Wall clock time and date at job start Tue Mar 31 2020 12:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47137 * 2 1 4 4 C 1.53006 * 109.46912 * 119.99548 * 2 1 3 5 5 C 1.50698 * 109.46952 * 174.99866 * 4 2 1 6 6 O 1.21277 * 120.00175 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99484 * 180.02562 * 5 4 2 8 8 C 1.46502 * 119.99661 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.46922 * 324.99181 * 8 7 5 10 10 C 1.50702 * 109.46925 * 204.99893 * 8 7 5 11 11 O 1.21290 * 120.00420 * 333.81481 * 10 8 7 12 12 N 1.34779 * 120.00063 * 153.81428 * 10 8 7 13 13 C 1.46498 * 120.00085 * 5.43754 * 12 10 8 14 14 C 1.37104 * 120.00217 * 185.44726 * 12 10 8 15 15 H 1.07999 * 119.99511 * 5.92258 * 14 12 10 16 16 C 1.38946 * 120.00104 * 185.92979 * 14 12 10 17 17 N 1.31416 * 119.99853 * 6.15683 * 16 14 12 18 18 Si 1.86798 * 119.99979 * 186.15055 * 16 14 12 19 19 H 1.48498 * 109.47152 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47049 * 120.00382 * 18 16 14 21 21 H 1.48505 * 109.47106 * 240.00198 * 18 16 14 22 22 C 1.50698 * 109.47613 * 84.99986 * 8 7 5 23 23 C 1.38232 * 119.99993 * 223.33169 * 22 8 7 24 24 C 1.38228 * 119.99925 * 179.97438 * 23 22 8 25 25 C 1.38237 * 120.00072 * 359.95678 * 24 23 22 26 26 C 1.38227 * 119.99891 * 359.97438 * 25 24 23 27 27 C 1.38235 * 119.99683 * 43.30733 * 22 8 7 28 28 H 1.09002 * 109.47263 * 300.00353 * 1 2 3 29 29 H 1.09003 * 109.46633 * 60.00204 * 1 2 3 30 30 H 1.09002 * 109.47316 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47263 * 239.99647 * 2 1 3 32 32 H 1.08992 * 109.47299 * 59.99631 * 3 2 1 33 33 H 1.09010 * 109.46898 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47192 * 299.99453 * 3 2 1 35 35 H 1.09006 * 109.46775 * 55.00070 * 4 2 1 36 36 H 1.09003 * 109.47059 * 295.00400 * 4 2 1 37 37 H 0.97003 * 120.00635 * 0.02562 * 7 5 4 38 38 H 1.08998 * 109.46814 * 1.60525 * 13 12 10 39 39 H 1.09002 * 109.46764 * 121.59744 * 13 12 10 40 40 H 1.08999 * 109.47966 * 241.60199 * 13 12 10 41 41 H 0.97002 * 119.99797 * 180.02562 * 17 16 14 42 42 H 1.08005 * 120.00081 * 359.97438 * 23 22 8 43 43 H 1.07998 * 120.00182 * 179.97438 * 24 23 22 44 44 H 1.08003 * 119.99975 * 179.71796 * 25 24 23 45 45 H 1.08006 * 119.99887 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.00067 * 0.02562 * 27 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5419 -0.8294 1.1890 6 8 4.1450 -0.3741 0.2405 7 7 4.2147 -1.4321 2.1892 8 6 5.6748 -1.5368 2.1309 9 1 5.9877 -1.6799 1.0966 10 6 6.1277 -2.7112 2.9596 11 8 5.4484 -3.0967 3.8875 12 7 7.2878 -3.3331 2.6698 13 6 8.1661 -2.7965 1.6273 14 6 7.6458 -4.4681 3.3505 15 1 6.9571 -4.9179 4.0503 16 6 8.8947 -5.0396 3.1401 17 7 9.7778 -4.4283 2.3828 18 14 9.3186 -6.6765 3.9339 19 1 8.1614 -7.1535 4.7331 20 1 9.6354 -7.6714 2.8780 21 1 10.4962 -6.5056 4.8224 22 6 6.2912 -0.2726 2.6720 23 6 7.3618 0.3089 2.0188 24 6 7.9268 1.4688 2.5149 25 6 7.4208 2.0477 3.6637 26 6 6.3494 1.4669 4.3161 27 6 5.7858 0.3057 3.8213 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6053 -1.7198 1.2953 36 1 1.7515 -0.1582 2.1371 37 1 3.7323 -1.7966 2.9478 38 1 7.7320 -1.8828 1.2215 39 1 9.1442 -2.5755 2.0546 40 1 8.2755 -3.5319 0.8302 41 1 10.6496 -4.8275 2.2356 42 1 7.7567 -0.1430 1.1209 43 1 8.7635 1.9229 2.0049 44 1 7.8652 2.9514 4.0539 45 1 5.9543 1.9190 5.2139 46 1 4.9494 -0.1487 4.3316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066644056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:58 Heat of formation + Delta-G solvation = -57.561599 kcal Electronic energy + Delta-G solvation = -27537.251745 eV Core-core repulsion = 23812.410056 eV Total energy + Delta-G solvation = -3724.841689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69803 -40.27912 -39.56365 -37.04329 -36.54219 -35.57725 -33.78655 -32.46395 -31.78532 -29.58723 -28.60407 -27.91586 -27.51520 -25.89157 -23.58318 -22.95904 -21.94274 -20.92270 -20.60777 -19.07942 -18.57744 -18.17709 -17.42923 -17.11521 -16.66378 -16.33441 -16.21780 -15.84925 -15.66804 -15.55164 -15.15406 -14.71338 -14.65300 -14.34944 -14.31629 -13.82440 -13.66626 -13.44346 -13.30384 -13.21595 -13.00276 -12.83932 -12.76507 -12.71827 -12.36697 -12.13103 -12.11766 -12.03564 -11.81155 -11.73098 -11.55523 -11.12812 -10.79872 -10.76099 -10.14327 -9.94864 -9.80544 -9.58312 -8.25833 -5.98191 0.37217 0.50738 1.32390 1.39684 1.53607 1.63543 1.85373 2.06339 2.29875 2.79611 3.07336 3.14226 3.69135 3.83651 3.86976 3.88588 3.94476 4.05599 4.15013 4.23551 4.24940 4.42094 4.51664 4.63525 4.68568 4.72231 4.74270 4.77746 4.88007 5.03095 5.04766 5.07212 5.10835 5.14662 5.28288 5.31487 5.38051 5.48343 5.50494 5.55024 5.56646 5.59354 5.66829 5.95707 6.10501 6.37630 6.55349 7.06383 7.23632 7.37627 7.86689 8.61989 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012998 B = 0.004152 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.673727 B = 6742.430430 C = 8005.539685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 C -0.150 4.150 4 C -0.129 4.129 5 C 0.510 3.490 6 O -0.570 6.570 7 N -0.706 5.706 8 C 0.189 3.811 9 H 0.092 0.908 10 C 0.433 3.567 11 O -0.621 6.621 12 N -0.448 5.448 13 C 0.112 3.888 14 C -0.341 4.341 15 H 0.083 0.917 16 C -0.004 4.004 17 N -0.894 5.894 18 Si 0.997 3.003 19 H -0.272 1.272 20 H -0.268 1.268 21 H -0.271 1.271 22 C -0.101 4.101 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.119 4.119 26 C -0.126 4.126 27 C -0.114 4.114 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.412 0.588 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.273 0.727 42 H 0.123 0.877 43 H 0.148 0.852 44 H 0.154 0.846 45 H 0.147 0.853 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.404 12.210 -2.060 16.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.099 4.099 3 C -0.207 4.207 4 C -0.169 4.169 5 C 0.299 3.701 6 O -0.449 6.449 7 N -0.359 5.359 8 C 0.080 3.920 9 H 0.110 0.890 10 C 0.221 3.779 11 O -0.509 6.509 12 N -0.165 5.165 13 C -0.031 4.031 14 C -0.469 4.469 15 H 0.101 0.899 16 C -0.205 4.205 17 N -0.533 5.533 18 Si 0.820 3.180 19 H -0.197 1.197 20 H -0.193 1.193 21 H -0.196 1.196 22 C -0.103 4.103 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.137 4.137 26 C -0.144 4.144 27 C -0.133 4.133 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.249 0.751 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.141 0.859 43 H 0.166 0.834 44 H 0.172 0.828 45 H 0.165 0.835 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.073 12.271 -2.380 16.053 hybrid contribution 0.468 -1.324 0.500 1.491 sum -9.605 10.947 -1.880 14.684 Atomic orbital electron populations 1.21808 0.92757 1.02521 1.02710 1.20854 0.96676 0.96132 0.96203 1.21907 1.01287 0.95742 1.01779 1.21851 0.88395 1.04590 1.02041 1.21487 0.91719 0.76058 0.80849 1.90630 1.71415 1.48509 1.34353 1.45869 1.05388 1.59702 1.24912 1.19218 0.82448 0.91208 0.99108 0.89001 1.20224 0.83717 0.86305 0.87681 1.90444 1.57349 1.69382 1.33695 1.43847 1.17246 1.23129 1.32270 1.22015 0.95086 0.95966 0.90029 1.19862 1.01064 1.02445 1.23485 0.89886 1.26137 0.94473 1.02785 0.97102 1.70194 1.06637 1.38675 1.37833 0.84823 0.78191 0.76911 0.78105 1.19687 1.19316 1.19625 1.19910 0.97695 0.95603 0.97046 1.21257 0.95779 0.96756 1.00161 1.21425 1.00375 0.95173 0.97130 1.21528 0.96204 1.00753 0.95232 1.21422 0.97001 0.95311 1.00649 1.21045 1.00434 0.96563 0.95215 0.91505 0.91929 0.91894 0.92364 0.92244 0.93673 0.92307 0.87059 0.86719 0.75123 0.92547 0.89892 0.94319 0.91632 0.85901 0.83449 0.82838 0.83547 0.86640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.19 71.98 0.66 -1.38 16 2 C -0.08 -1.65 2.57 -10.79 -0.03 -1.68 16 3 C -0.15 -3.33 8.93 71.98 0.64 -2.68 16 4 C -0.13 -2.75 5.17 29.85 0.15 -2.59 16 5 C 0.51 15.98 7.50 87.66 0.66 16.64 16 6 O -0.57 -21.43 13.63 -3.02 -0.04 -21.47 16 7 N -0.71 -24.27 4.42 -449.69 -1.99 -26.26 16 8 C 0.19 7.67 1.85 43.50 0.08 7.75 16 9 H 0.09 3.90 5.86 -2.39 -0.01 3.88 16 10 C 0.43 21.46 6.76 87.66 0.59 22.05 16 11 O -0.62 -33.56 15.63 -3.06 -0.05 -33.61 16 12 N -0.45 -23.76 3.03 -658.89 -1.99 -25.75 16 13 C 0.11 5.29 8.60 127.77 1.10 6.39 16 14 C -0.34 -19.41 9.55 84.04 0.80 -18.60 16 15 H 0.08 4.99 7.21 -2.91 -0.02 4.97 16 16 C 0.00 -0.20 5.42 84.92 0.46 0.26 16 17 N -0.89 -46.68 9.57 21.66 0.21 -46.47 16 18 Si 1.00 42.16 29.56 68.60 2.03 44.19 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 22 C -0.10 -3.76 4.81 -19.87 -0.10 -3.86 16 23 C -0.12 -4.15 8.88 22.27 0.20 -3.96 16 24 C -0.12 -3.46 10.05 22.27 0.22 -3.24 16 25 C -0.12 -3.02 10.05 22.27 0.22 -2.80 16 26 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 27 C -0.11 -3.88 9.29 22.27 0.21 -3.68 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 1.43 7.96 -2.39 -0.02 1.41 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.04 1.30 5.95 -2.38 -0.01 1.29 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.41 13.46 7.80 -92.71 -0.72 12.73 16 38 H 0.06 2.33 2.76 -2.39 -0.01 2.32 16 39 H 0.08 4.18 6.34 -2.39 -0.02 4.17 16 40 H 0.04 1.89 7.70 -2.39 -0.02 1.87 16 41 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 42 H 0.12 4.12 6.30 -2.91 -0.02 4.10 16 43 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 44 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 45 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 46 H 0.12 3.90 7.82 -2.91 -0.02 3.87 16 Total: -1.00 -69.14 371.00 4.54 -64.60 By element: Atomic # 1 Polarization: 39.12 SS G_CDS: 0.27 Total: 39.40 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 6.10 Total: 5.37 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -3.77 Total: -98.48 kcal Atomic # 8 Polarization: -54.99 SS G_CDS: -0.09 Total: -55.08 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -69.14 4.54 -64.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066644056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.042 kcal (2) G-P(sol) polarization free energy of solvation -69.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds