Wall clock time and date at job start Tue Mar 31 2020 12:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40364 * 126.64720 * 2 1 4 4 C 1.35132 * 107.11651 * 179.97438 * 3 2 1 5 5 O 1.33929 * 108.76684 * 359.73749 * 4 3 2 6 6 C 1.34907 * 109.38596 * 0.43560 * 5 4 3 7 7 C 1.46651 * 125.99064 * 179.82821 * 6 5 4 8 8 O 1.21703 * 120.00169 * 179.69280 * 7 6 5 9 9 N 1.34773 * 119.99951 * 359.96633 * 7 6 5 10 10 C 1.46505 * 120.00095 * 179.72488 * 9 7 6 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.53347 * 111.22937 * 297.62799 * 11 10 9 13 13 C 1.55539 * 105.84148 * 241.97510 * 12 11 10 14 14 C 1.54689 * 104.34615 * 334.35564 * 13 12 11 15 15 C 1.54576 * 111.31352 * 177.45035 * 11 10 9 16 16 H 1.08992 * 111.92668 * 18.71574 * 15 11 10 17 17 N 1.46894 * 107.36792 * 255.61864 * 15 11 10 18 18 C 1.36932 * 125.24586 * 181.66116 * 17 15 11 19 19 H 1.08007 * 120.00638 * 359.97269 * 18 17 15 20 20 C 1.38822 * 120.00068 * 179.97438 * 18 17 15 21 21 N 1.31620 * 119.99368 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 120.00353 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47270 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47367 * 119.99750 * 22 20 18 25 25 H 1.48504 * 109.47154 * 240.00061 * 22 20 18 26 26 C 1.46733 * 109.49821 * 1.66221 * 17 15 11 27 27 C 1.53865 * 111.25662 * 61.01810 * 11 10 9 28 28 H 1.09001 * 109.47174 * 270.02151 * 1 2 3 29 29 H 1.08993 * 109.47352 * 30.02241 * 1 2 3 30 30 H 1.08999 * 109.47157 * 150.02611 * 1 2 3 31 31 H 1.08006 * 126.44048 * 359.96007 * 3 2 1 32 32 H 1.08004 * 125.61614 * 179.97438 * 4 3 2 33 33 H 0.97000 * 120.00112 * 359.72923 * 9 7 6 34 34 H 1.09003 * 109.47169 * 299.99748 * 10 9 7 35 35 H 1.08993 * 109.47199 * 60.00009 * 10 9 7 36 36 H 1.09006 * 110.05805 * 1.98185 * 12 11 10 37 37 H 1.08998 * 110.05939 * 123.47552 * 12 11 10 38 38 H 1.08999 * 110.54309 * 215.54971 * 13 12 11 39 39 H 1.09001 * 110.23487 * 93.01558 * 13 12 11 40 40 H 1.08997 * 110.61304 * 278.65072 * 14 13 12 41 41 H 1.09003 * 110.74256 * 155.72317 * 14 13 12 42 42 H 0.96996 * 119.99965 * 180.02562 * 21 20 18 43 43 H 1.09006 * 110.03978 * 221.96487 * 26 17 15 44 44 H 1.08998 * 110.08471 * 100.53720 * 26 17 15 45 45 H 1.09007 * 110.56814 * 212.51482 * 27 11 10 46 46 H 1.09004 * 110.57199 * 335.38538 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3447 1.1262 0.0000 4 6 3.6183 0.6744 0.0006 5 8 3.6005 -0.6647 0.0067 6 6 2.3220 -1.0956 0.0005 7 6 1.8843 -2.4952 0.0007 8 8 0.6967 -2.7614 0.0004 9 7 2.7971 -3.4868 0.0069 10 6 2.3598 -4.8850 0.0131 11 6 3.5844 -5.8023 0.0200 12 6 4.4285 -5.6111 -1.2459 13 6 4.4150 -6.9841 -1.9766 14 6 4.1662 -8.0151 -0.8506 15 6 3.1715 -7.2902 0.0908 16 1 2.1322 -7.4385 -0.2021 17 7 3.4236 -7.7504 1.4629 18 6 3.2164 -9.0245 1.9196 19 1 2.8376 -9.7832 1.2506 20 6 3.4930 -9.3412 3.2426 21 7 3.9549 -8.4168 4.0577 22 14 3.2097 -11.0791 3.8659 23 1 2.6892 -11.9229 2.7603 24 1 4.4919 -11.6435 4.3585 25 1 2.2221 -11.0525 4.9747 26 6 3.9316 -6.6340 2.2683 27 6 4.4452 -5.5743 1.2748 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5141 30 1 -0.3633 -0.8902 -0.5134 31 1 2.0305 2.1595 -0.0006 32 1 4.5046 1.2916 0.0003 33 1 3.7436 -3.2746 0.0072 34 1 1.7597 -5.0741 0.9033 35 1 1.7622 -5.0828 -0.8766 36 1 3.9932 -4.8315 -1.8713 37 1 5.4513 -5.3474 -0.9769 38 1 5.3746 -7.1700 -2.4591 39 1 3.6069 -7.0143 -2.7074 40 1 5.0944 -8.2424 -0.3264 41 1 3.7206 -8.9252 -1.2521 42 1 4.1486 -8.6380 4.9820 43 1 4.7473 -6.9745 2.9062 44 1 3.1301 -6.2172 2.8781 45 1 5.4994 -5.7380 1.0510 46 1 4.2878 -4.5707 1.6700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094359708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:14 Heat of formation + Delta-G solvation = -3.723815 kcal Electronic energy + Delta-G solvation = -27397.053704 eV Core-core repulsion = 23674.546596 eV Total energy + Delta-G solvation = -3722.507108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.86287 -39.97325 -38.77942 -35.02569 -34.21735 -33.83276 -31.76015 -30.82939 -30.17344 -28.31351 -27.25574 -26.67887 -24.59616 -23.83759 -22.75383 -21.42510 -20.26928 -20.04839 -19.77443 -18.61221 -17.85100 -16.88734 -16.55165 -16.19198 -15.62670 -15.10433 -14.94260 -14.74647 -14.18856 -14.00921 -13.56042 -13.47943 -13.22320 -13.17577 -13.09714 -12.84838 -12.69061 -12.51116 -11.94460 -11.83655 -11.50929 -11.27676 -11.12586 -10.80935 -10.74141 -10.65342 -10.26453 -10.23843 -10.06589 -9.90744 -9.85728 -9.84336 -9.58101 -9.46674 -9.06148 -8.67036 -8.58304 -6.80041 -5.64273 -3.03140 0.93992 2.15300 2.57150 3.15832 3.26648 3.41173 3.47091 3.49219 4.49975 4.51332 4.58934 4.76387 4.93490 4.99206 5.03476 5.27401 5.34240 5.51143 5.52621 5.56656 5.59886 5.60778 5.76105 5.84274 5.85036 5.88249 5.96288 6.03501 6.07765 6.09493 6.17836 6.23239 6.31788 6.37819 6.43863 6.47457 6.58328 6.70113 6.70814 6.77125 6.86709 7.13102 7.52257 7.57624 7.70202 7.88693 8.12712 8.37145 9.26266 9.87351 10.50691 11.41368 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018841 B = 0.003212 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.739834 B = 8714.804170 C = 9244.705160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.091 4.091 3 C -0.226 4.226 4 C -0.007 4.007 5 O -0.163 6.163 6 C -0.080 4.080 7 C 0.599 3.401 8 O -0.520 6.520 9 N -0.710 5.710 10 C 0.140 3.860 11 C -0.082 4.082 12 C -0.112 4.112 13 C -0.122 4.122 14 C -0.130 4.130 15 C 0.173 3.827 16 H 0.048 0.952 17 N -0.596 5.596 18 C -0.219 4.219 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.163 3.837 27 C -0.134 4.134 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.155 0.845 32 H 0.209 0.791 33 H 0.404 0.596 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.250 0.750 43 H 0.093 0.907 44 H 0.012 0.988 45 H 0.061 0.939 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.960 17.719 -10.924 20.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.245 4.245 4 C -0.077 4.077 5 O -0.058 6.058 6 C -0.132 4.132 7 C 0.384 3.616 8 O -0.399 6.399 9 N -0.360 5.360 10 C 0.017 3.983 11 C -0.083 4.083 12 C -0.149 4.149 13 C -0.160 4.160 14 C -0.170 4.170 15 C 0.065 3.935 16 H 0.065 0.935 17 N -0.320 5.320 18 C -0.347 4.347 19 H 0.095 0.905 20 C -0.207 4.207 21 N -0.570 5.570 22 Si 0.742 3.258 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.038 3.962 27 C -0.172 4.172 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.172 0.828 32 H 0.226 0.774 33 H 0.240 0.760 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.111 0.889 44 H 0.030 0.970 45 H 0.080 0.920 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.366 17.147 -10.696 20.213 hybrid contribution 0.350 -0.433 0.466 0.726 sum 0.715 16.714 -10.230 19.609 Atomic orbital electron populations 1.20422 0.88233 1.03510 1.02967 1.20647 0.97706 0.90995 1.00091 1.21737 0.92488 1.00102 1.10182 1.24339 0.99920 0.80691 1.02769 1.84069 1.28433 1.22653 1.70658 1.21995 0.81402 0.95010 1.14814 1.16523 0.85873 0.81759 0.77403 1.90854 1.15709 1.82300 1.51022 1.45985 1.09841 1.06618 1.73597 1.21444 0.96493 0.77786 1.02582 1.21879 0.94369 0.96032 0.96038 1.22384 0.99412 0.97477 0.95667 1.22520 1.00485 0.95087 0.97904 1.22991 1.01052 0.97103 0.95851 1.21520 0.95804 0.88885 0.87270 0.93463 1.44341 1.75771 1.07212 1.04653 1.19083 1.36451 0.85233 0.93960 0.90472 1.24781 1.01805 0.97862 0.96222 1.69896 1.50877 1.31208 1.05043 0.86044 0.77297 0.83843 0.78598 1.20555 1.21869 1.21850 1.21433 0.98560 0.84955 0.91263 1.22807 0.98486 1.00032 0.95905 0.90779 0.91635 0.89403 0.82779 0.77430 0.76045 0.90532 0.91297 0.92242 0.91753 0.92506 0.92384 0.90973 0.92699 0.93913 0.88928 0.96956 0.92016 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 9.82 36.00 0.35 -0.67 16 2 C -0.09 -1.09 6.20 -104.43 -0.65 -1.73 16 3 C -0.23 -2.05 10.83 -39.89 -0.43 -2.48 16 4 C -0.01 -0.06 12.08 29.63 0.36 0.30 16 5 O -0.16 -1.85 10.40 5.02 0.05 -1.79 16 6 C -0.08 -1.06 7.13 -36.80 -0.26 -1.32 16 7 C 0.60 9.10 7.79 -12.87 -0.10 9.00 16 8 O -0.52 -9.25 14.74 5.19 0.08 -9.17 16 9 N -0.71 -10.03 4.64 -61.62 -0.29 -10.32 16 10 C 0.14 2.23 4.43 -4.04 -0.02 2.22 16 11 C -0.08 -1.35 0.53 -153.05 -0.08 -1.43 16 12 C -0.11 -1.53 5.75 -25.20 -0.14 -1.67 16 13 C -0.12 -1.72 6.88 -24.49 -0.17 -1.89 16 14 C -0.13 -2.32 6.23 -24.81 -0.15 -2.48 16 15 C 0.17 3.44 3.60 -65.86 -0.24 3.20 16 16 H 0.05 0.97 7.92 -51.93 -0.41 0.55 16 17 N -0.60 -14.66 2.99 -162.42 -0.49 -15.14 16 18 C -0.22 -5.96 9.96 -15.06 -0.15 -6.11 16 19 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 20 C -0.01 -0.31 5.48 -17.43 -0.10 -0.41 16 21 N -0.92 -26.77 10.14 55.49 0.56 -26.21 16 22 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 C 0.16 3.88 5.65 -3.36 -0.02 3.86 16 27 C -0.13 -2.42 5.77 -25.72 -0.15 -2.56 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 1.11 6.44 -51.93 -0.33 0.77 16 31 H 0.15 0.99 8.06 -52.48 -0.42 0.56 16 32 H 0.21 0.80 8.06 -52.48 -0.42 0.38 16 33 H 0.40 5.05 7.31 -40.82 -0.30 4.75 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.74 7.51 -51.93 -0.39 0.35 16 37 H 0.06 0.84 7.28 -51.93 -0.38 0.47 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.44 8.06 -51.93 -0.42 1.02 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.09 2.50 6.16 -51.93 -0.32 2.18 16 44 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 1.08 7.42 -51.92 -0.39 0.70 16 46 H 0.06 0.93 7.03 -51.93 -0.36 0.57 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -31.38 364.41 -8.63 -40.01 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.07 Total: 4.24 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.95 Total: -4.19 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.21 Total: -51.67 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.13 Total: -10.97 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.38 -8.63 -40.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094359708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.287 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds