Wall clock time and date at job start Tue Mar 31 2020 13:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46835 * 2 1 4 4 H 1.09003 * 109.50127 * 54.93238 * 3 2 1 5 5 C 1.53038 * 109.49963 * 175.00012 * 3 2 1 6 6 C 1.53043 * 109.52991 * 181.35572 * 5 3 2 7 7 C 1.53191 * 109.30947 * 298.61462 * 6 5 3 8 8 N 1.46927 * 108.76634 * 54.65292 * 7 6 5 9 9 C 1.34779 * 120.62914 * 126.40566 * 8 7 6 10 10 O 1.21587 * 120.00232 * 175.81457 * 9 8 7 11 11 N 1.34783 * 119.99726 * 355.80876 * 9 8 7 12 12 C 1.40026 * 119.99630 * 186.00034 * 11 9 8 13 13 C 1.38907 * 120.00472 * 33.85979 * 12 11 9 14 14 C 1.38011 * 119.99997 * 179.79140 * 13 12 11 15 15 C 1.38901 * 120.00268 * 0.46075 * 14 13 12 16 16 O 1.35782 * 119.99974 * 179.76853 * 15 14 13 17 17 C 1.34816 * 116.99800 * 174.03614 * 16 15 14 18 18 H 1.07997 * 119.99663 * 354.44832 * 17 16 15 19 19 C 1.38631 * 119.99902 * 174.45744 * 17 16 15 20 20 N 1.31580 * 119.99828 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 119.99919 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47280 * 59.99812 * 21 19 17 23 23 H 1.48498 * 109.47227 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47395 * 299.99951 * 21 19 17 25 25 C 1.38902 * 119.99715 * 359.79768 * 15 14 13 26 26 C 1.38005 * 120.00446 * 359.97188 * 25 15 14 27 27 C 1.46917 * 118.74186 * 306.38404 * 8 7 6 28 28 H 1.08994 * 109.47246 * 299.99718 * 1 2 3 29 29 H 1.08994 * 109.47285 * 60.00345 * 1 2 3 30 30 H 1.09007 * 109.46557 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47246 * 240.00282 * 2 1 3 32 32 H 1.09003 * 109.47386 * 119.99481 * 2 1 3 33 33 H 1.09005 * 109.46082 * 301.36806 * 5 3 2 34 34 H 1.09000 * 109.46321 * 61.34211 * 5 3 2 35 35 H 1.09000 * 109.49488 * 58.57866 * 6 5 3 36 36 H 1.08996 * 109.49768 * 178.67515 * 6 5 3 37 37 H 1.09007 * 109.60067 * 294.86470 * 7 6 5 38 38 H 1.09001 * 109.70109 * 174.50919 * 7 6 5 39 39 H 0.96997 * 120.00164 * 6.00160 * 11 9 8 40 40 H 1.08008 * 119.99966 * 0.02829 * 13 12 11 41 41 H 1.08005 * 119.99978 * 180.23512 * 14 13 12 42 42 H 0.97000 * 119.99570 * 179.97438 * 20 19 17 43 43 H 1.08005 * 119.99528 * 179.97438 * 25 15 14 44 44 H 1.08000 * 120.00057 * 180.02562 * 26 25 15 45 45 H 1.09002 * 109.58904 * 293.82208 * 27 8 7 46 46 H 1.09003 * 109.70681 * 173.46314 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6046 1.9824 0.8410 5 6 3.5651 1.4452 0.1257 6 6 4.0732 2.8885 0.1598 7 6 3.6950 3.5896 -1.1486 8 7 2.2448 3.4651 -1.3496 9 6 1.4854 4.5573 -1.5665 10 8 0.2998 4.4354 -1.8069 11 7 2.0402 5.7846 -1.5167 12 6 1.2313 6.9231 -1.6168 13 6 -0.0515 6.9128 -1.0840 14 6 -0.8471 8.0365 -1.1788 15 6 -0.3688 9.1746 -1.8154 16 8 -1.1534 10.2785 -1.9128 17 6 -0.5881 11.3873 -2.4310 18 1 0.4666 11.3977 -2.6629 19 6 -1.3607 12.5142 -2.6658 20 7 -2.6457 12.5013 -2.3834 21 14 -0.5773 14.0508 -3.3830 22 1 0.0084 13.7343 -4.7104 23 1 -1.6097 15.1069 -3.5371 24 1 0.4922 14.5325 -2.4723 25 6 0.9120 9.1831 -2.3529 26 6 1.7095 8.0611 -2.2540 27 6 1.6384 2.1276 -1.3101 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8546 0.9366 1.0453 34 1 4.0009 0.9270 -0.7285 35 1 3.6185 3.4144 0.9993 36 1 5.1572 2.8900 0.2730 37 1 4.2207 3.1203 -1.9802 38 1 3.9670 4.6437 -1.0927 39 1 2.9999 5.8791 -1.4117 40 1 -0.4248 6.0267 -0.5921 41 1 -1.8432 8.0297 -0.7612 42 1 -3.1862 13.2899 -2.5474 43 1 1.2838 10.0679 -2.8483 44 1 2.7054 8.0680 -2.6716 45 1 1.9964 1.5389 -2.1548 46 1 0.5530 2.2145 -1.3592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043557832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:46 Heat of formation + Delta-G solvation = -53.783966 kcal Electronic energy + Delta-G solvation = -26287.738656 eV Core-core repulsion = 22563.060778 eV Total energy + Delta-G solvation = -3724.677879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.89713 -40.64856 -39.30048 -38.00629 -35.93930 -35.05891 -34.10498 -33.18165 -31.87472 -30.39611 -29.33879 -27.38054 -26.25830 -25.15475 -23.91854 -23.12034 -22.39583 -21.41231 -20.63108 -19.81777 -19.43348 -18.87204 -17.91979 -16.75394 -16.56748 -16.38036 -16.20983 -15.84181 -15.50407 -15.43481 -15.19002 -14.87928 -14.60895 -14.51887 -14.36440 -14.28358 -14.05771 -13.72699 -13.54502 -13.27148 -13.18558 -12.97629 -12.69670 -12.56564 -12.38859 -12.14417 -12.07108 -11.90667 -11.57982 -11.50796 -11.39578 -11.24393 -11.15063 -10.94564 -10.55972 -9.84698 -9.65688 -8.55888 -8.43792 -6.11139 0.52499 0.57659 1.37629 1.47804 1.54291 1.55469 2.06022 2.20655 2.84434 2.85025 3.18092 3.52084 3.71280 3.83527 3.89413 4.04721 4.07723 4.13515 4.21435 4.37825 4.42757 4.46193 4.49979 4.57006 4.62893 4.71658 4.76354 4.82171 4.88369 4.99135 5.03687 5.05421 5.11321 5.18058 5.18629 5.20808 5.30663 5.32835 5.38664 5.43353 5.51578 5.56992 5.61943 5.70088 5.92475 6.04033 6.18543 6.87768 7.00256 7.48790 7.81507 8.79558 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.030916 B = 0.002347 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.460740 B =11925.295792 C =12579.184098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.109 4.109 3 C -0.098 4.098 4 H 0.055 0.945 5 C -0.110 4.110 6 C -0.132 4.132 7 C 0.102 3.898 8 N -0.622 5.622 9 C 0.696 3.304 10 O -0.621 6.621 11 N -0.664 5.664 12 C 0.083 3.917 13 C -0.073 4.073 14 C -0.187 4.187 15 C 0.106 3.894 16 O -0.232 6.232 17 C -0.412 4.412 18 H 0.107 0.893 19 C -0.027 4.027 20 N -0.924 5.924 21 Si 1.021 2.979 22 H -0.256 1.256 23 H -0.275 1.275 24 H -0.255 1.255 25 C -0.216 4.216 26 C -0.082 4.082 27 C 0.130 3.870 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.418 0.582 40 H 0.124 0.876 41 H 0.111 0.889 42 H 0.272 0.728 43 H 0.134 0.866 44 H 0.158 0.842 45 H 0.078 0.922 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.804 -23.526 4.110 31.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.147 4.147 3 C -0.118 4.118 4 H 0.074 0.926 5 C -0.148 4.148 6 C -0.170 4.170 7 C -0.020 4.020 8 N -0.358 5.358 9 C 0.399 3.601 10 O -0.502 6.502 11 N -0.316 5.316 12 C -0.011 4.011 13 C -0.094 4.094 14 C -0.207 4.207 15 C 0.056 3.944 16 O -0.138 6.138 17 C -0.488 4.488 18 H 0.124 0.876 19 C -0.224 4.224 20 N -0.562 5.562 21 Si 0.840 3.160 22 H -0.180 1.180 23 H -0.200 1.200 24 H -0.179 1.179 25 C -0.236 4.236 26 C -0.102 4.102 27 C 0.007 3.993 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.259 0.741 40 H 0.142 0.858 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.152 0.848 44 H 0.176 0.824 45 H 0.097 0.903 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 18.593 -23.505 4.011 30.237 hybrid contribution -0.215 0.940 -0.163 0.978 sum 18.378 -22.565 3.848 29.356 Atomic orbital electron populations 1.21857 0.96660 1.01915 1.01275 1.21486 0.95192 0.94781 1.03276 1.21543 0.97383 0.96484 0.96366 0.92646 1.21571 0.93293 0.96540 1.03385 1.21921 1.02658 0.96111 0.96319 1.21996 0.78430 1.02182 0.99427 1.47360 1.08717 1.05085 1.74687 1.16081 0.84764 0.81200 0.78092 1.90916 1.16342 1.85714 1.57192 1.42349 1.10716 1.02121 1.76436 1.17151 0.92536 0.87515 1.03904 1.20668 0.93796 0.96255 0.98633 1.20217 1.01334 0.92437 1.06724 1.19832 0.91536 0.87924 0.95134 1.83972 1.38583 1.17631 1.73660 1.21826 0.95640 0.88459 1.42871 0.87619 1.26651 0.95927 1.02471 0.97307 1.70210 1.07285 1.31362 1.47327 0.84613 0.77709 0.74642 0.79032 1.18026 1.19990 1.17894 1.21121 0.94510 1.00820 1.07168 1.20786 1.00825 0.91111 0.97460 1.21666 0.98622 0.80614 0.98361 0.93628 0.93621 0.91717 0.90633 0.90444 0.90478 0.90346 0.92684 0.88036 0.89117 0.89453 0.74125 0.85812 0.87067 0.91927 0.84827 0.82401 0.90347 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.67 71.98 0.70 -1.57 16 2 C -0.11 -1.19 5.41 30.60 0.17 -1.03 16 3 C -0.10 -1.33 2.33 -10.71 -0.03 -1.35 16 4 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 5 C -0.11 -0.94 5.17 30.62 0.16 -0.78 16 6 C -0.13 -1.14 6.08 30.67 0.19 -0.96 16 7 C 0.10 1.14 6.43 86.36 0.56 1.69 16 8 N -0.62 -12.62 2.97 -836.90 -2.49 -15.10 16 9 C 0.70 20.60 8.02 179.05 1.44 22.04 16 10 O -0.62 -24.56 13.53 -3.99 -0.05 -24.61 16 11 N -0.66 -17.73 5.25 -317.04 -1.67 -19.39 16 12 C 0.08 2.93 6.27 38.15 0.24 3.17 16 13 C -0.07 -3.03 8.64 22.38 0.19 -2.84 16 14 C -0.19 -8.89 9.98 22.37 0.22 -8.67 16 15 C 0.11 5.50 6.65 22.59 0.15 5.65 16 16 O -0.23 -14.28 9.76 -22.96 -0.22 -14.50 16 17 C -0.41 -24.06 9.44 67.91 0.64 -23.42 16 18 H 0.11 5.53 5.30 -2.91 -0.02 5.51 16 19 C -0.03 -1.52 5.49 84.82 0.47 -1.05 16 20 N -0.92 -57.70 13.67 21.61 0.30 -57.40 16 21 Si 1.02 42.84 29.55 68.60 2.03 44.87 16 22 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 23 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 25 C -0.22 -9.37 9.12 22.37 0.20 -9.16 16 26 C -0.08 -2.79 9.96 22.38 0.22 -2.57 16 27 C 0.13 2.42 5.32 86.37 0.46 2.88 16 28 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.04 0.77 6.70 -2.39 -0.02 0.76 16 30 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.09 0.78 5.57 -2.39 -0.01 0.77 16 39 H 0.42 7.50 6.28 -92.71 -0.58 6.92 16 40 H 0.12 5.14 6.47 -2.91 -0.02 5.12 16 41 H 0.11 5.30 8.06 -2.91 -0.02 5.28 16 42 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 43 H 0.13 5.65 5.71 -2.91 -0.02 5.63 16 44 H 0.16 3.90 8.06 -2.91 -0.02 3.87 16 45 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.07 1.67 5.75 -2.39 -0.01 1.66 16 Total: -1.00 -79.44 365.81 4.28 -75.16 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.41 Total: 28.95 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 5.97 Total: -17.97 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -3.86 Total: -91.90 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.28 Total: -39.11 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -79.44 4.28 -75.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043557832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.373 kcal (2) G-P(sol) polarization free energy of solvation -79.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds