Wall clock time and date at job start Tue Mar 31 2020 12:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46913 * 2 1 4 4 C 1.52998 * 109.46846 * 120.00273 * 2 1 3 5 5 N 1.46503 * 109.46761 * 175.00041 * 4 2 1 6 6 C 1.34779 * 120.00053 * 90.00052 * 5 4 2 7 7 O 1.21589 * 120.00137 * 6.34172 * 6 5 4 8 8 N 1.34779 * 119.99749 * 186.35185 * 6 5 4 9 9 C 1.40032 * 119.99645 * 171.16099 * 8 6 5 10 10 C 1.38908 * 120.00036 * 205.57513 * 9 8 6 11 11 C 1.38008 * 119.99996 * 180.02562 * 10 9 8 12 12 C 1.38904 * 120.00125 * 0.02562 * 11 10 9 13 13 O 1.35783 * 119.99834 * 179.97438 * 12 11 10 14 14 C 1.34815 * 116.99825 * 351.68306 * 13 12 11 15 15 H 1.07993 * 120.00524 * 5.34386 * 14 13 12 16 16 C 1.38627 * 119.99461 * 185.35120 * 14 13 12 17 17 N 1.31569 * 120.00481 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99742 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47189 * 60.00023 * 18 16 14 20 20 H 1.48500 * 109.46872 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46852 * 299.99842 * 18 16 14 22 22 C 1.38906 * 120.00220 * 0.23111 * 12 11 10 23 23 C 1.38017 * 119.99476 * 359.48988 * 22 12 11 24 24 C 1.46498 * 120.00021 * 270.00196 * 5 4 2 25 25 C 1.52999 * 117.49944 * 11.18180 * 24 5 4 26 26 C 1.53001 * 60.00112 * 252.51099 * 25 24 5 27 27 H 1.09000 * 109.46831 * 299.99581 * 1 2 3 28 28 H 1.09001 * 109.47238 * 59.99583 * 1 2 3 29 29 H 1.09001 * 109.47196 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46831 * 240.00419 * 2 1 3 31 31 H 1.09005 * 109.47085 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47480 * 300.00385 * 3 2 1 33 33 H 1.09007 * 109.46968 * 60.00172 * 3 2 1 34 34 H 1.08994 * 109.47368 * 55.00372 * 4 2 1 35 35 H 1.08999 * 109.47504 * 294.99347 * 4 2 1 36 36 H 0.96993 * 120.00469 * 351.15161 * 8 6 5 37 37 H 1.08006 * 119.99790 * 359.97438 * 10 9 8 38 38 H 1.08000 * 119.99817 * 180.02562 * 11 10 9 39 39 H 0.97001 * 120.00747 * 180.02562 * 17 16 14 40 40 H 1.07999 * 119.99907 * 179.74723 * 22 12 11 41 41 H 1.07999 * 119.99256 * 180.23225 * 23 22 12 42 42 H 1.09007 * 115.55228 * 156.89472 * 24 5 4 43 43 H 1.08998 * 117.49808 * 0.02562 * 25 24 5 44 44 H 1.09006 * 117.49724 * 145.02220 * 25 24 5 45 45 H 1.09000 * 117.50006 * 252.50488 * 26 25 24 46 46 H 1.09000 * 117.51532 * 107.47965 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.2676 0.1491 1.7156 7 8 3.7537 1.0580 2.3386 8 7 5.6047 0.1173 1.5499 9 6 6.3838 1.2169 1.9305 10 6 7.6107 1.4435 1.3199 11 6 8.3787 2.5269 1.6954 12 6 7.9251 3.3904 2.6843 13 8 8.6810 4.4561 3.0541 14 6 9.9300 4.5243 2.5514 15 1 10.2582 3.8005 1.8202 16 6 10.7932 5.5236 2.9733 17 7 10.3934 6.4058 3.8638 18 14 12.5243 5.6178 2.2773 19 1 12.4566 5.8001 0.8051 20 1 13.2408 6.7671 2.8865 21 1 13.2516 4.3609 2.5876 22 6 6.7006 3.1609 3.2987 23 6 5.9299 2.0807 2.9191 24 6 4.1258 -1.9919 0.5611 25 6 3.2235 -2.9302 -0.2428 26 6 3.7685 -3.3719 1.1169 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6054 -1.7198 1.2951 35 1 1.7517 -0.1584 2.1370 36 1 6.0275 -0.6673 1.1671 37 1 7.9640 0.7713 0.5518 38 1 9.3324 2.7033 1.2204 39 1 10.9972 7.1053 4.1588 40 1 6.3498 3.8300 4.0704 41 1 4.9762 1.9043 3.3942 42 1 5.1441 -1.8422 0.2019 43 1 2.1643 -2.6801 -0.3037 44 1 3.6479 -3.3979 -1.1312 45 1 4.5515 -4.1302 1.1230 46 1 3.0682 -3.4126 1.9511 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043558090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:12 Heat of formation + Delta-G solvation = 8.659383 kcal Electronic energy + Delta-G solvation = -26600.975758 eV Core-core repulsion = 22879.005626 eV Total energy + Delta-G solvation = -3721.970132 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.82649 -39.00210 -37.94208 -36.53171 -35.77080 -33.93142 -32.73230 -32.06288 -30.12221 -28.15156 -27.22880 -26.30466 -25.18259 -23.01986 -22.73479 -22.17721 -21.50353 -20.41889 -19.34362 -18.75284 -17.82982 -17.24122 -16.56999 -15.89588 -15.56440 -15.24449 -15.01668 -14.51470 -14.36826 -14.24388 -13.88625 -13.50120 -13.41627 -13.24639 -12.73850 -12.60401 -12.41117 -12.30320 -12.18466 -11.94522 -11.80860 -11.75165 -11.53951 -11.47711 -11.09426 -11.03400 -10.98654 -10.97838 -10.76862 -10.73189 -10.46143 -9.72734 -9.48759 -9.17901 -8.71424 -8.56279 -8.12760 -6.80283 -6.38255 -3.96569 2.21357 2.31211 2.52151 3.11388 3.16059 3.19386 3.20087 3.55347 3.76339 4.01614 4.35819 4.44152 4.52320 4.62675 4.67909 4.77469 4.91130 5.14192 5.15930 5.22760 5.34983 5.38485 5.43472 5.48007 5.54091 5.59183 5.68077 5.70362 5.74833 5.81054 5.86038 5.95609 6.12705 6.15603 6.24383 6.28702 6.39830 6.46034 6.71346 6.95851 6.99955 7.14838 7.28513 7.29953 7.49286 7.88657 8.02567 8.06414 8.65872 9.06979 9.79178 10.79905 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024079 B = 0.002600 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.564447 B =10767.771919 C =11350.230000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.139 4.139 4 C 0.134 3.866 5 N -0.601 5.601 6 C 0.709 3.291 7 O -0.565 6.565 8 N -0.672 5.672 9 C 0.057 3.943 10 C -0.100 4.100 11 C -0.216 4.216 12 C 0.142 3.858 13 O -0.180 6.180 14 C -0.391 4.391 15 H 0.090 0.910 16 C 0.038 3.962 17 N -0.864 5.864 18 Si 0.940 3.060 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.271 1.271 22 C -0.176 4.176 23 C -0.085 4.085 24 C 0.070 3.930 25 C -0.183 4.183 26 C -0.193 4.193 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.397 0.603 37 H 0.108 0.892 38 H 0.130 0.870 39 H 0.270 0.730 40 H 0.120 0.880 41 H 0.150 0.850 42 H 0.125 0.875 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.923 -19.456 -9.085 26.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.196 4.196 4 C 0.011 3.989 5 N -0.336 5.336 6 C 0.412 3.588 7 O -0.442 6.442 8 N -0.319 5.319 9 C -0.036 4.036 10 C -0.121 4.121 11 C -0.236 4.236 12 C 0.088 3.912 13 O -0.084 6.084 14 C -0.467 4.467 15 H 0.107 0.893 16 C -0.166 4.166 17 N -0.500 5.500 18 Si 0.764 3.236 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.196 1.196 22 C -0.196 4.196 23 C -0.105 4.105 24 C -0.036 4.036 25 C -0.221 4.221 26 C -0.232 4.232 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.232 0.768 37 H 0.126 0.874 38 H 0.147 0.853 39 H 0.079 0.921 40 H 0.138 0.862 41 H 0.168 0.832 42 H 0.142 0.858 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.269 -18.356 -8.364 25.299 hybrid contribution 1.225 -0.521 -0.792 1.549 sum -14.043 -18.877 -9.156 25.247 Atomic orbital electron populations 1.21777 0.94752 1.01457 1.02263 1.21557 0.95640 0.97654 0.98338 1.21773 1.01539 0.94869 1.01460 1.21435 0.77785 1.00483 0.99195 1.46623 1.06044 1.20032 1.60920 1.15757 0.81200 0.82009 0.79865 1.90827 1.72677 1.36006 1.44683 1.42449 1.04840 1.18602 1.66040 1.17163 0.93399 0.91981 1.01042 1.20360 0.94093 0.98248 0.99357 1.20923 1.02380 0.97731 1.02555 1.19442 0.91713 0.87464 0.92539 1.83992 1.24753 1.36274 1.63366 1.21238 0.86364 1.15114 1.23985 0.89276 1.25262 0.99623 0.95330 0.96357 1.70035 1.36412 1.14823 1.28709 0.85807 0.80533 0.78255 0.78958 1.19586 1.20339 1.19581 1.20251 0.94717 1.00700 1.03903 1.21317 1.00179 0.93811 0.95228 1.21611 0.97543 0.83055 1.01346 1.23373 1.00331 1.02713 0.95665 1.23449 1.04369 0.98088 0.97319 0.92346 0.92427 0.92882 0.91231 0.92627 0.93496 0.92043 0.90874 0.89295 0.76769 0.87420 0.85250 0.92056 0.86246 0.83234 0.85752 0.87945 0.87884 0.87941 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.19 37.16 0.34 -0.71 16 2 C -0.11 -1.02 2.93 -90.62 -0.27 -1.28 16 3 C -0.14 -1.67 8.06 37.16 0.30 -1.37 16 4 C 0.13 1.27 4.27 -4.04 -0.02 1.26 16 5 N -0.60 -6.45 2.70 -171.80 -0.46 -6.91 16 6 C 0.71 10.39 6.54 -86.91 -0.57 9.82 16 7 O -0.56 -10.14 11.50 5.29 0.06 -10.08 16 8 N -0.67 -9.64 5.26 -14.18 -0.07 -9.71 16 9 C 0.06 1.04 6.47 -83.62 -0.54 0.50 16 10 C -0.10 -1.83 9.93 -39.42 -0.39 -2.22 16 11 C -0.22 -4.72 9.15 -39.42 -0.36 -5.08 16 12 C 0.14 3.53 6.64 -39.09 -0.26 3.27 16 13 O -0.18 -5.25 9.76 -0.01 0.00 -5.25 16 14 C -0.39 -11.05 9.48 30.88 0.29 -10.76 16 15 H 0.09 2.31 5.22 -52.49 -0.27 2.04 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.78 13.67 55.48 0.76 -25.03 16 18 Si 0.94 20.72 29.55 -169.99 -5.02 15.69 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 C -0.18 -3.99 9.99 -39.42 -0.39 -4.38 16 23 C -0.09 -1.74 8.85 -39.41 -0.35 -2.09 16 24 C 0.07 0.55 6.13 -67.93 -0.42 0.13 16 25 C -0.18 -1.06 9.51 -26.73 -0.25 -1.32 16 26 C -0.19 -1.21 10.06 -26.73 -0.27 -1.48 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.61 7.52 -51.93 -0.39 0.22 16 31 H 0.05 0.81 6.18 -51.93 -0.32 0.49 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.81 8.11 -51.92 -0.42 0.39 16 34 H 0.07 0.53 6.28 -51.93 -0.33 0.21 16 35 H 0.09 1.01 7.34 -51.93 -0.38 0.63 16 36 H 0.40 4.36 6.51 -40.82 -0.27 4.10 16 37 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.13 2.79 5.67 -52.49 -0.30 2.49 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 41 H 0.15 3.05 5.37 -52.49 -0.28 2.77 16 42 H 0.12 0.85 6.39 -51.93 -0.33 0.52 16 43 H 0.10 0.59 6.00 -51.93 -0.31 0.28 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.10 0.66 7.97 -51.93 -0.41 0.25 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -32.88 368.32 -8.97 -41.86 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.53 Total: 8.61 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -3.25 Total: -14.74 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.22 Total: -41.65 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.06 Total: -15.33 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.88 -8.97 -41.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043558090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.515 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds