49819 * 301.34110 * 26 13 12 46 46 H 1.09002 * 109.49750 * 61.43596 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3739 0.0005 5 6 1.9205 3.6032 0.0011 6 6 1.0969 4.8653 0.0011 7 6 3.3037 3.6837 0.0016 8 6 4.0667 2.5363 0.0070 9 6 3.4441 1.2857 0.0007 10 6 4.2550 0.0532 0.0007 11 8 3.7094 -1.0335 0.0004 12 7 5.6005 0.1317 0.0013 13 6 6.4056 -1.0921 0.0075 14 6 6.5726 -1.5853 1.4465 15 6 7.3857 -2.8837 1.4461 16 7 8.6514 -2.6488 0.7379 17 6 9.8489 -2.9455 1.3322 18 1 9.9371 -2.9257 2.4084 19 6 10.9492 -3.2720 0.5515 20 7 12.1637 -3.1606 1.0465 21 14 10.7063 -3.8691 -1.2018 22 1 10.7792 -2.7142 -2.1326 23 1 11.7696 -4.8478 -1.5432 24 1 9.3770 -4.5197 -1.3234 25 6 8.6079 -2.0900 -0.6203 26 6 7.7812 -0.8005 -0.5966 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2137 2.3194 0.0005 31 1 0.8979 5.1694 1.0287 32 1 1.6438 5.6561 -0.5124 33 1 0.1532 4.6832 -0.5132 34 1 3.7860 4.6499 0.0024 35 1 5.1446 2.6037 0.0120 36 1 6.0356 0.9986 0.0012 37 1 5.9049 -1.8593 -0.5833 38 1 7.0954 -0.8289 2.0319 39 1 5.5915 -1.7705 1.8838 40 1 6.8228 -3.6670 0.9384 41 1 7.5921 -3.1885 2.4720 42 1 12.9325 -3.3884 0.5008 43 1 8.1448 -2.8086 -1.2964 44 1 9.6200 -1.8690 -0.9593 45 1 7.6603 -0.4271 -1.6134 46 1 8.2926 -0.0515 0.0081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614828811.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:56 Heat of formation + Delta-G solvation = -24.537693 kcal Electronic energy + Delta-G solvation = -26746.184837 eV Core-core repulsion = 23022.775172 eV Total energy + Delta-G solvation = -3723.409665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.78330 -39.25918 -37.86230 -37.40924 -34.48030 -33.24834 -31.99950 -30.50408 -30.36982 -29.99739 -28.25625 -27.15777 -24.87857 -23.07331 -22.70645 -22.42699 -21.61167 -20.28686 -19.64643 -18.26126 -17.23910 -16.75796 -16.54282 -16.02451 -15.67019 -15.15552 -14.86337 -14.67001 -14.53587 -14.12005 -14.03951 -14.00445 -13.72941 -13.47961 -13.06506 -12.89520 -12.64764 -12.43909 -12.40824 -12.27786 -11.94226 -11.78419 -11.73364 -11.45137 -11.22359 -10.91584 -10.78209 -10.50010 -10.22953 -10.10137 -9.81204 -9.57198 -9.42189 -9.19567 -8.72873 -8.60108 -8.42323 -6.95702 -5.92561 -3.28004 0.62731 1.11639 2.86028 3.03141 3.31985 3.33560 3.51329 3.55348 3.70846 4.30869 4.39822 4.55430 4.67855 4.75337 4.83877 4.88685 4.95880 5.00399 5.13603 5.16563 5.21611 5.25394 5.28655 5.36381 5.38057 5.45716 5.64520 5.73731 5.85475 5.87686 5.94690 6.09197 6.16485 6.18285 6.22683 6.39603 6.40663 6.47567 6.62035 6.69791 6.70387 6.84149 6.97600 7.13889 7.73240 7.99043 8.35602 8.45783 8.96819 9.74668 10.12792 11.23502 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025277 B = 0.002786 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.478050 B =10046.630804 C =10555.170967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.278 6.278 3 C 0.187 3.813 4 C -0.224 4.224 5 C -0.024 4.024 6 C -0.119 4.119 7 C -0.169 4.169 8 C -0.043 4.043 9 C -0.174 4.174 10 C 0.557 3.443 11 O -0.521 6.521 12 N -0.724 5.724 13 C 0.153 3.847 14 C -0.141 4.141 15 C 0.151 3.849 16 N -0.607 5.607 17 C -0.258 4.258 18 H 0.086 0.914 19 C 0.022 3.978 20 N -0.909 5.909 21 Si 0.881 3.119 22 H -0.289 1.289 23 H -0.303 1.303 24 H -0.270 1.270 25 C 0.130 3.870 26 C -0.140 4.140 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.133 0.867 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.394 0.606 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.025 0.975 41 H 0.065 0.935 42 H 0.262 0.738 43 H 0.027 0.973 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.910 16.664 -3.372 29.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.189 6.189 3 C 0.139 3.861 4 C -0.242 4.242 5 C -0.025 4.025 6 C -0.176 4.176 7 C -0.187 4.187 8 C -0.062 4.062 9 C -0.178 4.178 10 C 0.343 3.657 11 O -0.398 6.398 12 N -0.375 5.375 13 C 0.049 3.951 14 C -0.181 4.181 15 C 0.025 3.975 16 N -0.330 5.330 17 C -0.386 4.386 18 H 0.104 0.896 19 C -0.177 4.177 20 N -0.552 5.552 21 Si 0.712 3.288 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.195 1.195 25 C 0.003 3.997 26 C -0.180 4.180 27 H 0.073 0.927 28 H 0.121 0.879 29 H 0.073 0.927 30 H 0.151 0.849 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.228 0.772 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.045 0.955 44 H 0.095 0.905 45 H 0.077 0.923 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.038 15.594 -3.377 28.851 hybrid contribution -0.013 0.330 -1.001 1.054 sum -24.051 15.925 -4.378 29.175 Atomic orbital electron populations 1.23157 0.78897 1.04337 1.01009 1.86409 1.20603 1.25323 1.86524 1.19042 0.91012 0.84807 0.91246 1.21082 1.00129 0.91498 1.11535 1.19874 0.94047 0.94590 0.93962 1.20883 0.99404 0.94504 1.02783 1.20865 0.93018 0.98568 1.06240 1.21188 0.99975 0.90759 0.94284 1.19459 0.90885 0.94325 1.13154 1.17964 0.82161 0.88504 0.77029 1.90815 1.71595 1.28602 1.48754 1.46178 1.05695 1.10150 1.75489 1.20964 0.90651 0.85892 0.97556 1.22377 0.99964 1.00047 0.95724 1.20896 0.86430 0.93145 0.97074 1.44408 1.02488 1.72410 1.13724 1.18937 0.85215 1.41361 0.93084 0.89647 1.25285 0.95158 0.99426 0.97799 1.69840 0.97393 1.50534 1.37481 0.86969 0.77318 0.78601 0.85927 1.21640 1.23161 1.19461 1.21297 0.98846 0.91787 0.87749 1.22344 0.94810 1.01022 0.99841 0.92720 0.87940 0.92676 0.84935 0.90561 0.90972 0.91334 0.85281 0.84840 0.77191 0.89893 0.91887 0.92213 0.95698 0.91618 0.92804 0.95486 0.90539 0.92252 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.28 -3.74 8.57 -40.53 -0.35 -4.09 16 3 C 0.19 2.34 6.70 -38.69 -0.26 2.08 16 4 C -0.22 -2.08 8.67 -39.48 -0.34 -2.42 16 5 C -0.02 -0.20 5.88 -104.57 -0.62 -0.81 16 6 C -0.12 -0.61 10.00 36.01 0.36 -0.25 16 7 C -0.17 -1.40 9.67 -39.63 -0.38 -1.79 16 8 C -0.04 -0.43 9.53 -39.20 -0.37 -0.80 16 9 C -0.17 -2.27 5.89 -104.85 -0.62 -2.89 16 10 C 0.56 8.84 7.73 -12.47 -0.10 8.74 16 11 O -0.52 -10.22 14.83 -16.59 -0.25 -10.46 16 12 N -0.72 -10.38 5.03 -54.81 -0.28 -10.66 16 13 C 0.15 2.61 2.41 -67.89 -0.16 2.44 16 14 C -0.14 -2.54 5.65 -26.61 -0.15 -2.69 16 15 C 0.15 3.14 6.52 -3.71 -0.02 3.11 16 16 N -0.61 -14.64 2.77 -172.32 -0.48 -15.12 16 17 C -0.26 -7.26 10.03 -15.06 -0.15 -7.41 16 18 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 19 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 20 N -0.91 -27.99 13.97 55.49 0.78 -27.22 16 21 Si 0.88 22.56 24.35 -169.99 -4.14 18.42 16 22 H -0.29 -7.06 6.62 56.52 0.37 -6.69 16 23 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 24 H -0.27 -6.84 6.63 56.52 0.37 -6.47 16 25 C 0.13 2.84 4.20 -3.71 -0.02 2.82 16 26 C -0.14 -2.45 5.55 -26.61 -0.15 -2.59 16 27 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 28 H 0.10 0.71 8.14 -51.92 -0.42 0.28 16 29 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 30 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 33 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.13 1.02 6.40 -52.48 -0.34 0.69 16 36 H 0.39 4.48 6.63 -40.82 -0.27 4.21 16 37 H 0.08 1.57 7.58 -51.93 -0.39 1.17 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.03 0.60 7.07 -51.93 -0.37 0.23 16 44 H 0.08 1.81 4.50 -51.93 -0.23 1.58 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -34.98 362.67 -8.30 -43.27 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.97 Total: 1.13 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -2.08 Total: -0.75 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.02 Total: -52.99 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.59 Total: -14.55 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.14 Total: 18.42 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.98 -8.30 -43.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614828811.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.737 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds