Wall clock time and date at job start Tue Mar 31 2020 12:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47039 * 2 1 4 4 C 1.53000 * 109.47335 * 120.00176 * 2 1 3 5 5 H 1.09003 * 109.46901 * 305.44544 * 4 2 1 6 6 N 1.46500 * 109.47010 * 65.43869 * 4 2 1 7 7 C 1.34768 * 120.00256 * 275.00203 * 6 4 2 8 8 O 1.21549 * 120.00262 * 359.97438 * 7 6 4 9 9 C 1.47852 * 120.00251 * 180.02562 * 7 6 4 10 10 C 1.39580 * 120.13996 * 359.71526 * 9 7 6 11 11 C 1.37960 * 119.84789 * 179.79087 * 10 9 7 12 12 C 1.38352 * 120.14500 * 0.49412 * 11 10 9 13 13 C 1.38358 * 120.29576 * 359.74153 * 12 11 10 14 14 C 1.37956 * 120.14578 * 0.02562 * 13 12 11 15 15 C 1.50694 * 109.46903 * 185.43976 * 4 2 1 16 16 O 1.21275 * 120.00291 * 275.26663 * 15 4 2 17 17 N 1.34782 * 119.99790 * 95.27356 * 15 4 2 18 18 C 1.46493 * 120.00055 * 6.26536 * 17 15 4 19 19 C 1.46501 * 120.00078 * 186.27356 * 17 15 4 20 20 C 1.50701 * 109.46807 * 269.99865 * 19 17 15 21 21 H 1.07999 * 119.99984 * 359.97438 * 20 19 17 22 22 C 1.37880 * 119.99799 * 180.02562 * 20 19 17 23 23 N 1.31513 * 120.00030 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99889 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46847 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47182 * 119.99872 * 24 22 20 27 27 H 1.48494 * 109.46794 * 239.99744 * 24 22 20 28 28 H 1.09001 * 109.46932 * 299.99894 * 1 2 3 29 29 H 1.08998 * 109.47227 * 59.99852 * 1 2 3 30 30 H 1.08998 * 109.47029 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46932 * 240.00106 * 2 1 3 32 32 H 1.09000 * 109.47159 * 175.21380 * 3 2 1 33 33 H 1.09004 * 109.47095 * 295.21293 * 3 2 1 34 34 H 1.09000 * 109.47177 * 55.21210 * 3 2 1 35 35 H 0.97005 * 119.99422 * 94.99967 * 6 4 2 36 36 H 1.07998 * 120.07360 * 0.02562 * 10 9 7 37 37 H 1.08003 * 119.92447 * 180.23286 * 11 10 9 38 38 H 1.08005 * 119.85198 * 179.72257 * 12 11 10 39 39 H 1.07995 * 119.93060 * 180.02562 * 13 12 11 40 40 H 1.08003 * 120.07685 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.48075 * 275.10465 * 18 17 15 42 42 H 1.09003 * 109.47503 * 35.10558 * 18 17 15 43 43 H 1.09007 * 109.47232 * 155.09990 * 18 17 15 44 44 H 1.09004 * 109.46951 * 29.99377 * 19 17 15 45 45 H 1.08993 * 109.47360 * 149.99828 * 19 17 15 46 46 H 0.97003 * 120.00092 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5993 -0.2668 2.1365 6 7 1.6616 -2.1351 1.1855 7 6 0.4452 -2.5270 1.6134 8 8 -0.3377 -1.7076 2.0527 9 6 0.0634 -3.9540 1.5496 10 6 0.9583 -4.8969 1.0412 11 6 0.5974 -6.2274 0.9885 12 6 -0.6521 -6.6264 1.4287 13 6 -1.5456 -5.6961 1.9292 14 6 -1.1956 -4.3632 1.9919 15 6 3.5410 -0.6056 1.3183 16 8 4.2383 -1.3934 0.7150 17 7 4.1084 0.3732 2.0508 18 6 3.2743 1.2387 2.8882 19 6 5.5593 0.5717 2.0093 20 6 6.2113 -0.2627 3.0816 21 1 5.6054 -0.8789 3.7294 22 6 7.5812 -0.2387 3.2363 23 7 8.3189 0.5121 2.4478 24 14 8.3893 -1.2725 4.5659 25 1 7.3468 -2.0214 5.3125 26 1 9.3359 -2.2308 3.9409 27 1 9.1273 -0.3865 5.5015 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1266 1.4437 0.0857 33 1 1.7483 1.9310 -0.9298 34 1 1.6083 1.9805 0.8440 35 1 2.2865 -2.7891 0.8352 36 1 1.9324 -4.5860 0.6935 37 1 1.2903 -6.9585 0.5988 38 1 -0.9313 -7.6686 1.3811 39 1 -2.5192 -6.0141 2.2716 40 1 -1.8941 -3.6379 2.3825 41 1 2.8817 2.0581 2.2861 42 1 2.4465 0.6598 3.2977 43 1 3.8741 1.6423 3.7041 44 1 5.9395 0.2706 1.0331 45 1 5.7871 1.6240 2.1791 46 1 9.2826 0.5293 2.5568 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060617412.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:05 Heat of formation + Delta-G solvation = -45.054373 kcal Electronic energy + Delta-G solvation = -27272.049900 eV Core-core repulsion = 23547.750565 eV Total energy + Delta-G solvation = -3724.299335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.67389 -39.40688 -38.18446 -35.73780 -35.04378 -33.51489 -32.59459 -31.27385 -31.11204 -28.51203 -26.99679 -26.87771 -25.63311 -23.82443 -22.86404 -22.52589 -20.70594 -20.21275 -19.08953 -17.82449 -16.80655 -16.61426 -16.27478 -15.80321 -15.63147 -15.35889 -15.00711 -14.65391 -14.48155 -14.32130 -13.90543 -13.68355 -13.33560 -13.15188 -12.69210 -12.62926 -12.47670 -12.27603 -12.11934 -11.96504 -11.87052 -11.74688 -11.37911 -11.30471 -11.24688 -10.92450 -10.89069 -10.68084 -10.57542 -10.20227 -9.92643 -9.64985 -9.26520 -9.21436 -9.13484 -8.78566 -8.47331 -7.73037 -6.08093 -4.12609 0.67640 1.14632 2.77704 2.92579 3.27668 3.34634 3.36270 3.40088 3.72155 3.89546 4.42013 4.55332 4.62172 4.71595 4.87206 4.92583 4.97780 5.02890 5.15301 5.25968 5.27100 5.35430 5.42290 5.59040 5.69149 5.71777 5.75345 5.78376 5.90027 6.00929 6.03317 6.10392 6.16006 6.19246 6.20612 6.20844 6.34494 6.44799 6.50515 6.65452 6.96457 7.34606 7.43829 7.53931 7.87799 8.16986 8.18439 8.29990 8.80666 8.96394 9.52513 11.00019 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012384 B = 0.003826 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.390624 B = 7315.895236 C = 8889.222270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 C -0.154 4.154 4 C 0.126 3.874 5 H 0.108 0.892 6 N -0.705 5.705 7 C 0.559 3.441 8 O -0.535 6.535 9 C -0.132 4.132 10 C -0.084 4.084 11 C -0.127 4.127 12 C -0.097 4.097 13 C -0.131 4.131 14 C -0.061 4.061 15 C 0.505 3.495 16 O -0.538 6.538 17 N -0.592 5.592 18 C 0.074 3.926 19 C 0.246 3.754 20 C -0.525 4.525 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.898 3.102 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.408 0.592 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.136 0.864 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.035 0.965 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.061 -7.051 -3.559 20.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 C -0.212 4.212 4 C 0.018 3.982 5 H 0.126 0.874 6 N -0.358 5.358 7 C 0.347 3.653 8 O -0.413 6.413 9 C -0.135 4.135 10 C -0.103 4.103 11 C -0.145 4.145 12 C -0.116 4.116 13 C -0.149 4.149 14 C -0.080 4.080 15 C 0.290 3.710 16 O -0.415 6.415 17 N -0.324 5.324 18 C -0.070 4.070 19 C 0.127 3.873 20 C -0.564 4.564 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.726 3.274 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.246 0.754 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.154 0.846 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.999 -6.786 -3.583 20.491 hybrid contribution 0.965 -0.863 0.639 1.444 sum -18.034 -7.649 -2.944 19.809 Atomic orbital electron populations 1.21861 0.93764 1.02222 1.01412 1.21385 0.96764 0.96468 0.96900 1.22003 1.02159 0.94950 1.02054 1.21200 0.93713 0.82296 1.01019 0.87423 1.45726 1.16478 1.09205 1.64354 1.18196 0.81596 0.87982 0.77524 1.90757 1.50798 1.53746 1.46046 1.19979 0.96210 0.92999 1.04281 1.21463 0.98942 0.93237 0.96653 1.21143 0.96936 0.95792 1.00641 1.21379 0.93701 0.99771 0.96703 1.21153 1.00109 0.92900 1.00771 1.21284 0.94915 0.96184 0.95583 1.20138 0.88736 0.81815 0.80296 1.90666 1.63919 1.40899 1.46032 1.48135 1.10271 1.31378 1.42572 1.21873 0.95311 0.94279 0.95516 1.19342 0.72313 0.96986 0.98665 1.21449 0.91943 1.26563 1.16439 0.92408 1.24931 0.97125 0.95611 0.96414 1.69937 1.05721 1.39483 1.38233 0.86443 0.79351 0.80150 0.81493 1.19826 1.20860 1.20933 0.91967 0.93315 0.92547 0.90544 0.91556 0.92258 0.92019 0.75400 0.85238 0.85300 0.85661 0.85405 0.84616 0.92928 0.92388 0.90302 0.93908 0.94718 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 7.80 37.16 0.29 -1.46 16 2 C -0.10 -1.33 2.71 -90.62 -0.25 -1.58 16 3 C -0.15 -2.02 7.71 37.16 0.29 -1.74 16 4 C 0.13 2.01 1.88 -69.08 -0.13 1.88 16 5 H 0.11 1.71 5.18 -51.93 -0.27 1.44 16 6 N -0.70 -10.60 4.97 -55.88 -0.28 -10.87 16 7 C 0.56 8.15 6.36 -12.33 -0.08 8.07 16 8 O -0.54 -8.70 13.49 5.32 0.07 -8.63 16 9 C -0.13 -1.63 5.87 -104.96 -0.62 -2.25 16 10 C -0.08 -0.92 9.54 -39.18 -0.37 -1.30 16 11 C -0.13 -1.16 10.03 -39.64 -0.40 -1.56 16 12 C -0.10 -0.80 10.04 -39.50 -0.40 -1.20 16 13 C -0.13 -1.15 10.03 -39.64 -0.40 -1.55 16 14 C -0.06 -0.67 9.60 -39.19 -0.38 -1.04 16 15 C 0.51 10.17 5.56 -10.99 -0.06 10.11 16 16 O -0.54 -12.76 15.87 5.56 0.09 -12.67 16 17 N -0.59 -12.21 2.18 -182.96 -0.40 -12.61 16 18 C 0.07 1.18 9.37 59.84 0.56 1.74 16 19 C 0.25 6.26 5.09 -5.19 -0.03 6.24 16 20 C -0.53 -14.73 9.39 -34.44 -0.32 -15.05 16 21 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 24 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H 0.06 0.83 7.87 -51.93 -0.41 0.42 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.78 5.64 -51.93 -0.29 0.49 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.03 6.24 -51.93 -0.32 0.70 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.73 6.83 -51.93 -0.35 0.38 16 35 H 0.41 6.01 5.97 -40.82 -0.24 5.77 16 36 H 0.13 1.34 6.41 -52.49 -0.34 1.01 16 37 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.14 1.45 7.65 -52.48 -0.40 1.05 16 41 H 0.05 0.71 5.93 -51.93 -0.31 0.40 16 42 H 0.06 0.84 6.21 -51.93 -0.32 0.52 16 43 H 0.08 1.28 8.03 -51.93 -0.42 0.87 16 44 H 0.04 1.22 7.52 -51.93 -0.39 0.83 16 45 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 46 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -33.01 369.35 -8.19 -41.20 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.57 Total: 5.81 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -2.38 Total: 0.96 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.06 Total: -48.99 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: 0.16 Total: -21.30 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.01 -8.19 -41.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060617412.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.854 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds