Wall clock time and date at job start Tue Mar 31 2020 13:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35643 * 117.00072 * 2 1 4 4 C 1.38711 * 120.15031 * 0.22877 * 3 2 1 5 5 C 1.38063 * 120.08203 * 180.28201 * 4 3 2 6 6 C 1.38541 * 120.39181 * 359.73748 * 5 4 3 7 7 C 1.50700 * 119.85161 * 179.97438 * 6 5 4 8 8 C 1.37782 * 120.30080 * 0.02562 * 6 5 4 9 9 C 1.39708 * 119.90936 * 359.97438 * 8 6 5 10 10 C 1.47532 * 120.19316 * 179.97438 * 9 8 6 11 11 O 1.21597 * 120.00158 * 180.02562 * 10 9 8 12 12 N 1.34783 * 120.00437 * 0.02562 * 10 9 8 13 13 C 1.46494 * 120.00559 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47185 * 179.97438 * 13 12 10 15 15 H 1.09002 * 112.84984 * 43.80986 * 14 13 12 16 16 C 1.53781 * 113.61287 * 175.00110 * 14 13 12 17 17 C 1.53781 * 87.08081 * 140.06981 * 16 14 13 18 18 H 1.09003 * 113.61587 * 89.19725 * 17 16 14 19 19 N 1.46504 * 113.61261 * 220.02155 * 17 16 14 20 20 C 1.36934 * 119.99567 * 203.47008 * 19 17 16 21 21 H 1.08001 * 120.00537 * 359.97438 * 20 19 17 22 22 C 1.38811 * 119.99798 * 179.97438 * 20 19 17 23 23 N 1.31624 * 120.00134 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00229 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46793 * 299.99987 * 24 22 20 27 27 H 1.48500 * 109.47000 * 60.00079 * 24 22 20 28 28 C 1.53779 * 87.17037 * 334.60971 * 17 16 14 29 29 H 1.08998 * 109.47482 * 300.00125 * 1 2 3 30 30 H 1.08996 * 109.47015 * 60.00430 * 1 2 3 31 31 H 1.09006 * 109.47382 * 180.02562 * 1 2 3 32 32 H 1.07996 * 119.96127 * 359.97438 * 4 3 2 33 33 H 1.08004 * 119.79739 * 179.76576 * 5 4 3 34 34 H 1.09002 * 109.47544 * 270.02886 * 7 6 5 35 35 H 1.09008 * 109.46962 * 30.02325 * 7 6 5 36 36 H 1.08991 * 109.47243 * 150.02373 * 7 6 5 37 37 H 1.08004 * 120.04615 * 179.97438 * 8 6 5 38 38 H 0.96998 * 119.99137 * 0.02562 * 12 10 9 39 39 H 1.09001 * 109.46778 * 60.00171 * 13 12 10 40 40 H 1.08996 * 109.47258 * 300.00635 * 13 12 10 41 41 H 1.08999 * 113.61621 * 25.51898 * 16 14 13 42 42 H 1.09003 * 113.68893 * 254.62770 * 16 14 13 43 43 H 0.97000 * 119.99825 * 23.46188 * 19 17 16 44 44 H 0.97005 * 119.99717 * 0.02562 * 23 22 20 45 45 H 1.09003 * 113.61529 * 139.94168 * 28 17 16 46 46 H 1.09000 * 113.61712 * 270.84226 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2924 2.3739 0.0048 5 6 1.9207 3.6033 -0.0011 6 6 3.3038 3.6836 -0.0063 7 6 3.9768 5.0319 -0.0133 8 6 4.0667 2.5363 -0.0062 9 6 3.4441 1.2857 -0.0003 10 6 4.2550 0.0532 -0.0008 11 8 3.7094 -1.0335 0.0039 12 7 5.6005 0.1316 -0.0064 13 6 6.4057 -1.0922 -0.0062 14 6 7.8910 -0.7255 -0.0139 15 1 8.1312 0.0818 0.6781 16 6 8.8261 -1.9402 0.1085 17 6 9.7295 -1.2499 -0.9270 18 1 10.4732 -0.5870 -0.4846 19 7 10.3021 -2.1703 -1.9125 20 6 11.4550 -1.8367 -2.5719 21 1 11.9420 -0.8951 -2.3656 22 6 11.9978 -2.7090 -3.5053 23 7 11.4047 -3.8569 -3.7563 24 14 13.5702 -2.2538 -4.4053 25 1 13.9390 -3.3463 -5.3410 26 1 13.3576 -0.9980 -5.1689 27 1 14.6642 -2.0555 -3.4210 28 6 8.4714 -0.5190 -1.4247 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2139 2.3195 0.0081 33 1 1.3303 4.5077 -0.0012 34 1 4.1350 5.3538 -1.0426 35 1 3.3448 5.7562 0.5007 36 1 4.9373 4.9612 0.4969 37 1 5.1446 2.6037 -0.0108 38 1 6.0356 0.9985 -0.0097 39 1 6.1725 -1.6806 -0.8937 40 1 6.1797 -1.6758 0.8862 41 1 8.3833 -2.8698 -0.2491 42 1 9.2865 -2.0413 1.0913 43 1 9.8646 -3.0159 -2.0979 44 1 10.5879 -4.0931 -3.2893 45 1 8.6453 0.5269 -1.6776 46 1 7.9314 -1.0593 -2.2023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086141021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:11 Heat of formation + Delta-G solvation = -20.658928 kcal Electronic energy + Delta-G solvation = -25740.151706 eV Core-core repulsion = 22016.910237 eV Total energy + Delta-G solvation = -3723.241469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.85437 -39.33144 -38.34858 -37.91695 -34.71601 -33.57628 -32.46567 -31.71528 -29.99009 -28.22073 -27.20884 -26.28119 -25.15332 -24.19581 -23.46855 -21.90007 -21.07794 -20.44218 -19.12329 -18.57317 -17.36926 -17.03237 -16.79867 -16.10294 -15.69338 -15.24214 -15.14123 -14.89438 -14.69918 -14.47988 -14.09303 -14.02668 -13.73244 -13.47877 -13.41651 -13.15324 -12.61660 -12.45596 -12.37847 -11.99048 -11.92044 -11.85936 -11.52313 -11.47685 -11.19731 -10.93892 -10.74249 -10.37513 -10.26975 -9.97660 -9.86332 -9.72813 -9.44026 -9.10769 -8.96417 -8.85386 -8.39820 -7.02169 -6.09918 -3.09657 0.56133 1.00663 2.75419 2.96534 3.15353 3.51958 3.55652 3.58858 3.73316 4.31988 4.34917 4.49495 4.65526 4.68061 4.83381 4.86423 4.89088 4.95054 4.96738 5.07535 5.17509 5.19227 5.21488 5.27425 5.45345 5.49079 5.50593 5.55791 5.75073 5.79577 5.81339 5.86381 5.90881 5.97013 6.13909 6.23019 6.25562 6.30231 6.32501 6.46910 6.55107 6.76164 7.05525 7.05920 7.53048 7.81321 8.27640 8.75967 9.23279 10.09654 10.24947 11.38321 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018950 B = 0.002266 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.207154 B =12354.292494 C =13119.083329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.280 6.280 3 C 0.179 3.821 4 C -0.217 4.217 5 C -0.055 4.055 6 C -0.134 4.134 7 C -0.110 4.110 8 C -0.048 4.048 9 C -0.166 4.166 10 C 0.556 3.444 11 O -0.522 6.522 12 N -0.724 5.724 13 C 0.135 3.865 14 C -0.126 4.126 15 H 0.089 0.911 16 C -0.143 4.143 17 C 0.171 3.829 18 H 0.076 0.924 19 N -0.725 5.725 20 C -0.335 4.335 21 H 0.065 0.935 22 C -0.046 4.046 23 N -0.943 5.943 24 Si 1.080 2.920 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.295 1.295 28 C -0.160 4.160 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.133 0.867 38 H 0.397 0.603 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.368 0.632 44 H 0.255 0.745 45 H 0.054 0.946 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.231 17.817 11.083 30.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.191 6.191 3 C 0.131 3.869 4 C -0.236 4.236 5 C -0.073 4.073 6 C -0.135 4.135 7 C -0.167 4.167 8 C -0.066 4.066 9 C -0.170 4.170 10 C 0.343 3.657 11 O -0.398 6.398 12 N -0.377 5.377 13 C 0.012 3.988 14 C -0.146 4.146 15 H 0.107 0.893 16 C -0.183 4.183 17 C 0.059 3.941 18 H 0.093 0.907 19 N -0.364 5.364 20 C -0.466 4.466 21 H 0.083 0.917 22 C -0.243 4.243 23 N -0.588 5.588 24 Si 0.911 3.089 25 H -0.210 1.210 26 H -0.223 1.223 27 H -0.223 1.223 28 C -0.201 4.201 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.152 0.848 33 H 0.146 0.854 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.151 0.849 38 H 0.232 0.768 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.202 0.798 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.260 16.446 9.954 28.663 hybrid contribution -1.429 0.969 1.097 2.046 sum -22.689 17.415 11.051 30.663 Atomic orbital electron populations 1.23165 0.78785 1.04390 1.01073 1.86392 1.20695 1.25368 1.86606 1.19050 0.90993 0.84926 0.91965 1.21232 1.00309 0.91977 1.10098 1.20997 0.93971 0.97123 0.95214 1.19740 0.93589 0.95611 1.04519 1.20737 1.00502 0.92903 1.02517 1.21075 0.99786 0.90327 0.95446 1.19395 0.90903 0.94099 1.12572 1.17977 0.82062 0.88584 0.77118 1.90827 1.71637 1.28651 1.48692 1.45941 1.05730 1.10258 1.75746 1.21402 0.89245 0.86053 1.02146 1.22661 0.92202 0.99914 0.99779 0.89325 1.23430 0.97382 0.97042 1.00396 1.21463 0.91344 0.91921 0.89363 0.90650 1.42422 1.28572 1.19745 1.45695 1.20090 1.02043 1.04420 1.20035 0.91715 1.25803 1.04977 0.94886 0.98677 1.70884 1.20432 1.22614 1.44893 0.83242 0.74633 0.75054 0.75979 1.21029 1.22265 1.22253 1.23961 1.00649 1.00903 0.94626 0.92662 0.92614 0.87918 0.84787 0.85352 0.91128 0.91561 0.91354 0.84915 0.76831 0.91259 0.91686 0.90255 0.91887 0.79808 0.93340 0.92681 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.28 -3.58 8.57 -40.51 -0.35 -3.93 16 3 C 0.18 2.11 6.70 -38.69 -0.26 1.85 16 4 C -0.22 -1.86 9.03 -39.47 -0.36 -2.22 16 5 C -0.05 -0.41 9.68 -39.53 -0.38 -0.79 16 6 C -0.13 -1.06 5.87 -104.68 -0.61 -1.67 16 7 C -0.11 -0.60 10.00 36.01 0.36 -0.24 16 8 C -0.05 -0.44 9.18 -39.20 -0.36 -0.80 16 9 C -0.17 -2.03 5.89 -104.85 -0.62 -2.65 16 10 C 0.56 8.20 7.76 -12.47 -0.10 8.10 16 11 O -0.52 -9.69 15.16 -16.60 -0.25 -9.95 16 12 N -0.72 -9.12 5.51 -61.35 -0.34 -9.46 16 13 C 0.13 1.88 5.52 -4.05 -0.02 1.86 16 14 C -0.13 -1.74 3.75 -89.72 -0.34 -2.07 16 15 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 16 C -0.14 -2.32 7.39 -25.92 -0.19 -2.51 16 17 C 0.17 3.38 4.47 -67.12 -0.30 3.08 16 18 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 19 N -0.72 -18.33 5.41 -52.63 -0.28 -18.62 16 20 C -0.33 -9.48 9.97 -15.06 -0.15 -9.63 16 21 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 22 C -0.05 -1.35 5.50 -17.43 -0.10 -1.44 16 23 N -0.94 -29.55 13.70 55.49 0.76 -28.79 16 24 Si 1.08 26.07 29.92 -169.99 -5.09 20.99 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 28 C -0.16 -2.72 7.45 -25.83 -0.19 -2.91 16 29 H 0.05 0.31 7.65 -51.93 -0.40 -0.08 16 30 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.13 0.81 6.30 -52.49 -0.33 0.48 16 33 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.28 8.08 -51.92 -0.42 -0.14 16 36 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 37 H 0.13 0.94 6.40 -52.48 -0.34 0.61 16 38 H 0.40 3.90 6.50 -40.82 -0.27 3.64 16 39 H 0.07 1.10 7.86 -51.93 -0.41 0.69 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.37 9.65 6.74 -40.82 -0.28 9.37 16 44 H 0.26 7.89 6.77 -40.82 -0.28 7.61 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.08 1.45 7.91 -51.93 -0.41 1.04 16 LS Contribution 378.43 15.07 5.70 5.70 Total: -1.00 -35.99 378.43 -9.41 -45.40 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -6.94 Total: 9.54 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.62 Total: -10.89 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.14 Total: -56.86 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.60 Total: -13.88 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.09 Total: 20.99 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.99 -9.41 -45.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086141021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.741 kcal (2) G-P(sol) polarization free energy of solvation -35.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds