Wall clock time and date at job start Tue Mar 31 2020 13:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46966 * 2 1 4 4 C 1.38011 * 119.89259 * 264.98182 * 3 2 1 5 5 C 1.38251 * 119.95779 * 180.02562 * 4 3 2 6 6 C 1.38146 * 119.98502 * 359.90843 * 5 4 3 7 7 C 1.38461 * 120.31651 * 0.02562 * 6 5 4 8 8 C 1.38419 * 119.82888 * 0.13644 * 7 6 5 9 9 O 1.35861 * 121.81460 * 179.53003 * 8 7 6 10 10 C 1.42828 * 117.83204 * 17.24621 * 9 8 7 11 11 C 1.53409 * 108.40349 * 310.81320 * 10 9 8 12 12 C 1.50761 * 118.77004 * 180.18090 * 7 6 5 13 13 H 1.09005 * 109.43366 * 77.71142 * 12 7 6 14 14 N 1.46502 * 109.43955 * 317.84286 * 12 7 6 15 15 C 1.34767 * 120.00445 * 154.78352 * 14 12 7 16 16 O 1.21592 * 119.99906 * 359.97438 * 15 14 12 17 17 N 1.34774 * 120.00493 * 179.97438 * 15 14 12 18 18 C 1.46501 * 120.00591 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47099 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.46963 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99819 * 359.97438 * 20 19 18 22 22 C 1.37873 * 120.00079 * 180.02562 * 20 19 18 23 23 N 1.31518 * 120.00111 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00060 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46995 * 59.99951 * 24 22 20 26 26 H 1.48499 * 109.47041 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47176 * 300.00001 * 24 22 20 28 28 H 1.08995 * 109.46986 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46883 * 299.99534 * 1 2 3 30 30 H 1.08994 * 109.47225 * 60.00039 * 1 2 3 31 31 H 1.09001 * 109.46883 * 240.00465 * 2 1 3 32 32 H 1.08994 * 109.47225 * 119.99961 * 2 1 3 33 33 H 1.08001 * 120.02667 * 359.97438 * 4 3 2 34 34 H 1.08007 * 120.00421 * 179.89008 * 5 4 3 35 35 H 1.08000 * 119.84364 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.68392 * 191.07278 * 10 9 8 37 37 H 1.08999 * 109.68538 * 70.55326 * 10 9 8 38 38 H 1.08997 * 109.69462 * 184.41251 * 11 10 9 39 39 H 1.08997 * 109.69813 * 304.95972 * 11 10 9 40 40 H 0.97000 * 119.99050 * 334.77414 * 14 12 7 41 41 H 0.97000 * 119.99708 * 359.97438 * 17 15 14 42 42 H 1.08996 * 109.46970 * 300.00528 * 18 17 15 43 43 H 1.08996 * 109.46652 * 60.00387 * 18 17 15 44 44 H 1.08997 * 109.47445 * 300.00634 * 19 18 17 45 45 H 1.08996 * 109.46935 * 60.00705 * 19 18 17 46 46 H 0.96993 * 119.99933 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3603 2.0344 -1.1919 5 6 2.8217 3.3376 -1.1934 6 6 2.9524 4.0252 -0.0024 7 6 2.6236 3.4153 1.1964 8 6 2.1646 2.1094 1.2014 9 8 1.8395 1.4689 2.3546 10 6 1.6196 2.2646 3.5201 11 6 2.7934 3.2410 3.6686 12 6 2.7757 4.1993 2.4751 13 1 1.9396 4.8911 2.5779 14 7 4.0305 4.9546 2.4376 15 6 4.1639 6.0766 3.1722 16 8 3.2426 6.4623 3.8657 17 7 5.3184 6.7711 3.1381 18 6 5.4633 7.9911 3.9362 19 6 6.8585 8.5801 3.7186 20 6 7.0077 9.8348 4.5400 21 1 6.1891 10.1779 5.1553 22 6 8.1888 10.5452 4.5052 23 7 9.1851 10.1282 3.7548 24 14 8.3735 12.1007 5.5228 25 1 8.1923 11.7761 6.9605 26 1 9.7273 12.6731 5.3108 27 1 7.3476 13.0899 5.1056 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.2573 1.4967 -2.1229 34 1 3.0803 3.8180 -2.1256 35 1 3.3127 5.0433 -0.0063 36 1 1.5636 1.6215 4.3984 37 1 0.6892 2.8224 3.4137 38 1 2.6867 3.8056 4.5948 39 1 3.7323 2.6875 3.6820 40 1 4.7653 4.6469 1.8842 41 1 6.0535 6.4631 2.5852 42 1 4.7101 8.7170 3.6300 43 1 5.3304 7.7528 4.9914 44 1 7.6114 7.8540 4.0250 45 1 6.9918 8.8184 2.6634 46 1 10.0162 10.6277 3.7306 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273091663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:38 Heat of formation + Delta-G solvation = -83.617589 kcal Electronic energy + Delta-G solvation = -26158.254743 eV Core-core repulsion = 22432.283181 eV Total energy + Delta-G solvation = -3725.971562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.07515 -40.81851 -38.61512 -37.31034 -36.36088 -34.87347 -34.58811 -32.84542 -31.65123 -30.99943 -30.02122 -27.04404 -25.86660 -24.91260 -24.63114 -22.96376 -22.06147 -21.67962 -21.13502 -19.57924 -18.77349 -18.44254 -17.73852 -17.23206 -16.85329 -16.56924 -16.42513 -16.05450 -15.58953 -15.38631 -15.20626 -15.11697 -15.01042 -14.44569 -14.34380 -14.24215 -14.19249 -13.77150 -13.24791 -13.22215 -13.08489 -12.93644 -12.55399 -12.53404 -12.38287 -12.20265 -12.13831 -11.91255 -11.69929 -11.63711 -11.55795 -11.43880 -11.20511 -10.60434 -10.44477 -9.88727 -9.60164 -9.08532 -8.23900 -6.34261 0.24141 0.42490 1.41856 1.44368 1.52057 1.69928 2.10975 2.31712 2.41303 2.74971 3.10802 3.29685 3.41483 3.64761 3.72629 3.92871 4.04308 4.09222 4.31463 4.33535 4.40699 4.46797 4.51393 4.51909 4.53135 4.60335 4.65506 4.74510 4.85520 4.87661 4.97505 5.02313 5.12915 5.18235 5.29736 5.34020 5.43833 5.45973 5.49719 5.54664 5.59111 5.60816 5.78080 5.84369 5.99469 6.16834 6.42744 6.78732 7.06588 7.34902 7.54490 8.87744 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029574 B = 0.002220 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.560257 B =12610.295554 C =13222.730276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.073 4.073 3 C -0.123 4.123 4 C -0.080 4.080 5 C -0.151 4.151 6 C -0.088 4.088 7 C -0.182 4.182 8 C 0.134 3.866 9 O -0.318 6.318 10 C 0.067 3.933 11 C -0.167 4.167 12 C 0.214 3.786 13 H 0.079 0.921 14 N -0.725 5.725 15 C 0.702 3.298 16 O -0.634 6.634 17 N -0.732 5.732 18 C 0.161 3.839 19 C 0.024 3.976 20 C -0.547 4.547 21 H 0.059 0.941 22 C 0.006 3.994 23 N -0.926 5.926 24 Si 0.965 3.035 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.268 1.268 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.123 0.877 36 H 0.135 0.865 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.408 0.592 41 H 0.406 0.594 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.008 0.992 45 H 0.008 0.992 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.478 -22.810 -10.434 29.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C -0.123 4.123 4 C -0.098 4.098 5 C -0.169 4.169 6 C -0.106 4.106 7 C -0.184 4.184 8 C 0.088 3.912 9 O -0.232 6.232 10 C -0.008 4.008 11 C -0.206 4.206 12 C 0.109 3.891 13 H 0.097 0.903 14 N -0.380 5.380 15 C 0.402 3.598 16 O -0.516 6.516 17 N -0.387 5.387 18 C 0.037 3.963 19 C -0.013 4.013 20 C -0.585 4.585 21 H 0.078 0.922 22 C -0.193 4.193 23 N -0.566 5.566 24 Si 0.790 3.210 25 H -0.193 1.193 26 H -0.206 1.206 27 H -0.193 1.193 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.172 0.828 34 H 0.162 0.838 35 H 0.141 0.859 36 H 0.153 0.847 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.245 0.755 41 H 0.242 0.758 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.026 0.974 45 H 0.027 0.973 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.152 -22.594 -9.803 29.453 hybrid contribution 1.169 1.192 0.256 1.689 sum -14.983 -21.403 -9.547 27.816 Atomic orbital electron populations 1.21679 0.94439 1.02200 1.01508 1.20383 0.96401 0.90999 1.03247 1.19725 1.03975 0.98372 0.90260 1.21226 0.96290 0.94732 0.97515 1.21300 1.01999 0.95271 0.98303 1.21022 0.98120 0.99890 0.91600 1.19828 1.08316 0.94794 0.95449 1.18663 0.95924 0.90106 0.86507 1.85972 1.84458 1.36155 1.16568 1.23110 0.96804 0.94012 0.86859 1.22606 1.00611 0.98191 0.99155 1.19349 0.86441 0.91450 0.91875 0.90343 1.45019 1.17707 1.25508 1.49796 1.16084 0.82894 0.80377 0.80458 1.90861 1.41446 1.72031 1.47270 1.45230 1.15161 1.27802 1.50483 1.21079 0.98230 0.83585 0.93402 1.19123 0.90711 0.95055 0.96455 1.21433 0.99887 1.09719 1.27468 0.92241 1.25880 0.95415 1.01286 0.96680 1.70052 1.04819 1.41144 1.40564 0.85492 0.77370 0.78994 0.79162 1.19332 1.20618 1.19341 0.91265 0.93841 0.92531 0.89530 0.91361 0.82835 0.83755 0.85878 0.84695 0.91120 0.90140 0.90255 0.75528 0.75843 0.93753 0.93755 0.97364 0.97322 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.90 71.98 0.71 -1.02 16 2 C -0.07 -0.98 5.74 29.85 0.17 -0.81 16 3 C -0.12 -2.11 5.15 -19.71 -0.10 -2.21 16 4 C -0.08 -1.16 9.67 22.22 0.21 -0.95 16 5 C -0.15 -2.40 10.04 22.25 0.22 -2.18 16 6 C -0.09 -1.73 9.03 22.30 0.20 -1.53 16 7 C -0.18 -3.92 5.47 -19.75 -0.11 -4.03 16 8 C 0.13 2.75 6.46 22.52 0.15 2.89 16 9 O -0.32 -6.26 9.29 -91.98 -0.85 -7.12 16 10 C 0.07 1.13 7.02 72.12 0.51 1.64 16 11 C -0.17 -3.55 5.76 30.76 0.18 -3.38 16 12 C 0.21 5.18 2.59 44.29 0.11 5.29 16 13 H 0.08 2.23 7.57 -2.38 -0.02 2.21 16 14 N -0.72 -18.64 4.43 -461.20 -2.04 -20.68 16 15 C 0.70 24.33 8.53 179.06 1.53 25.86 16 16 O -0.63 -27.02 16.00 -4.01 -0.06 -27.08 16 17 N -0.73 -25.87 5.56 -478.55 -2.66 -28.53 16 18 C 0.16 7.03 5.61 86.38 0.48 7.51 16 19 C 0.02 1.22 5.09 29.85 0.15 1.37 16 20 C -0.55 -30.63 9.11 25.60 0.23 -30.40 16 21 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 22 C 0.01 0.35 5.46 84.65 0.46 0.81 16 23 N -0.93 -54.38 13.29 21.45 0.28 -54.10 16 24 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 0.85 8.05 -2.39 -0.02 0.83 16 32 H 0.07 1.03 7.61 -2.39 -0.02 1.01 16 33 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.12 2.45 7.69 -2.91 -0.02 2.43 16 36 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.41 8.60 8.31 -92.71 -0.77 7.83 16 41 H 0.41 12.26 8.49 -92.71 -0.79 11.48 16 42 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -68.99 379.48 1.24 -67.75 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -0.57 Total: 25.17 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 5.12 Total: -1.13 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -4.42 Total: -103.31 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -0.92 Total: -34.20 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -68.99 1.24 -67.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273091663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.867 kcal (2) G-P(sol) polarization free energy of solvation -68.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds