Wall clock time and date at job start Tue Mar 31 2020 12:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40364 * 126.64720 * 2 1 4 4 C 1.35132 * 107.11651 * 179.97438 * 3 2 1 5 5 O 1.33929 * 108.76684 * 359.73749 * 4 3 2 6 6 C 1.34907 * 109.38596 * 0.43560 * 5 4 3 7 7 C 1.46651 * 125.99064 * 179.82821 * 6 5 4 8 8 O 1.21703 * 120.00169 * 179.69280 * 7 6 5 9 9 N 1.34773 * 119.99951 * 359.96633 * 7 6 5 10 10 C 1.46505 * 120.00095 * 179.72488 * 9 7 6 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.53347 * 111.22937 * 297.62799 * 11 10 9 13 13 C 1.55539 * 105.84148 * 241.97510 * 12 11 10 14 14 C 1.54689 * 104.34615 * 334.35564 * 13 12 11 15 15 C 1.54576 * 111.31352 * 177.45035 * 11 10 9 16 16 H 1.08992 * 111.92668 * 18.71574 * 15 11 10 17 17 N 1.46894 * 107.36792 * 255.61864 * 15 11 10 18 18 C 1.36932 * 125.24586 * 181.66116 * 17 15 11 19 19 H 1.08007 * 120.00638 * 359.97269 * 18 17 15 20 20 C 1.38822 * 120.00068 * 179.97438 * 18 17 15 21 21 N 1.31620 * 119.99368 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 120.00353 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47270 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47367 * 119.99750 * 22 20 18 25 25 H 1.48504 * 109.47154 * 240.00061 * 22 20 18 26 26 C 1.46733 * 109.49821 * 1.66221 * 17 15 11 27 27 C 1.53865 * 111.25662 * 61.01810 * 11 10 9 28 28 H 1.09001 * 109.47174 * 270.02151 * 1 2 3 29 29 H 1.08993 * 109.47352 * 30.02241 * 1 2 3 30 30 H 1.08999 * 109.47157 * 150.02611 * 1 2 3 31 31 H 1.08006 * 126.44048 * 359.96007 * 3 2 1 32 32 H 1.08004 * 125.61614 * 179.97438 * 4 3 2 33 33 H 0.97000 * 120.00112 * 359.72923 * 9 7 6 34 34 H 1.09003 * 109.47169 * 299.99748 * 10 9 7 35 35 H 1.08993 * 109.47199 * 60.00009 * 10 9 7 36 36 H 1.09006 * 110.05805 * 1.98185 * 12 11 10 37 37 H 1.08998 * 110.05939 * 123.47552 * 12 11 10 38 38 H 1.08999 * 110.54309 * 215.54971 * 13 12 11 39 39 H 1.09001 * 110.23487 * 93.01558 * 13 12 11 40 40 H 1.08997 * 110.61304 * 278.65072 * 14 13 12 41 41 H 1.09003 * 110.74256 * 155.72317 * 14 13 12 42 42 H 0.96996 * 119.99965 * 180.02562 * 21 20 18 43 43 H 1.09006 * 110.03978 * 221.96487 * 26 17 15 44 44 H 1.08998 * 110.08471 * 100.53720 * 26 17 15 45 45 H 1.09007 * 110.56814 * 212.51482 * 27 11 10 46 46 H 1.09004 * 110.57199 * 335.38538 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3447 1.1262 0.0000 4 6 3.6183 0.6744 0.0006 5 8 3.6005 -0.6647 0.0067 6 6 2.3220 -1.0956 0.0005 7 6 1.8843 -2.4952 0.0007 8 8 0.6967 -2.7614 0.0004 9 7 2.7971 -3.4868 0.0069 10 6 2.3598 -4.8850 0.0131 11 6 3.5844 -5.8023 0.0200 12 6 4.4285 -5.6111 -1.2459 13 6 4.4150 -6.9841 -1.9766 14 6 4.1662 -8.0151 -0.8506 15 6 3.1715 -7.2902 0.0908 16 1 2.1322 -7.4385 -0.2021 17 7 3.4236 -7.7504 1.4629 18 6 3.2164 -9.0245 1.9196 19 1 2.8376 -9.7832 1.2506 20 6 3.4930 -9.3412 3.2426 21 7 3.9549 -8.4168 4.0577 22 14 3.2097 -11.0791 3.8659 23 1 2.6892 -11.9229 2.7603 24 1 4.4919 -11.6435 4.3585 25 1 2.2221 -11.0525 4.9747 26 6 3.9316 -6.6340 2.2683 27 6 4.4452 -5.5743 1.2748 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5141 30 1 -0.3633 -0.8902 -0.5134 31 1 2.0305 2.1595 -0.0006 32 1 4.5046 1.2916 0.0003 33 1 3.7436 -3.2746 0.0072 34 1 1.7597 -5.0741 0.9033 35 1 1.7622 -5.0828 -0.8766 36 1 3.9932 -4.8315 -1.8713 37 1 5.4513 -5.3474 -0.9769 38 1 5.3746 -7.1700 -2.4591 39 1 3.6069 -7.0143 -2.7074 40 1 5.0944 -8.2424 -0.3264 41 1 3.7206 -8.9252 -1.2521 42 1 4.1486 -8.6380 4.9820 43 1 4.7473 -6.9745 2.9062 44 1 3.1301 -6.2172 2.8781 45 1 5.4994 -5.7380 1.0510 46 1 4.2878 -4.5707 1.6700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094359708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:13 Heat of formation + Delta-G solvation = -22.902591 kcal Electronic energy + Delta-G solvation = -27397.885358 eV Core-core repulsion = 23674.546596 eV Total energy + Delta-G solvation = -3723.338762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.65675 -41.34882 -40.08997 -36.45112 -35.59534 -34.89719 -33.47455 -32.22813 -31.32784 -29.57384 -28.40919 -28.28781 -25.91260 -25.67614 -23.74774 -22.38115 -21.77849 -21.37026 -21.00827 -19.79555 -19.15876 -18.69688 -17.43691 -17.09340 -16.85829 -16.85539 -16.27001 -16.19994 -15.66283 -15.19153 -15.11496 -14.59482 -14.41965 -14.38945 -14.18497 -14.01062 -13.87105 -13.51228 -13.46055 -13.22961 -12.93391 -12.87321 -12.77038 -12.64337 -12.43740 -11.98071 -11.88340 -11.62859 -11.59165 -11.46068 -11.36172 -11.17254 -11.05130 -10.68952 -10.65685 -10.26826 -9.54876 -8.83305 -7.76925 -5.17285 0.03892 1.43257 1.45147 1.46044 1.56025 1.69404 2.08255 2.22162 2.50450 3.33824 3.48033 3.64013 3.68488 3.75709 3.83488 3.94328 3.99282 4.25796 4.35812 4.42774 4.52131 4.55166 4.56408 4.64438 4.65520 4.69554 4.75691 4.80252 4.84437 4.92252 5.01586 5.12002 5.14308 5.15260 5.20032 5.26888 5.31862 5.39462 5.44792 5.48707 5.52577 5.60846 5.70940 5.86344 5.88404 6.31054 6.44005 7.00565 7.14930 7.84615 8.46092 9.27139 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018841 B = 0.003212 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.739834 B = 8714.804170 C = 9244.705160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.096 4.096 3 C -0.236 4.236 4 C 0.015 3.985 5 O -0.171 6.171 6 C -0.118 4.118 7 C 0.596 3.404 8 O -0.558 6.558 9 N -0.701 5.701 10 C 0.151 3.849 11 C -0.068 4.068 12 C -0.103 4.103 13 C -0.111 4.111 14 C -0.124 4.124 15 C 0.158 3.842 16 H 0.039 0.961 17 N -0.614 5.614 18 C -0.226 4.226 19 H 0.079 0.921 20 C -0.070 4.070 21 N -0.951 5.951 22 Si 0.975 3.025 23 H -0.267 1.267 24 H -0.292 1.292 25 H -0.297 1.297 26 C 0.169 3.831 27 C -0.118 4.118 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.183 0.817 32 H 0.257 0.743 33 H 0.415 0.585 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.244 0.756 43 H 0.058 0.942 44 H -0.028 1.028 45 H 0.075 0.925 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.366 19.975 -13.278 24.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.254 4.254 4 C -0.054 4.054 5 O -0.066 6.066 6 C -0.169 4.169 7 C 0.384 3.616 8 O -0.439 6.439 9 N -0.352 5.352 10 C 0.028 3.972 11 C -0.069 4.069 12 C -0.140 4.140 13 C -0.149 4.149 14 C -0.164 4.164 15 C 0.051 3.949 16 H 0.057 0.943 17 N -0.338 5.338 18 C -0.355 4.355 19 H 0.097 0.903 20 C -0.262 4.262 21 N -0.601 5.601 22 Si 0.804 3.196 23 H -0.191 1.191 24 H -0.219 1.219 25 H -0.224 1.224 26 C 0.044 3.956 27 C -0.156 4.156 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.201 0.799 32 H 0.273 0.727 33 H 0.252 0.748 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.076 0.924 44 H -0.010 1.010 45 H 0.094 0.906 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.790 19.410 -13.097 23.483 hybrid contribution -0.122 -1.033 1.210 1.596 sum 1.667 18.376 -11.887 21.949 Atomic orbital electron populations 1.20426 0.88195 1.03644 1.02902 1.21028 0.98201 0.91895 0.98739 1.22095 0.92266 1.00655 1.10419 1.25368 1.01440 0.79597 0.98990 1.84055 1.27315 1.24314 1.70945 1.21571 0.82677 0.94066 1.18634 1.16819 0.85436 0.82823 0.76491 1.90827 1.17160 1.83178 1.52742 1.45795 1.10318 1.05559 1.73507 1.21154 0.95958 0.79008 1.01127 1.21758 0.94476 0.93715 0.96966 1.22363 0.99665 0.98065 0.93928 1.22474 1.02340 0.93369 0.96671 1.22815 0.98957 0.98097 0.96523 1.21815 0.96060 0.91650 0.85356 0.94327 1.44600 1.75774 1.06656 1.06758 1.19418 1.35363 0.86565 0.94164 0.90271 1.25583 1.02512 1.01493 0.96648 1.70147 1.52271 1.32858 1.04821 0.85050 0.76782 0.79857 0.77934 1.19097 1.21860 1.22420 1.21165 0.96015 0.86298 0.92164 1.22638 0.99200 0.98695 0.95065 0.90917 0.88981 0.91734 0.79917 0.72736 0.74809 0.94235 0.90694 0.89965 0.90180 0.90249 0.90814 0.93264 0.92961 0.94669 0.92436 1.01002 0.90616 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.01 9.82 71.23 0.70 -1.31 16 2 C -0.10 -2.13 6.20 -19.74 -0.12 -2.25 16 3 C -0.24 -3.46 10.83 22.07 0.24 -3.22 16 4 C 0.02 0.19 12.08 67.10 0.81 1.00 16 5 O -0.17 -3.42 10.40 -4.96 -0.05 -3.48 16 6 C -0.12 -3.01 7.13 24.07 0.17 -2.84 16 7 C 0.60 18.25 7.79 86.44 0.67 18.92 16 8 O -0.56 -20.60 14.74 -4.36 -0.06 -20.67 16 9 N -0.70 -19.39 4.64 -467.09 -2.17 -21.56 16 10 C 0.15 4.86 4.43 86.38 0.38 5.25 16 11 C -0.07 -2.19 0.53 -51.24 -0.03 -2.21 16 12 C -0.10 -2.46 5.75 31.59 0.18 -2.28 16 13 C -0.11 -2.75 6.88 32.04 0.22 -2.53 16 14 C -0.12 -4.32 6.23 31.84 0.20 -4.12 16 15 C 0.16 6.34 3.60 46.12 0.17 6.50 16 16 H 0.04 1.62 7.92 -2.39 -0.02 1.60 16 17 N -0.61 -31.42 2.99 -667.79 -1.99 -33.41 16 18 C -0.23 -12.72 9.96 84.04 0.84 -11.88 16 19 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 20 C -0.07 -4.05 5.48 84.86 0.47 -3.59 16 21 N -0.95 -57.95 10.14 21.65 0.22 -57.73 16 22 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 25 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 26 C 0.17 8.48 5.65 86.70 0.49 8.97 16 27 C -0.12 -4.24 5.77 31.25 0.18 -4.06 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.68 6.44 -2.39 -0.02 1.66 16 31 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.26 0.45 8.06 -2.91 -0.02 0.42 16 33 H 0.41 9.60 7.31 -92.71 -0.68 8.93 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.08 1.68 7.51 -2.38 -0.02 1.67 16 37 H 0.08 1.75 7.28 -2.39 -0.02 1.73 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.05 1.94 8.06 -2.39 -0.02 1.92 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 43 H 0.06 3.29 6.16 -2.38 -0.01 3.27 16 44 H -0.03 -1.59 8.14 -2.39 -0.02 -1.61 16 45 H 0.08 2.55 7.42 -2.38 -0.02 2.53 16 46 H 0.07 2.37 7.03 -2.39 -0.02 2.35 16 Total: -1.00 -73.96 364.41 3.84 -70.12 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.31 Total: 17.59 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 5.56 Total: 0.35 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -3.94 Total: -112.70 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.12 Total: -24.14 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -73.96 3.84 -70.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094359708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.214 kcal (2) G-P(sol) polarization free energy of solvation -73.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds