Wall clock time and date at job start Tue Mar 31 2020 13:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47091 * 2 1 4 4 H 1.09000 * 109.52383 * 54.92429 * 3 2 1 5 5 C 1.53042 * 109.49455 * 174.99996 * 3 2 1 6 6 C 1.53048 * 109.52475 * 181.30991 * 5 3 2 7 7 C 1.53195 * 109.31309 * 298.64182 * 6 5 3 8 8 N 1.46932 * 108.77343 * 54.63300 * 7 6 5 9 9 C 1.34770 * 120.62587 * 126.36913 * 8 7 6 10 10 O 1.21596 * 119.99722 * 174.94056 * 9 8 7 11 11 N 1.34773 * 120.00632 * 354.94717 * 9 8 7 12 12 C 1.39946 * 120.00468 * 184.60081 * 11 9 8 13 13 C 1.38957 * 120.03298 * 144.31902 * 12 11 9 14 14 C 1.38156 * 120.06699 * 180.02562 * 13 12 11 15 15 C 1.38166 * 120.13725 * 359.97438 * 14 13 12 16 16 C 1.38911 * 120.06924 * 0.02562 * 15 14 13 17 17 O 1.35760 * 120.03162 * 179.97438 * 16 15 14 18 18 C 1.34826 * 116.99822 * 354.44114 * 17 16 15 19 19 H 1.07997 * 120.00183 * 5.10623 * 18 17 16 20 20 C 1.38654 * 119.99677 * 185.09913 * 18 17 16 21 21 N 1.31557 * 120.00356 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99958 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47083 * 89.99979 * 22 20 18 24 24 H 1.48501 * 109.46938 * 209.99932 * 22 20 18 25 25 H 1.48500 * 109.47075 * 329.99664 * 22 20 18 26 26 C 1.38708 * 120.03342 * 324.05328 * 12 11 9 27 27 C 1.46924 * 118.73696 * 306.39175 * 8 7 6 28 28 H 1.08999 * 109.47276 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47202 * 300.00290 * 1 2 3 30 30 H 1.09004 * 109.47137 * 60.00241 * 1 2 3 31 31 H 1.09008 * 109.47311 * 239.99745 * 2 1 3 32 32 H 1.09001 * 109.47479 * 120.00152 * 2 1 3 33 33 H 1.08994 * 109.46574 * 61.29867 * 5 3 2 34 34 H 1.09000 * 109.46586 * 301.32139 * 5 3 2 35 35 H 1.09002 * 109.49467 * 58.59237 * 6 5 3 36 36 H 1.09001 * 109.49741 * 178.68609 * 6 5 3 37 37 H 1.08990 * 109.58412 * 174.41787 * 7 6 5 38 38 H 1.08996 * 109.58341 * 294.70821 * 7 6 5 39 39 H 0.97000 * 119.99890 * 4.60762 * 11 9 8 40 40 H 1.07999 * 119.96989 * 0.02562 * 13 12 11 41 41 H 1.08003 * 119.93484 * 180.02562 * 14 13 12 42 42 H 1.08005 * 119.96753 * 179.97438 * 15 14 13 43 43 H 0.96997 * 120.00572 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.06851 * 359.97438 * 26 12 11 45 45 H 1.09003 * 109.58263 * 173.39941 * 27 8 7 46 46 H 1.08995 * 109.59026 * 293.67863 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9828 0.8408 5 6 3.5652 1.4450 0.1257 6 6 4.0734 2.8883 0.1587 7 6 3.6947 3.5887 -1.1501 8 7 2.2445 3.4640 -1.3507 9 6 1.4849 4.5560 -1.5673 10 8 0.3025 4.4331 -1.8231 11 7 2.0357 5.7842 -1.5004 12 6 1.2294 6.9207 -1.6296 13 6 1.5141 8.0630 -0.8913 14 6 0.7183 9.1852 -1.0179 15 6 -0.3623 9.1758 -1.8788 16 6 -0.6522 8.0369 -2.6195 17 8 -1.7145 8.0283 -3.4648 18 6 -2.5143 9.1137 -3.4537 19 1 -2.2513 9.9722 -2.8536 20 6 -3.6745 9.1276 -4.2129 21 7 -4.4547 10.1868 -4.2025 22 14 -4.1297 7.6424 -5.2504 23 1 -4.9631 6.7132 -4.4459 24 1 -4.8948 8.0873 -6.4428 25 1 -2.8930 6.9460 -5.6874 26 6 0.1485 6.9099 -2.4988 27 6 1.6383 2.1263 -1.3103 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 4.0008 0.9261 -0.7280 34 1 3.8546 0.9371 1.0457 35 1 3.6189 3.4149 0.9979 36 1 5.1575 2.8897 0.2717 37 1 3.9662 4.6427 -1.0921 38 1 4.2222 3.1205 -1.9810 39 1 2.9910 5.8804 -1.3628 40 1 2.3584 8.0736 -0.2179 41 1 0.9418 10.0720 -0.4434 42 1 -0.9829 10.0545 -1.9753 43 1 -5.2665 10.1964 -4.7333 44 1 -0.0720 6.0249 -3.0771 45 1 0.5529 2.2154 -1.3583 46 1 1.9942 1.5380 -2.1561 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048516272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:52 Heat of formation + Delta-G solvation = -29.662843 kcal Electronic energy + Delta-G solvation = -26675.355324 eV Core-core repulsion = 22951.723415 eV Total energy + Delta-G solvation = -3723.631908 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.79845 -39.17635 -38.17803 -36.56527 -34.99422 -33.94223 -32.50761 -32.30789 -29.80576 -29.45252 -28.42315 -25.62684 -25.09689 -24.52645 -22.43426 -21.78050 -21.32795 -20.50044 -19.60273 -18.53740 -17.86877 -17.27111 -16.18793 -15.67787 -15.25877 -15.14399 -15.07954 -14.81482 -14.49792 -14.00961 -13.91411 -13.81860 -13.75900 -13.58848 -13.23904 -13.06728 -12.76342 -12.36625 -12.29676 -12.22505 -11.93940 -11.64571 -11.51054 -11.36744 -11.11510 -10.97058 -10.94253 -10.82678 -10.77140 -10.57787 -10.19523 -9.91762 -9.65790 -9.25738 -8.80834 -8.77117 -7.71870 -7.25141 -6.34996 -4.01216 2.05315 2.29300 2.55093 3.26189 3.29171 3.34904 3.50220 3.74899 4.29964 4.32308 4.42051 4.48059 4.57489 4.62444 4.79601 4.95878 4.99106 5.04730 5.11480 5.17834 5.21344 5.25964 5.41950 5.51554 5.56214 5.59926 5.61531 5.66207 5.75022 5.76051 5.78078 5.86836 6.03581 6.08940 6.12222 6.17894 6.27151 6.39437 6.51935 6.76730 6.98574 7.12459 7.18735 7.39103 7.66408 7.87322 7.93508 8.10222 8.63348 9.00944 9.64932 10.72569 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015602 B = 0.003196 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.169721 B = 8758.884679 C =10131.172372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.114 4.114 3 C -0.105 4.105 4 H 0.075 0.925 5 C -0.113 4.113 6 C -0.136 4.136 7 C 0.110 3.890 8 N -0.630 5.630 9 C 0.703 3.297 10 O -0.561 6.561 11 N -0.682 5.682 12 C 0.190 3.810 13 C -0.228 4.228 14 C -0.060 4.060 15 C -0.233 4.233 16 C 0.174 3.826 17 O -0.214 6.214 18 C -0.388 4.388 19 H 0.107 0.893 20 C 0.064 3.936 21 N -0.881 5.881 22 Si 0.904 3.096 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.185 4.185 27 C 0.133 3.867 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.400 0.600 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.134 0.866 43 H 0.279 0.721 44 H 0.134 0.866 45 H 0.097 0.903 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.266 -17.361 9.195 27.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.152 4.152 3 C -0.124 4.124 4 H 0.094 0.906 5 C -0.151 4.151 6 C -0.174 4.174 7 C -0.014 4.014 8 N -0.368 5.368 9 C 0.405 3.595 10 O -0.436 6.436 11 N -0.332 5.332 12 C 0.097 3.903 13 C -0.250 4.250 14 C -0.079 4.079 15 C -0.253 4.253 16 C 0.121 3.879 17 O -0.119 6.119 18 C -0.463 4.463 19 H 0.125 0.875 20 C -0.139 4.139 21 N -0.519 5.519 22 Si 0.729 3.271 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.207 4.207 27 C 0.010 3.990 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.238 0.762 40 H 0.127 0.873 41 H 0.132 0.868 42 H 0.151 0.849 43 H 0.089 0.911 44 H 0.152 0.848 45 H 0.115 0.885 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 18.101 -17.555 8.746 26.689 hybrid contribution 0.276 -0.316 -0.216 0.472 sum 18.377 -17.871 8.530 27.015 Atomic orbital electron populations 1.21848 0.95497 1.01664 1.02552 1.21502 0.96266 0.95399 1.02078 1.21603 0.95788 0.96391 0.98633 0.90627 1.21564 0.95134 0.96240 1.02165 1.21933 1.01150 0.96564 0.97760 1.21635 0.81045 1.00814 0.97857 1.47266 1.07174 1.05947 1.76392 1.15861 0.84962 0.80315 0.78335 1.90995 1.14069 1.84713 1.53851 1.42668 1.10692 1.03583 1.76235 1.16947 0.92649 0.85184 0.95566 1.20306 1.04755 0.94412 1.05484 1.20534 0.93832 0.96700 0.96811 1.21291 1.01444 0.99919 1.02658 1.18872 0.87831 0.92531 0.88702 1.83588 1.33496 1.42239 1.52592 1.20784 1.02488 0.93148 1.29895 0.87542 1.24445 0.94342 0.97964 0.97150 1.69645 1.13480 1.28403 1.40404 0.86202 0.79422 0.82011 0.79453 1.19815 1.20847 1.18291 1.20175 0.98472 0.98415 1.03632 1.21572 1.00266 0.80747 0.96386 0.92749 0.92596 0.92106 0.91823 0.91773 0.91702 0.91651 0.91310 0.90641 0.90591 0.91150 0.76233 0.87334 0.86770 0.84863 0.91116 0.84815 0.88468 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.67 37.15 0.36 -0.91 16 2 C -0.11 -0.79 5.40 -26.73 -0.14 -0.93 16 3 C -0.10 -0.84 2.34 -90.51 -0.21 -1.05 16 4 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.11 -0.71 5.17 -26.68 -0.14 -0.84 16 6 C -0.14 -0.84 6.08 -26.61 -0.16 -1.00 16 7 C 0.11 0.83 6.43 -3.71 -0.02 0.81 16 8 N -0.63 -7.26 2.97 -178.52 -0.53 -7.79 16 9 C 0.70 11.26 8.14 -86.93 -0.71 10.56 16 10 O -0.56 -11.67 13.27 5.28 0.07 -11.60 16 11 N -0.68 -10.05 5.25 -14.24 -0.07 -10.12 16 12 C 0.19 3.53 6.28 -83.71 -0.53 3.00 16 13 C -0.23 -3.86 9.96 -39.35 -0.39 -4.25 16 14 C -0.06 -1.09 10.03 -39.64 -0.40 -1.49 16 15 C -0.23 -5.20 9.17 -39.36 -0.36 -5.56 16 16 C 0.17 4.29 6.64 -39.13 -0.26 4.03 16 17 O -0.21 -6.02 8.58 0.03 0.00 -6.02 16 18 C -0.39 -11.33 9.95 30.89 0.31 -11.02 16 19 H 0.11 3.14 5.43 -52.49 -0.29 2.85 16 20 C 0.06 1.86 5.49 -17.52 -0.10 1.76 16 21 N -0.88 -26.11 13.96 55.48 0.77 -25.34 16 22 Si 0.90 22.79 28.62 -169.99 -4.86 17.92 16 23 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.26 -6.63 7.11 56.52 0.40 -6.23 16 26 C -0.19 -4.18 8.63 -39.21 -0.34 -4.52 16 27 C 0.13 1.40 5.31 -3.73 -0.02 1.38 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.55 6.70 -51.93 -0.35 0.20 16 31 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.49 5.56 -51.93 -0.29 0.20 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.40 4.28 6.28 -40.82 -0.26 4.02 16 40 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 41 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 42 H 0.13 3.08 5.63 -52.48 -0.30 2.78 16 43 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.13 3.21 6.29 -52.49 -0.33 2.88 16 45 H 0.10 1.26 5.75 -51.93 -0.30 0.96 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -33.67 364.31 -8.98 -42.65 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.73 Total: 4.86 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -3.11 Total: -10.05 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.17 Total: -43.26 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.07 Total: -17.61 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.86 Total: 17.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.67 -8.98 -42.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048516272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.982 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds