Wall clock time and date at job start Tue Mar 31 2020 12:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47137 * 2 1 4 4 C 1.53006 * 109.46912 * 119.99548 * 2 1 3 5 5 C 1.50698 * 109.46952 * 174.99866 * 4 2 1 6 6 O 1.21277 * 120.00175 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99484 * 180.02562 * 5 4 2 8 8 C 1.46502 * 119.99661 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.46922 * 324.99181 * 8 7 5 10 10 C 1.50702 * 109.46925 * 204.99893 * 8 7 5 11 11 O 1.21290 * 120.00420 * 333.81481 * 10 8 7 12 12 N 1.34779 * 120.00063 * 153.81428 * 10 8 7 13 13 C 1.46498 * 120.00085 * 5.43754 * 12 10 8 14 14 C 1.37104 * 120.00217 * 185.44726 * 12 10 8 15 15 H 1.07999 * 119.99511 * 5.92258 * 14 12 10 16 16 C 1.38946 * 120.00104 * 185.92979 * 14 12 10 17 17 N 1.31416 * 119.99853 * 6.15683 * 16 14 12 18 18 Si 1.86798 * 119.99979 * 186.15055 * 16 14 12 19 19 H 1.48498 * 109.47152 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47049 * 120.00382 * 18 16 14 21 21 H 1.48505 * 109.47106 * 240.00198 * 18 16 14 22 22 C 1.50698 * 109.47613 * 84.99986 * 8 7 5 23 23 C 1.38232 * 119.99993 * 223.33169 * 22 8 7 24 24 C 1.38228 * 119.99925 * 179.97438 * 23 22 8 25 25 C 1.38237 * 120.00072 * 359.95678 * 24 23 22 26 26 C 1.38227 * 119.99891 * 359.97438 * 25 24 23 27 27 C 1.38235 * 119.99683 * 43.30733 * 22 8 7 28 28 H 1.09002 * 109.47263 * 300.00353 * 1 2 3 29 29 H 1.09003 * 109.46633 * 60.00204 * 1 2 3 30 30 H 1.09002 * 109.47316 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47263 * 239.99647 * 2 1 3 32 32 H 1.08992 * 109.47299 * 59.99631 * 3 2 1 33 33 H 1.09010 * 109.46898 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47192 * 299.99453 * 3 2 1 35 35 H 1.09006 * 109.46775 * 55.00070 * 4 2 1 36 36 H 1.09003 * 109.47059 * 295.00400 * 4 2 1 37 37 H 0.97003 * 120.00635 * 0.02562 * 7 5 4 38 38 H 1.08998 * 109.46814 * 1.60525 * 13 12 10 39 39 H 1.09002 * 109.46764 * 121.59744 * 13 12 10 40 40 H 1.08999 * 109.47966 * 241.60199 * 13 12 10 41 41 H 0.97002 * 119.99797 * 180.02562 * 17 16 14 42 42 H 1.08005 * 120.00081 * 359.97438 * 23 22 8 43 43 H 1.07998 * 120.00182 * 179.97438 * 24 23 22 44 44 H 1.08003 * 119.99975 * 179.71796 * 25 24 23 45 45 H 1.08006 * 119.99887 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.00067 * 0.02562 * 27 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5419 -0.8294 1.1890 6 8 4.1450 -0.3741 0.2405 7 7 4.2147 -1.4321 2.1892 8 6 5.6748 -1.5368 2.1309 9 1 5.9877 -1.6799 1.0966 10 6 6.1277 -2.7112 2.9596 11 8 5.4484 -3.0967 3.8875 12 7 7.2878 -3.3331 2.6698 13 6 8.1661 -2.7965 1.6273 14 6 7.6458 -4.4681 3.3505 15 1 6.9571 -4.9179 4.0503 16 6 8.8947 -5.0396 3.1401 17 7 9.7778 -4.4283 2.3828 18 14 9.3186 -6.6765 3.9339 19 1 8.1614 -7.1535 4.7331 20 1 9.6354 -7.6714 2.8780 21 1 10.4962 -6.5056 4.8224 22 6 6.2912 -0.2726 2.6720 23 6 7.3618 0.3089 2.0188 24 6 7.9268 1.4688 2.5149 25 6 7.4208 2.0477 3.6637 26 6 6.3494 1.4669 4.3161 27 6 5.7858 0.3057 3.8213 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6053 -1.7198 1.2953 36 1 1.7515 -0.1582 2.1371 37 1 3.7323 -1.7966 2.9478 38 1 7.7320 -1.8828 1.2215 39 1 9.1442 -2.5755 2.0546 40 1 8.2755 -3.5319 0.8302 41 1 10.6496 -4.8275 2.2356 42 1 7.7567 -0.1430 1.1209 43 1 8.7635 1.9229 2.0049 44 1 7.8652 2.9514 4.0539 45 1 5.9543 1.9190 5.2139 46 1 4.9494 -0.1487 4.3316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066644056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:59 Heat of formation + Delta-G solvation = -39.895185 kcal Electronic energy + Delta-G solvation = -27536.485672 eV Core-core repulsion = 23812.410056 eV Total energy + Delta-G solvation = -3724.075616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.24404 -38.90122 -38.01807 -35.72150 -34.98358 -34.09417 -31.93751 -31.02681 -30.55641 -28.46743 -27.12260 -26.85817 -25.90086 -24.07394 -22.33700 -21.64774 -20.70194 -19.72445 -19.09910 -17.29666 -16.93309 -16.87608 -15.92616 -15.57556 -15.37956 -15.06563 -14.58825 -14.43212 -14.12248 -14.03916 -13.86760 -13.63534 -13.35129 -13.10946 -12.78071 -12.43072 -12.30301 -12.21708 -12.00046 -11.84621 -11.69330 -11.54416 -11.13927 -11.07404 -11.02501 -10.90267 -10.79639 -10.70577 -10.59277 -10.37939 -10.17188 -9.51634 -9.17013 -9.11784 -8.66818 -8.56075 -8.13469 -7.95157 -6.28776 -3.90859 1.63514 1.74361 2.88307 3.08503 3.20167 3.26087 3.37329 3.74381 4.03705 4.16315 4.73382 4.80598 4.88473 4.93572 5.03379 5.15878 5.22022 5.28774 5.33802 5.41751 5.46923 5.55992 5.59793 5.65693 5.66567 5.71311 5.84509 5.86005 5.92194 5.94678 6.09672 6.21371 6.32614 6.34575 6.34659 6.45411 6.69864 6.76245 6.79629 6.97119 6.97876 7.30461 7.36881 7.52656 7.82594 7.95616 8.37769 8.51386 9.06774 9.32755 9.82018 10.60871 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012998 B = 0.004152 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.673727 B = 6742.430430 C = 8005.539685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.153 4.153 4 C -0.136 4.136 5 C 0.513 3.487 6 O -0.540 6.540 7 N -0.706 5.706 8 C 0.174 3.826 9 H 0.105 0.895 10 C 0.434 3.566 11 O -0.593 6.593 12 N -0.431 5.431 13 C 0.096 3.904 14 C -0.300 4.300 15 H 0.106 0.894 16 C 0.028 3.972 17 N -0.882 5.882 18 Si 0.933 3.067 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.076 4.076 23 C -0.100 4.100 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.126 4.126 27 C -0.096 4.096 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.408 0.592 38 H 0.030 0.970 39 H 0.099 0.901 40 H 0.052 0.948 41 H 0.267 0.733 42 H 0.126 0.874 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.872 10.829 -2.641 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 C -0.210 4.210 4 C -0.176 4.176 5 C 0.300 3.700 6 O -0.418 6.418 7 N -0.358 5.358 8 C 0.066 3.934 9 H 0.123 0.877 10 C 0.221 3.779 11 O -0.480 6.480 12 N -0.147 5.147 13 C -0.047 4.047 14 C -0.428 4.428 15 H 0.124 0.876 16 C -0.174 4.174 17 N -0.522 5.522 18 Si 0.759 3.241 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.206 1.206 22 C -0.078 4.078 23 C -0.119 4.119 24 C -0.139 4.139 25 C -0.143 4.143 26 C -0.144 4.144 27 C -0.115 4.115 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.245 0.755 38 H 0.048 0.952 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.144 0.856 43 H 0.138 0.862 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.535 10.872 -2.942 14.757 hybrid contribution 0.296 -0.990 0.682 1.238 sum -9.239 9.881 -2.260 13.715 Atomic orbital electron populations 1.21865 0.95190 1.01641 1.01771 1.20849 0.94791 0.96930 0.97311 1.21956 1.03437 0.94926 1.00675 1.21764 0.92091 1.02994 1.00790 1.20672 0.90035 0.77314 0.81987 1.90641 1.70375 1.47415 1.33325 1.45825 1.06525 1.59228 1.24239 1.19568 0.80629 0.92219 1.01015 0.87702 1.19471 0.84595 0.85905 0.87932 1.90487 1.56713 1.68368 1.32409 1.43638 1.16272 1.23064 1.31705 1.22209 0.95912 0.95453 0.91165 1.19887 1.00290 1.00640 1.21987 0.87593 1.25360 0.95185 0.99898 0.96959 1.70095 1.06440 1.37741 1.37961 0.85747 0.78654 0.80894 0.78761 1.19179 1.20548 1.20599 1.19917 0.96496 0.95604 0.95736 1.21106 0.95568 0.95402 0.99783 1.21046 0.99992 0.96127 0.96777 1.21062 0.97079 1.00038 0.96151 1.21040 0.97139 0.96327 0.99880 1.20913 0.99926 0.95347 0.95273 0.92732 0.92557 0.92713 0.90416 0.93536 0.90460 0.93210 0.88923 0.89023 0.75534 0.95208 0.88306 0.92925 0.92232 0.85607 0.86195 0.86553 0.86474 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 2 C -0.08 -0.88 2.57 -90.62 -0.23 -1.11 16 3 C -0.15 -1.76 8.93 37.16 0.33 -1.43 16 4 C -0.14 -1.54 5.17 -27.88 -0.14 -1.69 16 5 C 0.51 7.98 7.50 -10.99 -0.08 7.90 16 6 O -0.54 -9.88 13.63 5.56 0.08 -9.80 16 7 N -0.71 -11.87 4.42 -56.07 -0.25 -12.11 16 8 C 0.17 3.41 1.85 -70.23 -0.13 3.28 16 9 H 0.11 2.12 5.86 -51.93 -0.30 1.81 16 10 C 0.43 10.35 6.76 -10.98 -0.07 10.27 16 11 O -0.59 -15.42 15.63 5.55 0.09 -15.34 16 12 N -0.43 -10.96 3.03 -122.19 -0.37 -11.33 16 13 C 0.10 2.18 8.60 59.85 0.51 2.70 16 14 C -0.30 -8.23 9.55 -14.93 -0.14 -8.37 16 15 H 0.11 3.03 7.21 -52.49 -0.38 2.65 16 16 C 0.03 0.73 5.42 -17.47 -0.09 0.64 16 17 N -0.88 -22.77 9.57 55.50 0.53 -22.24 16 18 Si 0.93 20.44 29.56 -169.99 -5.02 15.42 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 C -0.08 -1.39 4.81 -104.63 -0.50 -1.90 16 23 C -0.10 -1.72 8.88 -39.59 -0.35 -2.07 16 24 C -0.12 -1.82 10.05 -39.59 -0.40 -2.22 16 25 C -0.13 -1.77 10.05 -39.59 -0.40 -2.17 16 26 C -0.13 -1.88 10.05 -39.59 -0.40 -2.28 16 27 C -0.10 -1.65 9.29 -39.58 -0.37 -2.02 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.96 7.96 -51.93 -0.41 0.55 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 1.11 5.95 -51.92 -0.31 0.80 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.41 6.54 7.80 -40.82 -0.32 6.22 16 38 H 0.03 0.59 2.76 -51.93 -0.14 0.44 16 39 H 0.10 2.42 6.34 -51.93 -0.33 2.09 16 40 H 0.05 1.24 7.70 -51.93 -0.40 0.84 16 41 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 42 H 0.13 2.06 6.30 -52.48 -0.33 1.73 16 43 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 45 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 46 H 0.12 1.99 7.82 -52.49 -0.41 1.58 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -30.78 371.00 -8.19 -38.96 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -6.70 Total: 12.23 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -2.13 Total: -1.37 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.09 Total: -45.69 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: 0.16 Total: -25.14 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.78 -8.19 -38.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066644056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.934 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds