Wall clock time and date at job start Tue Mar 31 2020 13:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46966 * 2 1 4 4 C 1.38011 * 119.89259 * 264.98182 * 3 2 1 5 5 C 1.38251 * 119.95779 * 180.02562 * 4 3 2 6 6 C 1.38146 * 119.98502 * 359.90843 * 5 4 3 7 7 C 1.38461 * 120.31651 * 0.02562 * 6 5 4 8 8 C 1.38419 * 119.82888 * 0.13644 * 7 6 5 9 9 O 1.35861 * 121.81460 * 179.53003 * 8 7 6 10 10 C 1.42828 * 117.83204 * 17.24621 * 9 8 7 11 11 C 1.53409 * 108.40349 * 310.81320 * 10 9 8 12 12 C 1.50761 * 118.77004 * 180.18090 * 7 6 5 13 13 H 1.09005 * 109.43366 * 77.71142 * 12 7 6 14 14 N 1.46502 * 109.43955 * 317.84286 * 12 7 6 15 15 C 1.34767 * 120.00445 * 154.78352 * 14 12 7 16 16 O 1.21592 * 119.99906 * 359.97438 * 15 14 12 17 17 N 1.34774 * 120.00493 * 179.97438 * 15 14 12 18 18 C 1.46501 * 120.00591 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47099 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.46963 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99819 * 359.97438 * 20 19 18 22 22 C 1.37873 * 120.00079 * 180.02562 * 20 19 18 23 23 N 1.31518 * 120.00111 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00060 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46995 * 59.99951 * 24 22 20 26 26 H 1.48499 * 109.47041 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47176 * 300.00001 * 24 22 20 28 28 H 1.08995 * 109.46986 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46883 * 299.99534 * 1 2 3 30 30 H 1.08994 * 109.47225 * 60.00039 * 1 2 3 31 31 H 1.09001 * 109.46883 * 240.00465 * 2 1 3 32 32 H 1.08994 * 109.47225 * 119.99961 * 2 1 3 33 33 H 1.08001 * 120.02667 * 359.97438 * 4 3 2 34 34 H 1.08007 * 120.00421 * 179.89008 * 5 4 3 35 35 H 1.08000 * 119.84364 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.68392 * 191.07278 * 10 9 8 37 37 H 1.08999 * 109.68538 * 70.55326 * 10 9 8 38 38 H 1.08997 * 109.69462 * 184.41251 * 11 10 9 39 39 H 1.08997 * 109.69813 * 304.95972 * 11 10 9 40 40 H 0.97000 * 119.99050 * 334.77414 * 14 12 7 41 41 H 0.97000 * 119.99708 * 359.97438 * 17 15 14 42 42 H 1.08996 * 109.46970 * 300.00528 * 18 17 15 43 43 H 1.08996 * 109.46652 * 60.00387 * 18 17 15 44 44 H 1.08997 * 109.47445 * 300.00634 * 19 18 17 45 45 H 1.08996 * 109.46935 * 60.00705 * 19 18 17 46 46 H 0.96993 * 119.99933 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3603 2.0344 -1.1919 5 6 2.8217 3.3376 -1.1934 6 6 2.9524 4.0252 -0.0024 7 6 2.6236 3.4153 1.1964 8 6 2.1646 2.1094 1.2014 9 8 1.8395 1.4689 2.3546 10 6 1.6196 2.2646 3.5201 11 6 2.7934 3.2410 3.6686 12 6 2.7757 4.1993 2.4751 13 1 1.9396 4.8911 2.5779 14 7 4.0305 4.9546 2.4376 15 6 4.1639 6.0766 3.1722 16 8 3.2426 6.4623 3.8657 17 7 5.3184 6.7711 3.1381 18 6 5.4633 7.9911 3.9362 19 6 6.8585 8.5801 3.7186 20 6 7.0077 9.8348 4.5400 21 1 6.1891 10.1779 5.1553 22 6 8.1888 10.5452 4.5052 23 7 9.1851 10.1282 3.7548 24 14 8.3735 12.1007 5.5228 25 1 8.1923 11.7761 6.9605 26 1 9.7273 12.6731 5.3108 27 1 7.3476 13.0899 5.1056 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.2573 1.4967 -2.1229 34 1 3.0803 3.8180 -2.1256 35 1 3.3127 5.0433 -0.0063 36 1 1.5636 1.6215 4.3984 37 1 0.6892 2.8224 3.4137 38 1 2.6867 3.8056 4.5948 39 1 3.7323 2.6875 3.6820 40 1 4.7653 4.6469 1.8842 41 1 6.0535 6.4631 2.5852 42 1 4.7101 8.7170 3.6300 43 1 5.3304 7.7528 4.9914 44 1 7.6114 7.8540 4.0250 45 1 6.9918 8.8184 2.6634 46 1 10.0162 10.6277 3.7306 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273091663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:39 Heat of formation + Delta-G solvation = -64.026317 kcal Electronic energy + Delta-G solvation = -26157.405202 eV Core-core repulsion = 22432.283181 eV Total energy + Delta-G solvation = -3725.122020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.22257 -39.49600 -37.88636 -36.18079 -34.73999 -33.81991 -32.89006 -31.70603 -30.79386 -29.34227 -29.30096 -25.62939 -24.55492 -23.99667 -23.91755 -21.23543 -20.96839 -20.55890 -20.24348 -18.29055 -17.91897 -16.94407 -16.43149 -15.99213 -15.94572 -15.35503 -14.99748 -14.61512 -14.53854 -14.50496 -14.15500 -13.95020 -13.78118 -13.51648 -13.29808 -13.22194 -12.88100 -12.54514 -12.37678 -12.27565 -11.85011 -11.57264 -11.41912 -11.20360 -11.18905 -11.03177 -10.97900 -10.68185 -10.64762 -10.32152 -10.00119 -9.57578 -9.29835 -9.22999 -8.84773 -8.49625 -8.35018 -8.25345 -6.09327 -4.12133 1.00262 1.17094 2.90972 3.08619 3.31253 3.35034 3.38571 3.49498 3.54305 4.25481 4.37789 4.43240 4.51085 4.56676 4.67400 4.81112 4.91646 4.95130 5.03526 5.12938 5.17908 5.20064 5.27635 5.30648 5.37645 5.43921 5.62760 5.68246 5.72232 5.82513 5.89055 6.00053 6.13982 6.21743 6.27843 6.31480 6.38390 6.54071 6.55593 6.76299 6.97320 7.18231 7.21358 7.55849 7.62612 7.89539 8.24867 8.40124 8.91220 8.96473 9.52541 11.02261 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029574 B = 0.002220 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.560257 B =12610.295554 C =13222.730276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C -0.116 4.116 4 C -0.083 4.083 5 C -0.151 4.151 6 C -0.076 4.076 7 C -0.171 4.171 8 C 0.148 3.852 9 O -0.313 6.313 10 C 0.065 3.935 11 C -0.172 4.172 12 C 0.214 3.786 13 H 0.099 0.901 14 N -0.745 5.745 15 C 0.700 3.300 16 O -0.597 6.597 17 N -0.737 5.737 18 C 0.140 3.860 19 C 0.013 3.987 20 C -0.521 4.521 21 H 0.059 0.941 22 C 0.058 3.942 23 N -0.895 5.895 24 Si 0.898 3.102 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.396 0.604 41 H 0.393 0.607 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.022 0.978 45 H 0.022 0.978 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.009 -21.734 -9.559 28.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.116 4.116 4 C -0.101 4.101 5 C -0.169 4.169 6 C -0.094 4.094 7 C -0.173 4.173 8 C 0.102 3.898 9 O -0.227 6.227 10 C -0.011 4.011 11 C -0.211 4.211 12 C 0.108 3.892 13 H 0.117 0.883 14 N -0.400 5.400 15 C 0.400 3.600 16 O -0.476 6.476 17 N -0.390 5.390 18 C 0.018 3.982 19 C -0.024 4.024 20 C -0.560 4.560 21 H 0.077 0.923 22 C -0.143 4.143 23 N -0.533 5.533 24 Si 0.725 3.275 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.201 1.201 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.128 0.872 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.230 0.770 41 H 0.226 0.774 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.040 0.960 45 H 0.040 0.960 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.687 -21.468 -8.893 28.037 hybrid contribution 1.051 0.931 0.062 1.405 sum -14.636 -20.537 -8.831 26.720 Atomic orbital electron populations 1.21704 0.94897 1.01476 1.02034 1.20346 0.96079 0.92031 1.02718 1.19401 1.04329 0.97522 0.90394 1.20882 0.97612 0.94866 0.96759 1.21031 1.02745 0.95013 0.98099 1.20946 0.97507 0.99834 0.91149 1.19934 1.06921 0.94484 0.95956 1.18454 0.95415 0.90098 0.85838 1.85976 1.84404 1.35910 1.16374 1.22999 0.97723 0.93974 0.86359 1.22689 0.99624 0.98268 1.00522 1.19314 0.87935 0.91639 0.90285 0.88294 1.45197 1.16830 1.26992 1.51029 1.16055 0.83766 0.79744 0.80478 1.90885 1.40298 1.70867 1.45569 1.45546 1.14295 1.28664 1.50542 1.21600 1.00664 0.82493 0.93487 1.19320 0.89294 0.95974 0.97846 1.21008 0.99564 1.08487 1.26947 0.92273 1.24999 0.95791 0.97962 0.95577 1.69945 1.04323 1.39731 1.39330 0.86561 0.77149 0.83083 0.80673 1.20109 1.21263 1.20110 0.92588 0.92478 0.92868 0.91336 0.90622 0.85529 0.85722 0.85491 0.87150 0.91473 0.88825 0.90189 0.77005 0.77350 0.92756 0.92776 0.95984 0.95977 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.90 37.16 0.37 -0.65 16 2 C -0.07 -0.58 5.74 -27.88 -0.16 -0.74 16 3 C -0.12 -1.10 5.15 -104.38 -0.54 -1.64 16 4 C -0.08 -0.71 9.67 -39.66 -0.38 -1.09 16 5 C -0.15 -1.35 10.04 -39.61 -0.40 -1.75 16 6 C -0.08 -0.78 9.03 -39.53 -0.36 -1.14 16 7 C -0.17 -1.88 5.47 -104.44 -0.57 -2.45 16 8 C 0.15 1.58 6.46 -39.19 -0.25 1.33 16 9 O -0.31 -3.23 9.29 -19.30 -0.18 -3.40 16 10 C 0.06 0.57 7.02 37.37 0.26 0.83 16 11 C -0.17 -1.83 5.76 -26.48 -0.15 -1.99 16 12 C 0.21 2.56 2.59 -69.02 -0.18 2.38 16 13 H 0.10 1.35 7.57 -51.93 -0.39 0.96 16 14 N -0.74 -9.56 4.43 -59.75 -0.26 -9.82 16 15 C 0.70 11.99 8.53 -86.93 -0.74 11.25 16 16 O -0.60 -12.45 16.00 5.28 0.08 -12.37 16 17 N -0.74 -12.92 5.56 -65.23 -0.36 -13.28 16 18 C 0.14 3.00 5.61 -4.04 -0.02 2.98 16 19 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 20 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 21 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 24 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.44 8.05 -51.93 -0.42 0.02 16 32 H 0.08 0.63 7.61 -51.93 -0.40 0.23 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 35 H 0.13 1.29 7.69 -52.49 -0.40 0.88 16 36 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.40 4.27 8.31 -40.82 -0.34 3.93 16 41 H 0.39 5.96 8.49 -40.82 -0.35 5.61 16 42 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 379.48 15.07 5.72 5.72 Total: -1.00 -32.19 379.48 -10.30 -42.48 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.33 Total: 5.40 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -3.68 Total: -5.72 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.11 Total: -48.49 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.09 Total: -15.77 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.19 -10.30 -42.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273091663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.542 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds