Wall clock time and date at job start Tue Mar 31 2020 12:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40361 * 126.44222 * 2 1 4 4 C 1.36548 * 106.70789 * 180.02562 * 3 2 1 5 5 C 1.46658 * 125.98889 * 179.97438 * 4 3 2 6 6 O 1.21687 * 120.00091 * 352.80552 * 5 4 3 7 7 N 1.34776 * 119.99797 * 172.80576 * 5 4 3 8 8 C 1.47151 * 121.21835 * 352.76442 * 7 5 4 9 9 C 1.52838 * 107.97639 * 237.28240 * 8 7 5 10 10 C 1.53097 * 110.57725 * 302.65094 * 9 8 7 11 11 H 1.08996 * 112.49322 * 289.44730 * 10 9 8 12 12 C 1.56031 * 107.06789 * 164.90756 * 10 9 8 13 13 C 1.54519 * 102.70505 * 281.16608 * 12 10 9 14 14 N 1.47435 * 107.14018 * 337.54201 * 13 12 10 15 15 C 1.36935 * 126.06384 * 178.23046 * 14 13 12 16 16 H 1.07993 * 120.00066 * 179.69075 * 15 14 13 17 17 C 1.38812 * 119.99703 * 359.68595 * 15 14 13 18 18 N 1.31624 * 119.99982 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00116 * 180.27697 * 17 15 14 20 20 H 1.48499 * 109.47171 * 179.72826 * 19 17 15 21 21 H 1.48500 * 109.46982 * 299.72677 * 19 17 15 22 22 H 1.48493 * 109.47014 * 59.72515 * 19 17 15 23 23 C 1.46473 * 107.87979 * 357.96499 * 14 13 12 24 24 H 1.08997 * 108.42132 * 270.37675 * 23 14 13 25 25 C 1.44084 * 121.21784 * 173.36325 * 7 5 4 26 26 O 1.34916 * 108.02167 * 0.24415 * 4 3 2 27 27 C 1.33927 * 109.38554 * 359.59439 * 26 4 3 28 28 C 1.50702 * 125.61711 * 180.12464 * 27 26 4 29 29 H 1.08997 * 109.47396 * 90.02083 * 1 2 3 30 30 H 1.09000 * 109.47579 * 210.02172 * 1 2 3 31 31 H 1.08997 * 109.47364 * 330.02245 * 1 2 3 32 32 H 1.07998 * 126.65162 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.76620 * 117.66063 * 8 7 5 34 34 H 1.09003 * 109.76026 * 356.89530 * 8 7 5 35 35 H 1.09001 * 109.25870 * 182.36599 * 9 8 7 36 36 H 1.09005 * 109.26023 * 62.93280 * 9 8 7 37 37 H 1.08994 * 110.78281 * 39.67342 * 12 10 9 38 38 H 1.08997 * 110.78021 * 162.92021 * 12 10 9 39 39 H 1.08994 * 110.02813 * 218.09100 * 13 12 10 40 40 H 1.09004 * 109.78657 * 96.84961 * 13 12 10 41 41 H 0.96997 * 119.99766 * 179.97438 * 18 17 15 42 42 H 1.09004 * 108.85741 * 6.58829 * 25 7 5 43 43 H 1.08997 * 108.07343 * 248.10906 * 25 7 5 44 44 H 1.09001 * 109.47157 * 270.33329 * 28 27 26 45 45 H 1.09005 * 109.47047 * 30.32802 * 28 27 26 46 46 H 1.08997 * 109.47415 * 150.32947 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3407 1.1291 0.0000 4 6 3.6260 0.6681 -0.0006 5 6 4.8379 1.4940 -0.0013 6 8 4.7518 2.7006 -0.1335 7 7 6.0469 0.9167 0.1443 8 6 6.1754 -0.5143 0.4626 9 6 6.9816 -0.6395 1.7551 10 6 8.3475 0.0354 1.6048 11 1 9.0129 -0.5137 0.9387 12 6 8.9337 0.2074 3.0405 13 6 8.1784 1.4472 3.5697 14 7 7.7076 2.2034 2.3949 15 6 6.9640 3.3530 2.4212 16 1 6.6754 3.8306 1.4966 17 6 6.5812 3.9042 3.6362 18 7 6.9334 3.3223 4.7631 19 14 5.5603 5.4682 3.6721 20 1 5.2801 5.8443 5.0811 21 1 6.3100 6.5640 3.0070 22 1 4.2793 5.2396 2.9566 23 6 8.1816 1.5105 1.1946 24 1 9.1623 1.9074 0.9324 25 6 7.2608 1.6806 0.0066 26 8 3.5857 -0.6805 -0.0064 27 6 2.3096 -1.0871 -0.0006 28 6 1.8454 -2.5208 -0.0016 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5135 32 1 2.0266 2.1625 0.0004 33 1 6.6951 -1.0267 -0.3469 34 1 5.1865 -0.9512 0.6014 35 1 7.1256 -1.6945 1.9882 36 1 6.4332 -0.1639 2.5683 37 1 8.7209 -0.6689 3.6527 38 1 10.0062 0.3977 3.0001 39 1 8.8489 2.0666 4.1654 40 1 7.3274 1.1311 4.1730 41 1 6.6662 3.7077 5.6121 42 1 7.0036 2.7345 -0.1001 43 1 7.7721 1.3435 -0.8950 44 1 1.7336 -2.8658 -1.0295 45 1 2.5801 -3.1410 0.5120 46 1 0.8867 -2.5927 0.5121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042017708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:18 Heat of formation + Delta-G solvation = -6.391702 kcal Electronic energy + Delta-G solvation = -28537.447440 eV Core-core repulsion = 24814.824644 eV Total energy + Delta-G solvation = -3722.622796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.82792 -41.39836 -39.58083 -36.82045 -35.41546 -34.69816 -33.14715 -32.78294 -30.96023 -30.16664 -29.55188 -27.56489 -26.53651 -25.37202 -24.00650 -23.00687 -22.03630 -21.74568 -20.86492 -19.86440 -18.56268 -18.34806 -17.64221 -17.29918 -16.90250 -16.42671 -16.14535 -15.94454 -15.55594 -15.30263 -14.74899 -14.67926 -14.46766 -14.29277 -14.02115 -13.87209 -13.82846 -13.69724 -13.57277 -13.22178 -13.07878 -13.02738 -12.86408 -12.67742 -12.56493 -12.42771 -12.36312 -12.08639 -11.71004 -11.46758 -11.37421 -11.23382 -11.02050 -10.73123 -10.68432 -9.71146 -9.28699 -8.82156 -7.85246 -5.15233 0.00561 1.28399 1.33119 1.37229 1.44399 1.52307 1.99047 2.27109 2.46505 3.32854 3.39455 3.58319 3.76087 3.82637 3.85203 3.95049 4.07783 4.23434 4.24367 4.41670 4.44895 4.47552 4.54322 4.62366 4.70078 4.70949 4.73587 4.77506 4.84787 4.88126 4.92446 4.96290 5.05538 5.09717 5.10554 5.14423 5.17415 5.27226 5.51950 5.56807 5.60202 5.69889 5.70813 5.80571 5.90507 6.22176 6.37089 7.03257 7.14111 7.82003 8.44731 9.25378 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012287 B = 0.005453 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.350735 B = 5133.500353 C = 6409.578938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.204 4.204 3 C -0.133 4.133 4 C -0.094 4.094 5 C 0.591 3.409 6 O -0.566 6.566 7 N -0.582 5.582 8 C 0.098 3.902 9 C -0.116 4.116 10 C -0.085 4.085 11 H 0.127 0.873 12 C -0.128 4.128 13 C 0.186 3.814 14 N -0.607 5.607 15 C -0.204 4.204 16 H 0.068 0.932 17 C -0.066 4.066 18 N -0.950 5.950 19 Si 0.955 3.045 20 H -0.288 1.288 21 H -0.278 1.278 22 H -0.295 1.295 23 C 0.141 3.859 24 H 0.035 0.965 25 C 0.112 3.888 26 O -0.154 6.154 27 C 0.013 3.987 28 C -0.074 4.074 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.144 0.856 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.028 0.972 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.000 1.000 40 H 0.004 0.996 41 H 0.242 0.758 42 H 0.055 0.945 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.090 0.910 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.123 -18.926 -11.859 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.205 4.205 3 C -0.154 4.154 4 C -0.146 4.146 5 C 0.380 3.620 6 O -0.448 6.448 7 N -0.311 5.311 8 C -0.022 4.022 9 C -0.154 4.154 10 C -0.104 4.104 11 H 0.145 0.855 12 C -0.166 4.166 13 C 0.061 3.939 14 N -0.332 5.332 15 C -0.334 4.334 16 H 0.085 0.915 17 C -0.258 4.258 18 N -0.601 5.601 19 Si 0.785 3.215 20 H -0.213 1.213 21 H -0.204 1.204 22 H -0.223 1.223 23 C 0.034 3.966 24 H 0.053 0.947 25 C -0.012 4.012 26 O -0.051 6.051 27 C -0.039 4.039 28 C -0.130 4.130 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.162 0.838 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.046 0.954 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.018 0.982 40 H 0.022 0.978 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.114 0.886 44 H 0.125 0.875 45 H 0.109 0.891 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.960 -18.331 -11.782 22.875 hybrid contribution -0.549 2.165 0.767 2.362 sum -7.509 -16.166 -11.014 20.953 Atomic orbital electron populations 1.20276 0.86201 1.03706 1.03275 1.20550 0.99107 0.90689 1.10182 1.22012 0.91341 1.01087 1.00960 1.21650 0.95509 0.81147 1.16261 1.16987 0.82205 0.85861 0.76959 1.90818 1.85987 1.14669 1.53285 1.47208 1.04647 1.11537 1.67755 1.22350 1.02675 0.79050 0.98155 1.21773 0.95387 1.01626 0.96651 1.22444 0.96906 0.94152 0.96894 0.85528 1.23013 0.99410 0.97517 0.96668 1.20977 0.94351 0.90156 0.88449 1.44498 1.61178 1.25876 1.01682 1.19087 1.23159 0.99048 0.92093 0.91465 1.25324 1.02973 1.02004 0.95488 1.70141 1.52122 1.41497 0.96336 0.85486 0.78958 0.81044 0.76004 1.21346 1.20424 1.22287 1.21057 0.94876 0.93371 0.87311 0.94712 1.20922 0.85059 0.96745 0.98450 1.84131 1.29234 1.20421 1.71320 1.23674 0.80310 0.99128 1.00739 1.20670 1.03032 0.83755 1.05519 0.89980 0.89012 0.91942 0.83827 0.87559 0.88108 0.87686 0.95355 0.90004 0.90961 0.98187 0.97762 0.94826 0.92624 0.88569 0.87528 0.89091 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.16 71.23 0.72 -0.55 16 2 C -0.20 -5.07 6.14 -20.07 -0.12 -5.20 16 3 C -0.13 -4.50 10.58 22.39 0.24 -4.26 16 4 C -0.09 -3.44 6.80 24.07 0.16 -3.27 16 5 C 0.59 25.50 7.65 86.44 0.66 26.16 16 6 O -0.57 -29.29 16.28 -4.31 -0.07 -29.36 16 7 N -0.58 -21.80 2.93 -834.53 -2.44 -24.25 16 8 C 0.10 2.75 6.19 86.20 0.53 3.28 16 9 C -0.12 -3.45 5.08 30.57 0.16 -3.30 16 10 C -0.08 -2.56 3.63 -9.37 -0.03 -2.59 16 11 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 12 C -0.13 -4.42 6.34 32.16 0.20 -4.22 16 13 C 0.19 9.33 4.64 86.72 0.40 9.73 16 14 N -0.61 -31.87 3.20 -674.07 -2.16 -34.03 16 15 C -0.20 -12.34 9.70 84.03 0.82 -11.52 16 16 H 0.07 4.21 6.52 -2.91 -0.02 4.19 16 17 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 18 N -0.95 -60.79 10.38 21.65 0.22 -60.57 16 19 Si 0.95 51.81 29.55 68.60 2.03 53.83 16 20 H -0.29 -15.21 7.11 99.48 0.71 -14.50 16 21 H -0.28 -14.55 7.11 99.48 0.71 -13.84 16 22 H -0.30 -16.44 7.11 99.48 0.71 -15.74 16 23 C 0.14 5.62 3.02 44.77 0.14 5.75 16 24 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 25 C 0.11 4.30 5.53 86.26 0.48 4.78 16 26 O -0.15 -4.38 7.26 -5.03 -0.04 -4.42 16 27 C 0.01 0.29 7.31 24.97 0.18 0.47 16 28 C -0.07 -0.77 10.21 71.24 0.73 -0.04 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.01 7.13 -2.39 -0.02 0.99 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.14 5.06 8.06 -2.91 -0.02 5.03 16 33 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.10 2.80 4.19 -20.91 -0.09 2.71 16 35 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.03 1.14 6.98 -2.38 -0.02 1.12 16 37 H 0.08 2.48 7.99 -2.39 -0.02 2.46 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.00 -0.01 7.58 -2.39 -0.02 -0.02 16 40 H 0.00 0.24 7.10 -2.39 -0.02 0.22 16 41 H 0.24 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.06 2.60 5.44 -2.39 -0.01 2.59 16 43 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 44 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.11 0.72 7.13 -2.39 -0.02 0.70 16 Total: -1.00 -83.85 357.25 4.18 -79.67 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.91 Total: 7.53 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 5.73 Total: 11.60 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -4.38 Total: -118.85 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.11 Total: -33.78 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 2.03 Total: 53.83 kcal Total: -83.85 4.18 -79.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042017708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.279 kcal (2) G-P(sol) polarization free energy of solvation -83.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds