Wall clock time and date at job start Tue Mar 31 2020 13:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.50691 * 109.47102 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00231 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00000 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00273 * 179.97438 * 11 9 8 13 13 C 1.52992 * 109.47298 * 179.97438 * 12 11 9 14 14 C 1.53777 * 113.61763 * 274.14083 * 13 12 11 15 15 C 1.53956 * 87.02263 * 220.04743 * 14 13 12 16 16 N 1.46490 * 113.74402 * 139.94081 * 15 14 13 17 17 C 1.36943 * 119.99982 * 107.40698 * 16 15 14 18 18 H 1.07997 * 119.99986 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00241 * 180.02562 * 17 16 15 20 20 N 1.31626 * 119.99987 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00100 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47231 * 89.99822 * 21 19 17 23 23 H 1.48504 * 109.46897 * 209.99635 * 21 19 17 24 24 H 1.48500 * 109.46939 * 329.99354 * 21 19 17 25 25 C 1.53783 * 113.61727 * 176.52930 * 13 12 11 26 26 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 27 27 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 28 28 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 29 29 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 30 30 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 32 32 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 33 33 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 34 34 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 35 35 H 0.97001 * 120.00180 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47009 * 300.00385 * 12 11 9 37 37 H 1.09006 * 109.46365 * 60.00356 * 12 11 9 38 38 H 1.09009 * 112.84700 * 45.33828 * 13 12 11 39 39 H 1.09005 * 113.61566 * 334.56808 * 14 13 12 40 40 H 1.09006 * 113.61548 * 105.46713 * 14 13 12 41 41 H 1.09001 * 113.53489 * 270.81519 * 15 14 13 42 42 H 0.97000 * 120.00472 * 287.40369 * 16 15 14 43 43 H 0.96997 * 120.00068 * 179.97438 * 20 19 17 44 44 H 1.08989 * 113.61856 * 254.53730 * 25 13 12 45 45 H 1.09007 * 113.60536 * 25.43992 * 25 13 12 46 46 H 1.07997 * 120.03255 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2707 -3.6866 -0.0185 10 8 5.5334 -4.6495 -0.0236 11 7 7.6071 -3.8613 -0.0190 12 6 8.1691 -5.2142 -0.0249 13 6 9.6968 -5.1319 -0.0248 14 6 10.3063 -4.9911 -1.4296 15 6 11.4064 -5.9614 -0.9620 16 7 11.7999 -6.9407 -1.9779 17 6 13.0102 -6.8250 -2.6081 18 1 13.6744 -6.0114 -2.3565 19 6 13.3828 -7.7527 -3.5711 20 7 12.5731 -8.7439 -3.8782 21 14 15.0340 -7.5951 -4.4302 22 1 16.0631 -8.3452 -3.6662 23 1 14.9329 -8.1523 -5.8030 24 1 15.4187 -6.1627 -4.5044 25 6 10.3877 -6.5036 0.0544 26 6 2.1970 -1.1966 -0.0058 27 1 -0.3633 -0.0050 1.0277 28 1 -0.3634 0.8925 -0.5094 29 1 -0.3633 -0.8875 -0.5181 30 1 1.6565 2.1324 -0.0004 31 1 4.1176 2.1381 0.0098 32 1 5.3552 0.0102 0.0002 33 1 6.0278 -1.7576 -0.8990 34 1 6.0280 -1.7669 0.8810 35 1 8.1969 -3.0912 -0.0146 36 1 7.8337 -5.7509 0.8625 37 1 7.8342 -5.7427 -0.9175 38 1 10.0816 -4.4072 0.6928 39 1 9.6757 -5.3950 -2.2217 40 1 10.6719 -3.9878 -1.6484 41 1 12.2595 -5.4629 -0.5017 42 1 11.2032 -7.6713 -2.2042 43 1 12.8333 -9.3919 -4.5514 44 1 10.8187 -6.7196 1.0319 45 1 9.7793 -7.3217 -0.3312 46 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100975310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:46 Heat of formation + Delta-G solvation = -23.568156 kcal Electronic energy + Delta-G solvation = -24769.584893 eV Core-core repulsion = 21046.217270 eV Total energy + Delta-G solvation = -3723.367623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72896 -39.71128 -38.55234 -37.70272 -34.77469 -33.33957 -32.89154 -31.13505 -30.33991 -29.00340 -27.38734 -26.57014 -25.13024 -23.86342 -22.91609 -21.89377 -21.10264 -20.60406 -19.11940 -18.34508 -17.40857 -17.04778 -16.70767 -16.51321 -16.03185 -15.79712 -15.15630 -14.81170 -14.65988 -14.56364 -14.04818 -13.99671 -13.63379 -13.57647 -13.34189 -12.99736 -12.94309 -12.47683 -12.44966 -11.95372 -11.92492 -11.85956 -11.45324 -11.33852 -11.27479 -11.24173 -10.86525 -10.55433 -10.30163 -10.17026 -9.92094 -9.86407 -9.52822 -9.17106 -9.14505 -8.89321 -8.55484 -6.98812 -5.80380 -3.09531 0.93427 1.08432 2.29259 2.38974 3.37654 3.40735 3.41598 3.46211 3.48155 4.29678 4.41020 4.52077 4.56222 4.57251 4.66577 4.72190 4.86001 4.92311 4.94451 4.96513 5.11540 5.18000 5.21251 5.33011 5.43779 5.45551 5.51814 5.70495 5.76725 5.79512 5.88673 5.93159 6.04557 6.06027 6.17171 6.21256 6.26516 6.31313 6.36309 6.39721 6.55005 6.78340 6.99993 7.07497 7.30423 7.66775 8.01213 8.38081 9.49129 10.07282 10.41283 11.41902 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028545 B = 0.001678 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.685024 B =16679.900168 C =16916.626510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.048 4.048 3 C -0.161 4.161 4 C -0.076 4.076 5 C -0.218 4.218 6 C 0.135 3.865 7 O -0.289 6.289 8 C 0.041 3.959 9 C 0.512 3.488 10 O -0.518 6.518 11 N -0.720 5.720 12 C 0.133 3.867 13 C -0.127 4.127 14 C -0.162 4.162 15 C 0.166 3.834 16 N -0.713 5.713 17 C -0.246 4.246 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.142 4.142 26 C -0.151 4.151 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.401 0.599 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.863 21.477 11.223 31.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.048 4.048 3 C -0.179 4.179 4 C -0.094 4.094 5 C -0.236 4.236 6 C 0.089 3.911 7 O -0.201 6.201 8 C -0.038 4.038 9 C 0.296 3.704 10 O -0.393 6.393 11 N -0.374 5.374 12 C 0.011 3.989 13 C -0.146 4.146 14 C -0.203 4.203 15 C 0.054 3.946 16 N -0.350 5.350 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.182 4.182 26 C -0.169 4.169 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.235 0.765 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.278 20.553 11.116 30.939 hybrid contribution 1.260 0.425 -0.613 1.464 sum -19.018 20.978 10.503 30.201 Atomic orbital electron populations 1.20826 0.90639 1.03117 1.02661 1.19728 0.96147 0.92185 0.96706 1.20960 0.94194 0.97569 1.05189 1.20930 0.94189 0.97389 0.96869 1.21260 1.00302 0.92251 1.09815 1.19047 0.91881 0.84407 0.95763 1.86170 1.17857 1.27668 1.88412 1.22495 0.80732 0.96648 1.03877 1.19972 0.82843 0.90184 0.77424 1.90768 1.59016 1.41823 1.47714 1.45880 1.05724 1.10324 1.75437 1.21492 0.92979 0.82048 1.02412 1.22646 0.92086 1.00001 0.99916 1.23989 1.00711 1.01006 0.94590 1.21544 0.92893 0.90677 0.89525 1.42409 1.19764 1.29835 1.43018 1.19304 0.94374 1.08702 1.15329 0.91088 1.24776 0.98537 0.97618 0.99943 1.69663 1.36526 1.16154 1.35589 0.86186 0.83665 0.77382 0.78915 1.21669 1.21753 1.20753 1.23450 0.98883 0.95361 1.00494 1.20329 0.90815 0.98867 1.06900 0.90797 0.91238 0.91172 0.85919 0.85670 0.85404 0.88839 0.88966 0.76451 0.91523 0.90970 0.89310 0.90325 0.92745 0.90670 0.78046 0.93423 0.91924 0.90052 0.84995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.01 36.01 0.36 -0.26 16 2 C -0.05 -0.38 5.88 -104.64 -0.62 -0.99 16 3 C -0.16 -1.17 9.70 -39.56 -0.38 -1.55 16 4 C -0.08 -0.55 10.04 -39.61 -0.40 -0.95 16 5 C -0.22 -1.79 9.04 -39.44 -0.36 -2.14 16 6 C 0.13 1.39 6.69 -39.22 -0.26 1.13 16 7 O -0.29 -3.48 9.67 -39.36 -0.38 -3.86 16 8 C 0.04 0.37 5.22 36.00 0.19 0.56 16 9 C 0.51 6.28 7.91 -10.99 -0.09 6.19 16 10 O -0.52 -8.94 16.50 -14.35 -0.24 -9.18 16 11 N -0.72 -7.42 5.56 -60.30 -0.33 -7.76 16 12 C 0.13 1.67 5.50 -4.04 -0.02 1.64 16 13 C -0.13 -1.60 3.75 -89.81 -0.34 -1.93 16 14 C -0.16 -2.56 7.45 -25.83 -0.19 -2.75 16 15 C 0.17 3.12 4.48 -67.03 -0.30 2.82 16 16 N -0.71 -17.56 5.41 -52.55 -0.28 -17.84 16 17 C -0.25 -6.74 9.97 -15.06 -0.15 -6.89 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 21 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C -0.14 -2.19 7.40 -25.92 -0.19 -2.38 16 26 C -0.15 -1.46 9.64 -39.43 -0.38 -1.84 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 29 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 30 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 31 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 32 H 0.13 0.77 6.30 -52.48 -0.33 0.43 16 33 H 0.09 0.62 7.66 -51.93 -0.40 0.22 16 34 H 0.09 0.56 7.66 -51.92 -0.40 0.16 16 35 H 0.40 2.87 8.47 -40.82 -0.35 2.52 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.05 7.87 -51.93 -0.41 0.64 16 38 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 39 H 0.08 1.39 7.92 -51.93 -0.41 0.98 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 42 H 0.39 10.15 7.92 -40.82 -0.32 9.83 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.06 0.89 8.14 -51.94 -0.42 0.47 16 45 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 46 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 386.40 15.07 5.82 5.82 Total: -1.00 -34.32 386.40 -10.16 -44.48 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -7.22 Total: 8.30 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -3.22 Total: -9.80 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.11 Total: -52.90 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.62 Total: -13.04 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.32 -10.16 -44.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100975310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.909 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds