Wall clock time and date at job start Tue Mar 31 2020 12:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46913 * 2 1 4 4 C 1.52998 * 109.46846 * 120.00273 * 2 1 3 5 5 N 1.46503 * 109.46761 * 175.00041 * 4 2 1 6 6 C 1.34779 * 120.00053 * 90.00052 * 5 4 2 7 7 O 1.21589 * 120.00137 * 6.34172 * 6 5 4 8 8 N 1.34779 * 119.99749 * 186.35185 * 6 5 4 9 9 C 1.40032 * 119.99645 * 171.16099 * 8 6 5 10 10 C 1.38908 * 120.00036 * 205.57513 * 9 8 6 11 11 C 1.38008 * 119.99996 * 180.02562 * 10 9 8 12 12 C 1.38904 * 120.00125 * 0.02562 * 11 10 9 13 13 O 1.35783 * 119.99834 * 179.97438 * 12 11 10 14 14 C 1.34815 * 116.99825 * 351.68306 * 13 12 11 15 15 H 1.07993 * 120.00524 * 5.34386 * 14 13 12 16 16 C 1.38627 * 119.99461 * 185.35120 * 14 13 12 17 17 N 1.31569 * 120.00481 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99742 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47189 * 60.00023 * 18 16 14 20 20 H 1.48500 * 109.46872 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46852 * 299.99842 * 18 16 14 22 22 C 1.38906 * 120.00220 * 0.23111 * 12 11 10 23 23 C 1.38017 * 119.99476 * 359.48988 * 22 12 11 24 24 C 1.46498 * 120.00021 * 270.00196 * 5 4 2 25 25 C 1.52999 * 117.49944 * 11.18180 * 24 5 4 26 26 C 1.53001 * 60.00112 * 252.51099 * 25 24 5 27 27 H 1.09000 * 109.46831 * 299.99581 * 1 2 3 28 28 H 1.09001 * 109.47238 * 59.99583 * 1 2 3 29 29 H 1.09001 * 109.47196 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46831 * 240.00419 * 2 1 3 31 31 H 1.09005 * 109.47085 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47480 * 300.00385 * 3 2 1 33 33 H 1.09007 * 109.46968 * 60.00172 * 3 2 1 34 34 H 1.08994 * 109.47368 * 55.00372 * 4 2 1 35 35 H 1.08999 * 109.47504 * 294.99347 * 4 2 1 36 36 H 0.96993 * 120.00469 * 351.15161 * 8 6 5 37 37 H 1.08006 * 119.99790 * 359.97438 * 10 9 8 38 38 H 1.08000 * 119.99817 * 180.02562 * 11 10 9 39 39 H 0.97001 * 120.00747 * 180.02562 * 17 16 14 40 40 H 1.07999 * 119.99907 * 179.74723 * 22 12 11 41 41 H 1.07999 * 119.99256 * 180.23225 * 23 22 12 42 42 H 1.09007 * 115.55228 * 156.89472 * 24 5 4 43 43 H 1.08998 * 117.49808 * 0.02562 * 25 24 5 44 44 H 1.09006 * 117.49724 * 145.02220 * 25 24 5 45 45 H 1.09000 * 117.50006 * 252.50488 * 26 25 24 46 46 H 1.09000 * 117.51532 * 107.47965 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.2676 0.1491 1.7156 7 8 3.7537 1.0580 2.3386 8 7 5.6047 0.1173 1.5499 9 6 6.3838 1.2169 1.9305 10 6 7.6107 1.4435 1.3199 11 6 8.3787 2.5269 1.6954 12 6 7.9251 3.3904 2.6843 13 8 8.6810 4.4561 3.0541 14 6 9.9300 4.5243 2.5514 15 1 10.2582 3.8005 1.8202 16 6 10.7932 5.5236 2.9733 17 7 10.3934 6.4058 3.8638 18 14 12.5243 5.6178 2.2773 19 1 12.4566 5.8001 0.8051 20 1 13.2408 6.7671 2.8865 21 1 13.2516 4.3609 2.5876 22 6 6.7006 3.1609 3.2987 23 6 5.9299 2.0807 2.9191 24 6 4.1258 -1.9919 0.5611 25 6 3.2235 -2.9302 -0.2428 26 6 3.7685 -3.3719 1.1169 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6054 -1.7198 1.2951 35 1 1.7517 -0.1584 2.1370 36 1 6.0275 -0.6673 1.1671 37 1 7.9640 0.7713 0.5518 38 1 9.3324 2.7033 1.2204 39 1 10.9972 7.1053 4.1588 40 1 6.3498 3.8300 4.0704 41 1 4.9762 1.9043 3.3942 42 1 5.1441 -1.8422 0.2019 43 1 2.1643 -2.6801 -0.3037 44 1 3.6479 -3.3979 -1.1312 45 1 4.5515 -4.1302 1.1230 46 1 3.0682 -3.4126 1.9511 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043558090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:12 Heat of formation + Delta-G solvation = -11.193814 kcal Electronic energy + Delta-G solvation = -26601.836657 eV Core-core repulsion = 22879.005626 eV Total energy + Delta-G solvation = -3722.831031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.95778 -40.62000 -39.12216 -37.92314 -36.67774 -35.31108 -34.18947 -33.52666 -31.82189 -29.63924 -28.07924 -27.55506 -26.89741 -24.05054 -23.70035 -23.23645 -22.90083 -21.47490 -20.45069 -19.87173 -19.47829 -18.85795 -18.06696 -16.91301 -16.67711 -16.34443 -16.31802 -15.91933 -15.65252 -15.50183 -15.22635 -15.06665 -14.70247 -14.50457 -14.17883 -13.96181 -13.57689 -13.33178 -13.29665 -13.24517 -13.08412 -12.78987 -12.67831 -12.57353 -12.47874 -12.29051 -12.15428 -11.88284 -11.71341 -11.68695 -11.43712 -11.29355 -11.19699 -10.72381 -10.54698 -9.81695 -9.46429 -8.49411 -8.42014 -6.10264 0.54431 0.63189 1.37148 1.47659 1.50408 1.54021 2.03051 2.21022 2.75162 2.85409 2.96854 3.18844 3.57777 3.78399 3.85526 3.94101 3.94592 4.05973 4.11450 4.17223 4.19227 4.43403 4.53138 4.59109 4.65562 4.73540 4.78036 4.80070 4.86927 4.88313 4.96225 5.03909 5.06849 5.11448 5.21147 5.26037 5.27232 5.30748 5.38457 5.42667 5.43670 5.58407 5.64352 5.72608 5.94119 6.05395 6.23416 6.90671 7.01213 7.49950 7.83668 8.80680 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024079 B = 0.002600 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.564447 B =10767.771919 C =11350.230000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C -0.135 4.135 4 C 0.132 3.868 5 N -0.591 5.591 6 C 0.703 3.297 7 O -0.604 6.604 8 N -0.662 5.662 9 C 0.087 3.913 10 C -0.088 4.088 11 C -0.215 4.215 12 C 0.102 3.898 13 O -0.235 6.235 14 C -0.412 4.412 15 H 0.106 0.894 16 C -0.027 4.027 17 N -0.925 5.925 18 Si 1.020 2.980 19 H -0.256 1.256 20 H -0.275 1.275 21 H -0.255 1.255 22 C -0.188 4.188 23 C -0.093 4.093 24 C 0.041 3.959 25 C -0.165 4.165 26 C -0.186 4.186 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.027 0.973 32 H 0.054 0.946 33 H 0.038 0.962 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.418 0.582 37 H 0.158 0.842 38 H 0.133 0.867 39 H 0.271 0.729 40 H 0.108 0.892 41 H 0.150 0.850 42 H 0.136 0.864 43 H 0.106 0.894 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.245 -23.643 -12.049 30.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.193 4.193 4 C 0.009 3.991 5 N -0.324 5.324 6 C 0.406 3.594 7 O -0.484 6.484 8 N -0.312 5.312 9 C -0.008 4.008 10 C -0.109 4.109 11 C -0.235 4.235 12 C 0.051 3.949 13 O -0.142 6.142 14 C -0.488 4.488 15 H 0.123 0.877 16 C -0.224 4.224 17 N -0.564 5.564 18 Si 0.839 3.161 19 H -0.180 1.180 20 H -0.200 1.200 21 H -0.180 1.180 22 C -0.207 4.207 23 C -0.113 4.113 24 C -0.063 4.063 25 C -0.203 4.203 26 C -0.225 4.225 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.257 0.743 37 H 0.176 0.824 38 H 0.150 0.850 39 H 0.080 0.920 40 H 0.126 0.874 41 H 0.167 0.833 42 H 0.154 0.846 43 H 0.124 0.876 44 H 0.139 0.861 45 H 0.135 0.865 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.651 -22.664 -11.379 29.801 hybrid contribution 0.989 0.495 0.067 1.108 sum -14.661 -22.169 -11.312 28.886 Atomic orbital electron populations 1.21749 0.93083 1.02905 1.02129 1.21504 0.96936 0.95383 0.98487 1.21725 0.99593 0.97202 1.00769 1.21559 0.77194 1.01839 0.98482 1.46603 1.06207 1.19833 1.59807 1.15959 0.81275 0.82438 0.79748 1.90807 1.73287 1.37895 1.46401 1.42273 1.04772 1.18198 1.65924 1.17246 0.93242 0.91687 0.98636 1.20712 0.93148 0.97465 0.99527 1.21083 1.02838 0.98019 1.01515 1.19869 0.92304 0.88207 0.94491 1.83960 1.25766 1.38837 1.65611 1.21828 0.86668 1.15838 1.24472 0.87694 1.26637 1.04554 0.94552 0.96607 1.70204 1.38492 1.16303 1.31369 0.84626 0.74005 0.78774 0.78655 1.17994 1.19956 1.17957 1.20341 0.94779 1.01552 1.04073 1.21399 0.99956 0.93763 0.96191 1.21958 0.98645 0.82488 1.03242 1.23473 1.00191 1.00616 0.96027 1.23494 1.04562 0.96830 0.97565 0.93147 0.91985 0.90618 0.89932 0.95410 0.92675 0.94235 0.87851 0.91690 0.74309 0.82435 0.84988 0.91959 0.87383 0.83261 0.84622 0.87551 0.86080 0.86469 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.19 71.98 0.66 -1.03 16 2 C -0.10 -1.66 2.93 -10.79 -0.03 -1.69 16 3 C -0.14 -3.21 8.06 71.98 0.58 -2.63 16 4 C 0.13 2.24 4.27 86.38 0.37 2.61 16 5 N -0.59 -11.30 2.70 -815.71 -2.21 -13.51 16 6 C 0.70 19.68 6.54 179.05 1.17 20.85 16 7 O -0.60 -21.91 11.50 -4.00 -0.05 -21.96 16 8 N -0.66 -17.35 5.26 -317.04 -1.67 -19.02 16 9 C 0.09 3.03 6.47 38.15 0.25 3.27 16 10 C -0.09 -2.99 9.93 22.38 0.22 -2.77 16 11 C -0.21 -9.33 9.15 22.37 0.20 -9.13 16 12 C 0.10 5.30 6.64 22.59 0.15 5.45 16 13 O -0.23 -14.59 9.76 -22.95 -0.22 -14.81 16 14 C -0.41 -24.27 9.48 67.91 0.64 -23.62 16 15 H 0.11 5.54 5.22 -2.91 -0.02 5.52 16 16 C -0.03 -1.54 5.49 84.83 0.47 -1.07 16 17 N -0.93 -58.17 13.67 21.61 0.30 -57.88 16 18 Si 1.02 43.12 29.55 68.60 2.03 45.15 16 19 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 22 C -0.19 -9.00 9.99 22.38 0.22 -8.78 16 23 C -0.09 -3.87 8.85 22.38 0.20 -3.67 16 24 C 0.04 0.48 6.13 44.99 0.28 0.76 16 25 C -0.17 -1.14 9.51 30.59 0.29 -0.85 16 26 C -0.19 -1.56 10.06 30.60 0.31 -1.25 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 30 H 0.08 1.15 7.52 -2.39 -0.02 1.13 16 31 H 0.03 0.79 6.18 -2.38 -0.01 0.78 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 1.08 8.11 -2.38 -0.02 1.06 16 34 H 0.10 1.15 6.28 -2.39 -0.02 1.13 16 35 H 0.06 1.45 7.34 -2.39 -0.02 1.44 16 36 H 0.42 7.53 6.51 -92.71 -0.60 6.93 16 37 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 38 H 0.13 5.61 5.67 -2.91 -0.02 5.59 16 39 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 40 H 0.11 5.25 8.06 -2.91 -0.02 5.22 16 41 H 0.15 6.29 5.37 -2.91 -0.02 6.28 16 42 H 0.14 1.25 6.39 -2.38 -0.02 1.24 16 43 H 0.11 0.69 6.00 -2.39 -0.01 0.67 16 44 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 45 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.09 0.92 7.97 -2.39 -0.02 0.90 16 Total: -1.00 -78.56 368.32 4.56 -74.00 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.40 Total: 31.57 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 5.98 Total: -23.55 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -3.58 Total: -90.40 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.27 Total: -36.77 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -78.56 4.56 -74.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043558090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.809 kcal (2) G-P(sol) polarization free energy of solvation -78.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds