Wall clock time and date at job start Tue Mar 31 2020 12:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40361 * 126.44222 * 2 1 4 4 C 1.36548 * 106.70789 * 180.02562 * 3 2 1 5 5 C 1.46658 * 125.98889 * 179.97438 * 4 3 2 6 6 O 1.21687 * 120.00091 * 352.80552 * 5 4 3 7 7 N 1.34776 * 119.99797 * 172.80576 * 5 4 3 8 8 C 1.47151 * 121.21835 * 352.76442 * 7 5 4 9 9 C 1.52838 * 107.97639 * 237.28240 * 8 7 5 10 10 C 1.53097 * 110.57725 * 302.65094 * 9 8 7 11 11 H 1.08996 * 112.49322 * 289.44730 * 10 9 8 12 12 C 1.56031 * 107.06789 * 164.90756 * 10 9 8 13 13 C 1.54519 * 102.70505 * 281.16608 * 12 10 9 14 14 N 1.47435 * 107.14018 * 337.54201 * 13 12 10 15 15 C 1.36935 * 126.06384 * 178.23046 * 14 13 12 16 16 H 1.07993 * 120.00066 * 179.69075 * 15 14 13 17 17 C 1.38812 * 119.99703 * 359.68595 * 15 14 13 18 18 N 1.31624 * 119.99982 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00116 * 180.27697 * 17 15 14 20 20 H 1.48499 * 109.47171 * 179.72826 * 19 17 15 21 21 H 1.48500 * 109.46982 * 299.72677 * 19 17 15 22 22 H 1.48493 * 109.47014 * 59.72515 * 19 17 15 23 23 C 1.46473 * 107.87979 * 357.96499 * 14 13 12 24 24 H 1.08997 * 108.42132 * 270.37675 * 23 14 13 25 25 C 1.44084 * 121.21784 * 173.36325 * 7 5 4 26 26 O 1.34916 * 108.02167 * 0.24415 * 4 3 2 27 27 C 1.33927 * 109.38554 * 359.59439 * 26 4 3 28 28 C 1.50702 * 125.61711 * 180.12464 * 27 26 4 29 29 H 1.08997 * 109.47396 * 90.02083 * 1 2 3 30 30 H 1.09000 * 109.47579 * 210.02172 * 1 2 3 31 31 H 1.08997 * 109.47364 * 330.02245 * 1 2 3 32 32 H 1.07998 * 126.65162 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.76620 * 117.66063 * 8 7 5 34 34 H 1.09003 * 109.76026 * 356.89530 * 8 7 5 35 35 H 1.09001 * 109.25870 * 182.36599 * 9 8 7 36 36 H 1.09005 * 109.26023 * 62.93280 * 9 8 7 37 37 H 1.08994 * 110.78281 * 39.67342 * 12 10 9 38 38 H 1.08997 * 110.78021 * 162.92021 * 12 10 9 39 39 H 1.08994 * 110.02813 * 218.09100 * 13 12 10 40 40 H 1.09004 * 109.78657 * 96.84961 * 13 12 10 41 41 H 0.96997 * 119.99766 * 179.97438 * 18 17 15 42 42 H 1.09004 * 108.85741 * 6.58829 * 25 7 5 43 43 H 1.08997 * 108.07343 * 248.10906 * 25 7 5 44 44 H 1.09001 * 109.47157 * 270.33329 * 28 27 26 45 45 H 1.09005 * 109.47047 * 30.32802 * 28 27 26 46 46 H 1.08997 * 109.47415 * 150.32947 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3407 1.1291 0.0000 4 6 3.6260 0.6681 -0.0006 5 6 4.8379 1.4940 -0.0013 6 8 4.7518 2.7006 -0.1335 7 7 6.0469 0.9167 0.1443 8 6 6.1754 -0.5143 0.4626 9 6 6.9816 -0.6395 1.7551 10 6 8.3475 0.0354 1.6048 11 1 9.0129 -0.5137 0.9387 12 6 8.9337 0.2074 3.0405 13 6 8.1784 1.4472 3.5697 14 7 7.7076 2.2034 2.3949 15 6 6.9640 3.3530 2.4212 16 1 6.6754 3.8306 1.4966 17 6 6.5812 3.9042 3.6362 18 7 6.9334 3.3223 4.7631 19 14 5.5603 5.4682 3.6721 20 1 5.2801 5.8443 5.0811 21 1 6.3100 6.5640 3.0070 22 1 4.2793 5.2396 2.9566 23 6 8.1816 1.5105 1.1946 24 1 9.1623 1.9074 0.9324 25 6 7.2608 1.6806 0.0066 26 8 3.5857 -0.6805 -0.0064 27 6 2.3096 -1.0871 -0.0006 28 6 1.8454 -2.5208 -0.0016 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5135 32 1 2.0266 2.1625 0.0004 33 1 6.6951 -1.0267 -0.3469 34 1 5.1865 -0.9512 0.6014 35 1 7.1256 -1.6945 1.9882 36 1 6.4332 -0.1639 2.5683 37 1 8.7209 -0.6689 3.6527 38 1 10.0062 0.3977 3.0001 39 1 8.8489 2.0666 4.1654 40 1 7.3274 1.1311 4.1730 41 1 6.6662 3.7077 5.6121 42 1 7.0036 2.7345 -0.1001 43 1 7.7721 1.3435 -0.8950 44 1 1.7336 -2.8658 -1.0295 45 1 2.5801 -3.1410 0.5120 46 1 0.8867 -2.5927 0.5121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042017708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:19 Heat of formation + Delta-G solvation = 15.459121 kcal Electronic energy + Delta-G solvation = -28536.499917 eV Core-core repulsion = 24814.824644 eV Total energy + Delta-G solvation = -3721.675273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.69103 -39.88338 -37.95634 -35.24049 -34.32839 -32.81551 -32.01856 -31.13827 -29.39029 -28.66964 -28.40139 -26.40502 -24.61221 -23.89177 -22.54742 -21.74554 -20.78360 -19.98088 -19.51428 -18.38595 -17.04099 -16.60759 -16.43582 -15.82549 -15.36228 -14.82344 -14.55446 -14.21719 -13.93595 -13.89444 -13.65196 -13.36181 -13.25999 -13.07661 -12.94593 -12.79232 -12.63632 -12.44901 -12.28810 -11.94200 -11.59396 -11.54871 -11.35522 -11.10028 -10.87844 -10.75256 -10.60707 -10.07740 -9.91143 -9.81432 -9.65707 -9.61597 -9.50473 -9.42199 -8.47434 -8.37725 -8.05669 -6.71626 -5.58577 -2.90456 1.25576 2.37500 2.70864 3.38039 3.53194 3.55475 3.61858 3.67525 4.56489 4.63566 4.78038 4.79471 5.07411 5.10810 5.20198 5.21838 5.35320 5.39636 5.46829 5.54937 5.55414 5.61075 5.66298 5.74377 5.78344 5.81053 5.86238 5.96829 6.01005 6.04106 6.16074 6.26112 6.30744 6.36125 6.46497 6.52542 6.53800 6.65835 6.76111 6.96899 7.00514 7.17695 7.66827 7.69270 7.80938 7.96386 8.35822 8.53595 9.34963 9.95770 10.59881 11.53846 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012287 B = 0.005453 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.350735 B = 5133.500353 C = 6409.578938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.190 4.190 3 C -0.123 4.123 4 C -0.058 4.058 5 C 0.603 3.397 6 O -0.510 6.510 7 N -0.580 5.580 8 C 0.099 3.901 9 C -0.121 4.121 10 C -0.102 4.102 11 H 0.075 0.925 12 C -0.143 4.143 13 C 0.179 3.821 14 N -0.589 5.589 15 C -0.213 4.213 16 H 0.082 0.918 17 C -0.008 4.008 18 N -0.927 5.927 19 Si 0.906 3.094 20 H -0.293 1.293 21 H -0.286 1.286 22 H -0.284 1.284 23 C 0.154 3.846 24 H 0.030 0.970 25 C 0.110 3.890 26 O -0.155 6.155 27 C -0.004 4.004 28 C -0.074 4.074 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.157 0.843 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.041 0.959 40 H 0.045 0.955 41 H 0.249 0.751 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.905 -14.686 -10.135 19.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.191 4.191 3 C -0.144 4.144 4 C -0.109 4.109 5 C 0.390 3.610 6 O -0.387 6.387 7 N -0.311 5.311 8 C -0.023 4.023 9 C -0.159 4.159 10 C -0.122 4.122 11 H 0.093 0.907 12 C -0.181 4.181 13 C 0.054 3.946 14 N -0.314 5.314 15 C -0.341 4.341 16 H 0.100 0.900 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.736 3.264 20 H -0.219 1.219 21 H -0.213 1.213 22 H -0.210 1.210 23 C 0.046 3.954 24 H 0.047 0.953 25 C -0.014 4.014 26 O -0.052 6.052 27 C -0.055 4.055 28 C -0.130 4.130 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.175 0.825 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.776 -14.043 -10.032 18.541 hybrid contribution -0.562 0.931 0.300 1.128 sum -7.337 -13.112 -9.733 17.902 Atomic orbital electron populations 1.20169 0.88950 1.02637 1.01940 1.20145 0.97237 0.91874 1.09887 1.21782 0.90636 1.00383 1.01550 1.22188 0.96415 0.79892 1.12433 1.16525 0.80878 0.86016 0.77609 1.90872 1.84968 1.12336 1.50524 1.47011 1.05390 1.10058 1.68622 1.22079 1.01859 0.81038 0.97317 1.21803 0.96373 0.99788 0.97956 1.22380 0.95769 0.96535 0.97512 0.90679 1.23153 0.99364 1.00096 0.95533 1.21216 0.96068 0.88301 0.89011 1.44296 1.61748 1.26238 0.99164 1.19015 1.24105 0.98089 0.92878 0.90020 1.24699 1.01055 0.99244 0.95371 1.69953 1.50690 1.40497 0.96418 0.86268 0.80700 0.83270 0.76120 1.21911 1.21268 1.21009 1.20714 0.94943 0.91059 0.88718 0.95316 1.20993 0.84633 0.98464 0.97265 1.84177 1.27679 1.22128 1.71223 1.22611 0.81575 0.96979 1.04381 1.20341 1.01846 0.87355 1.03476 0.91520 0.91679 0.91379 0.82504 0.91706 0.88480 0.91944 0.90215 0.92334 0.92714 0.94115 0.93718 0.94050 0.88526 0.92829 0.89973 0.90333 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.16 36.00 0.37 -0.39 16 2 C -0.19 -2.50 6.14 -104.93 -0.64 -3.14 16 3 C -0.12 -2.00 10.58 -39.39 -0.42 -2.42 16 4 C -0.06 -1.03 6.80 -36.79 -0.25 -1.28 16 5 C 0.60 12.43 7.65 -12.86 -0.10 12.33 16 6 O -0.51 -12.22 16.28 5.20 0.08 -12.14 16 7 N -0.58 -10.92 2.93 -177.76 -0.52 -11.44 16 8 C 0.10 1.53 6.19 -3.77 -0.02 1.51 16 9 C -0.12 -1.98 5.08 -26.76 -0.14 -2.12 16 10 C -0.10 -1.73 3.63 -88.43 -0.32 -2.05 16 11 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 12 C -0.14 -2.64 6.34 -24.31 -0.15 -2.79 16 13 C 0.18 4.35 4.64 -2.73 -0.01 4.33 16 14 N -0.59 -14.94 3.20 -164.41 -0.53 -15.47 16 15 C -0.21 -6.09 9.70 -15.06 -0.15 -6.24 16 16 H 0.08 2.39 6.52 -52.49 -0.34 2.04 16 17 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 18 N -0.93 -28.10 10.38 55.49 0.58 -27.52 16 19 Si 0.91 23.92 29.55 -169.99 -5.02 18.90 16 20 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.28 -7.63 7.11 56.52 0.40 -7.22 16 23 C 0.15 3.15 3.02 -68.30 -0.21 2.94 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 25 C 0.11 2.13 5.53 -6.20 -0.03 2.09 16 26 O -0.15 -2.32 7.26 5.00 0.04 -2.29 16 27 C 0.00 -0.05 7.31 -35.41 -0.26 -0.31 16 28 C -0.07 -0.56 10.21 36.01 0.37 -0.19 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.49 7.13 -51.93 -0.37 0.12 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.16 2.53 8.06 -52.49 -0.42 2.10 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.47 4.19 -53.10 -0.22 1.24 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.63 6.98 -51.93 -0.36 1.27 16 37 H 0.06 0.98 7.99 -51.93 -0.41 0.56 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.04 1.11 7.58 -51.93 -0.39 0.71 16 40 H 0.04 1.22 7.10 -51.93 -0.37 0.85 16 41 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.10 2.15 5.44 -51.93 -0.28 1.87 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 0.53 7.13 -51.93 -0.37 0.16 16 LS Contribution 357.25 15.07 5.38 5.38 Total: -1.00 -34.05 357.25 -8.97 -43.02 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.91 Total: -0.37 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.06 Total: 1.93 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.47 Total: -54.44 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.12 Total: -14.43 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.02 Total: 18.90 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.05 -8.97 -43.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042017708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.480 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds