Wall clock time and date at job start Tue Mar 31 2020 12:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35132 * 126.44141 * 2 1 4 4 O 1.33933 * 108.76712 * 180.02562 * 3 2 1 5 5 C 1.34921 * 109.38285 * 0.02562 * 4 3 2 6 6 C 1.46657 * 125.98566 * 179.97438 * 5 4 3 7 7 O 1.21694 * 119.99834 * 180.02562 * 6 5 4 8 8 N 1.34774 * 120.00107 * 0.02562 * 6 5 4 9 9 C 1.47351 * 125.77813 * 0.02562 * 8 6 5 10 10 C 1.54456 * 107.33615 * 178.98484 * 9 8 6 11 11 C 1.54368 * 102.87381 * 338.50358 * 10 9 8 12 12 C 1.47572 * 125.62831 * 180.02562 * 8 6 5 13 13 C 1.52100 * 110.56776 * 152.60157 * 11 10 9 14 14 C 1.53343 * 109.44289 * 182.79867 * 13 11 10 15 15 N 1.46924 * 108.68897 * 306.70376 * 14 13 11 16 16 C 1.36947 * 120.55329 * 234.32044 * 15 14 13 17 17 H 1.08000 * 119.99601 * 27.99426 * 16 15 14 18 18 C 1.38808 * 119.99971 * 207.98786 * 16 15 14 19 19 N 1.31619 * 120.00038 * 17.46466 * 18 16 15 20 20 Si 1.86804 * 119.99663 * 197.45865 * 18 16 15 21 21 H 1.48497 * 109.47085 * 60.00492 * 20 18 16 22 22 H 1.48507 * 109.46880 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47534 * 300.00035 * 20 18 16 24 24 C 1.46940 * 118.89880 * 54.34070 * 15 14 13 25 25 C 1.52103 * 110.55141 * 276.69669 * 11 10 9 26 26 C 1.36539 * 108.02409 * 0.22652 * 5 4 3 27 27 H 1.08997 * 109.47243 * 89.97307 * 1 2 3 28 28 H 1.09002 * 109.47456 * 209.97548 * 1 2 3 29 29 H 1.09006 * 109.47030 * 329.97479 * 1 2 3 30 30 H 1.07994 * 125.61678 * 0.02643 * 3 2 1 31 31 H 1.08995 * 109.85339 * 59.54707 * 9 8 6 32 32 H 1.09008 * 109.98799 * 298.49297 * 9 8 6 33 33 H 1.09001 * 110.73397 * 220.15792 * 10 9 8 34 34 H 1.09001 * 110.89191 * 96.92320 * 10 9 8 35 35 H 1.08995 * 110.37685 * 84.47609 * 12 8 6 36 36 H 1.08998 * 110.37569 * 322.23357 * 12 8 6 37 37 H 1.09006 * 109.47970 * 302.78856 * 13 11 10 38 38 H 1.09004 * 109.47818 * 62.80571 * 13 11 10 39 39 H 1.09004 * 109.59985 * 186.94515 * 14 13 11 40 40 H 1.08998 * 109.60266 * 66.46390 * 14 13 11 41 41 H 0.97003 * 119.99833 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.60219 * 185.89457 * 24 15 14 43 43 H 1.09002 * 109.73134 * 65.49246 * 24 15 14 44 44 H 1.09003 * 109.47963 * 297.17718 * 25 11 10 45 45 H 1.09003 * 109.47931 * 57.18752 * 25 11 10 46 46 H 1.08002 * 126.64741 * 179.77552 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5858 0.6805 -0.0006 5 6 3.6260 -0.6681 -0.0015 6 6 4.8378 -1.4941 -0.0029 7 8 4.7470 -2.7077 -0.0041 8 7 6.0520 -0.9092 -0.0028 9 6 6.3093 0.5417 -0.0008 10 6 7.8412 0.7374 0.0246 11 6 8.3504 -0.6070 0.5869 12 6 7.3471 -1.6167 -0.0046 13 6 9.7583 -0.8956 0.0890 14 6 10.2113 -2.2666 0.6051 15 7 10.0425 -2.2996 2.0643 16 6 11.0941 -2.6235 2.8796 17 1 12.1062 -2.4213 2.5614 18 6 10.8592 -3.2115 4.1148 19 7 9.6940 -3.7690 4.3673 20 14 12.1969 -3.2117 5.4186 21 1 12.5637 -1.8118 5.7517 22 1 11.6992 -3.8970 6.6384 23 1 13.3915 -3.9269 4.9023 24 6 8.7265 -1.9798 2.6343 25 6 8.2823 -0.6104 2.1065 26 6 2.3408 -1.1291 -0.0067 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5143 30 1 1.9770 2.1145 0.0004 31 1 5.8629 0.9956 0.8838 32 1 5.8927 0.9952 -0.9003 33 1 8.1142 1.5602 0.6854 34 1 8.2282 0.9068 -0.9802 35 1 7.6323 -1.8835 -1.0222 36 1 7.2932 -2.5084 0.6199 37 1 9.7652 -0.8973 -1.0011 38 1 10.4383 -0.1265 0.4555 39 1 11.2606 -2.4232 0.3548 40 1 9.6036 -3.0481 0.1490 41 1 9.5299 -4.1802 5.2304 42 1 8.7970 -1.9473 3.7216 43 1 8.0025 -2.7386 2.3373 44 1 8.9415 0.1627 2.5016 45 1 7.2587 -0.4127 2.4248 46 1 2.0266 -2.1624 -0.0121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040814921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:06 Heat of formation + Delta-G solvation = 2.104967 kcal Electronic energy + Delta-G solvation = -27546.506464 eV Core-core repulsion = 23824.252111 eV Total energy + Delta-G solvation = -3722.254353 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.84623 -40.23411 -38.31086 -35.88863 -34.42528 -33.09618 -31.21319 -30.58404 -29.99512 -29.31286 -27.78762 -26.54763 -24.89458 -23.25265 -22.28171 -22.19570 -21.19148 -20.66907 -19.29497 -18.18073 -17.48001 -16.67276 -16.63652 -16.36394 -15.75258 -15.24919 -14.85896 -14.14896 -13.94709 -13.79129 -13.65933 -13.43971 -13.29993 -13.26727 -13.19288 -12.90548 -12.83602 -12.61680 -12.32619 -11.94044 -11.89528 -11.65625 -11.31327 -11.15701 -10.86561 -10.68947 -10.44598 -10.27144 -10.16097 -10.12267 -9.88132 -9.80609 -9.50888 -9.37962 -8.83538 -8.47691 -8.41368 -6.62663 -5.74955 -3.17617 0.98264 2.13237 2.55561 3.10113 3.20861 3.40290 3.46323 3.47172 4.34395 4.52305 4.56465 4.69830 4.71886 4.82946 5.02718 5.11917 5.32690 5.35316 5.39014 5.41681 5.45626 5.53308 5.60132 5.68703 5.72242 5.76018 5.79735 5.91843 5.99729 6.06043 6.09080 6.20912 6.25091 6.29087 6.32702 6.48989 6.63222 6.67105 6.73449 6.76754 6.87582 6.99688 7.38869 7.52022 7.70872 7.82470 8.09619 8.48662 9.24590 9.88436 10.44998 11.33132 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021467 B = 0.003165 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.029796 B = 8843.356604 C = 9379.676233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.194 4.194 3 C -0.018 4.018 4 O -0.158 6.158 5 C -0.062 4.062 6 C 0.611 3.389 7 O -0.519 6.519 8 N -0.604 5.604 9 C 0.106 3.894 10 C -0.126 4.126 11 C -0.056 4.056 12 C 0.115 3.885 13 C -0.117 4.117 14 C 0.143 3.857 15 N -0.591 5.591 16 C -0.254 4.254 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.171 3.829 25 C -0.125 4.125 26 C -0.124 4.124 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.207 0.793 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.254 0.746 42 H 0.087 0.913 43 H 0.020 0.980 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.392 13.142 -10.830 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.195 4.195 3 C -0.088 4.088 4 O -0.053 6.053 5 C -0.114 4.114 6 C 0.398 3.602 7 O -0.397 6.397 8 N -0.337 5.337 9 C -0.017 4.017 10 C -0.164 4.164 11 C -0.057 4.057 12 C -0.006 4.006 13 C -0.156 4.156 14 C 0.016 3.984 15 N -0.313 5.313 16 C -0.383 4.383 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.731 3.269 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.045 3.955 25 C -0.164 4.164 26 C -0.145 4.145 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.223 0.777 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.269 12.525 -10.669 21.779 hybrid contribution 0.363 0.063 0.733 0.820 sum -13.906 12.588 -9.936 21.227 Atomic orbital electron populations 1.20173 0.88719 1.02846 1.02213 1.20473 0.97639 0.92442 1.08959 1.24175 0.80270 0.99942 1.04393 1.84159 1.28937 1.21798 1.70404 1.22096 0.96053 0.80436 1.12795 1.16154 0.80273 0.86008 0.77727 1.90908 1.85361 1.12029 1.51405 1.48476 1.05565 1.08265 1.71350 1.22133 0.97200 0.80645 1.01704 1.22734 0.92965 0.98865 1.01821 1.21017 0.94889 0.92650 0.97132 1.22465 0.80247 0.96898 1.01018 1.21858 0.94363 1.00928 0.98489 1.20954 0.98564 0.92640 0.86211 1.44035 1.08536 1.79365 0.99387 1.19133 0.87271 1.33722 0.98198 0.91757 1.25044 0.96973 0.97642 0.99982 1.70033 1.23166 1.38467 1.22839 0.86389 0.81438 0.77637 0.81405 1.21101 1.21688 1.20914 1.20820 0.85628 0.89396 0.99666 1.22007 0.99658 1.02287 0.92462 1.21829 0.90514 1.00588 1.01551 0.91357 0.91261 0.91517 0.77651 0.91215 0.91512 0.89992 0.90781 0.91564 0.88907 0.92841 0.91704 0.92696 0.96351 0.93583 0.89446 0.96238 0.92273 0.93420 0.82329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.39 36.00 0.37 -0.18 16 2 C -0.19 -1.90 6.14 -104.93 -0.64 -2.54 16 3 C -0.02 -0.16 12.00 29.63 0.36 0.19 16 4 O -0.16 -1.87 8.30 4.97 0.04 -1.83 16 5 C -0.06 -0.87 6.95 -36.80 -0.26 -1.13 16 6 C 0.61 10.40 7.82 -12.86 -0.10 10.30 16 7 O -0.52 -10.54 17.13 5.19 0.09 -10.46 16 8 N -0.60 -9.51 3.33 -172.08 -0.57 -10.08 16 9 C 0.11 1.33 5.20 -2.81 -0.01 1.31 16 10 C -0.13 -1.55 5.89 -25.25 -0.15 -1.70 16 11 C -0.06 -0.89 0.54 -154.11 -0.08 -0.97 16 12 C 0.11 1.94 4.87 -2.85 -0.01 1.93 16 13 C -0.12 -1.90 4.83 -27.01 -0.13 -2.03 16 14 C 0.14 2.93 6.25 -3.63 -0.02 2.90 16 15 N -0.59 -14.66 2.98 -172.12 -0.51 -15.17 16 16 C -0.25 -6.94 9.57 -15.06 -0.14 -7.09 16 17 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 18 C 0.00 0.06 4.90 -17.43 -0.09 -0.02 16 19 N -0.90 -26.53 11.20 55.49 0.62 -25.91 16 20 Si 0.90 21.81 29.59 -169.99 -5.03 16.79 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.17 4.09 5.01 -3.63 -0.02 4.07 16 25 C -0.12 -2.35 4.83 -27.01 -0.13 -2.48 16 26 C -0.12 -1.56 10.57 -39.39 -0.42 -1.98 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.21 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.07 0.86 7.69 -51.93 -0.40 0.46 16 32 H 0.07 0.74 7.79 -51.92 -0.40 0.33 16 33 H 0.08 0.93 8.01 -51.93 -0.42 0.52 16 34 H 0.07 0.80 7.99 -51.93 -0.42 0.39 16 35 H 0.07 1.05 7.97 -51.93 -0.41 0.64 16 36 H 0.09 1.90 6.10 -51.93 -0.32 1.58 16 37 H 0.05 0.74 8.09 -51.93 -0.42 0.32 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 40 H 0.02 0.39 7.63 -51.93 -0.40 -0.01 16 41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.09 2.37 6.02 -51.93 -0.31 2.06 16 43 H 0.02 0.51 6.58 -51.93 -0.34 0.17 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.87 7.84 -51.93 -0.41 0.46 16 46 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -32.39 362.30 -8.55 -40.94 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.16 Total: -0.32 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.48 Total: 0.58 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: -0.46 Total: -51.16 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.13 Total: -12.28 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.39 -8.55 -40.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040814921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.040 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds