Wall clock time and date at job start Tue Mar 31 2020 12:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47217 * 2 1 4 4 C 1.52999 * 109.47467 * 120.00256 * 2 1 3 5 5 C 1.50694 * 109.47486 * 64.99882 * 4 2 1 6 6 O 1.21283 * 119.99992 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00331 * 180.02562 * 5 4 2 8 8 C 1.46503 * 120.00294 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.46794 * 34.99314 * 8 7 5 10 10 C 1.50704 * 109.47186 * 154.99799 * 8 7 5 11 11 O 1.21290 * 119.99868 * 19.98233 * 10 8 7 12 12 N 1.34779 * 119.99545 * 199.71019 * 10 8 7 13 13 C 1.46498 * 120.00313 * 4.59719 * 12 10 8 14 14 C 1.37101 * 119.99390 * 184.60055 * 12 10 8 15 15 H 1.07994 * 120.00272 * 353.15792 * 14 12 10 16 16 C 1.38954 * 119.99517 * 173.16241 * 14 12 10 17 17 N 1.31412 * 119.99955 * 8.40009 * 16 14 12 18 18 Si 1.86800 * 119.99636 * 188.40627 * 16 14 12 19 19 H 1.48494 * 109.47286 * 59.99695 * 18 16 14 20 20 H 1.48505 * 109.46716 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46843 * 299.99581 * 18 16 14 22 22 C 1.50704 * 109.46730 * 274.99512 * 8 7 5 23 23 C 1.38236 * 119.99794 * 313.01713 * 22 8 7 24 24 C 1.38236 * 119.99741 * 179.81072 * 23 22 8 25 25 C 1.38234 * 119.99990 * 0.40026 * 24 23 22 26 26 C 1.38241 * 120.00107 * 359.85323 * 25 24 23 27 27 C 1.38235 * 119.99865 * 359.95902 * 26 25 24 28 28 H 1.08992 * 109.47473 * 60.00154 * 1 2 3 29 29 H 1.09010 * 109.47055 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47094 * 299.99396 * 1 2 3 31 31 H 1.09006 * 109.46987 * 239.99878 * 2 1 3 32 32 H 1.09000 * 109.47175 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46804 * 300.00028 * 3 2 1 34 34 H 1.08997 * 109.47452 * 60.00058 * 3 2 1 35 35 H 1.09006 * 109.46658 * 304.99416 * 4 2 1 36 36 H 1.09002 * 109.47537 * 185.00119 * 4 2 1 37 37 H 0.97011 * 119.99870 * 359.97438 * 7 5 4 38 38 H 1.09007 * 109.46832 * 1.44678 * 13 12 10 39 39 H 1.08995 * 109.47071 * 121.45209 * 13 12 10 40 40 H 1.08999 * 109.47231 * 241.45487 * 13 12 10 41 41 H 0.96998 * 119.99342 * 180.02562 * 17 16 14 42 42 H 1.08003 * 120.00571 * 0.02562 * 23 22 8 43 43 H 1.07997 * 120.00459 * 180.23524 * 24 23 22 44 44 H 1.07997 * 120.00500 * 179.83554 * 25 24 23 45 45 H 1.07998 * 120.00359 * 179.97438 * 26 25 24 46 46 H 1.07993 * 120.00309 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 -2.1733 1.1889 6 8 1.0118 -2.5904 0.2399 7 7 1.9846 -3.0085 2.1894 8 6 1.5976 -4.4202 2.1305 9 1 1.6294 -4.7628 1.0963 10 6 2.5533 -5.2382 2.9604 11 8 3.2255 -4.7021 3.8159 12 7 2.6570 -6.5663 2.7556 13 6 1.9169 -7.1987 1.6608 14 6 3.4551 -7.3254 3.5720 15 1 4.0852 -6.8474 4.3073 16 6 3.4531 -8.7099 3.4532 17 7 2.8175 -9.2828 2.4558 18 14 4.3538 -9.7565 4.7112 19 1 3.7821 -9.5113 6.0596 20 1 4.2000 -11.1917 4.3623 21 1 5.7950 -9.3985 4.7121 22 6 0.1996 -4.5807 2.6701 23 6 -0.1562 -3.9727 3.8595 24 6 -1.4396 -4.1167 4.3524 25 6 -2.3648 -4.8754 3.6601 26 6 -2.0075 -5.4877 2.4734 27 6 -0.7252 -5.3406 1.9785 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6055 -0.2617 2.1369 36 1 3.1264 -0.6444 1.2951 37 1 2.4886 -2.6750 2.9483 38 1 1.3625 -6.4385 1.1104 39 1 2.6165 -7.6961 0.9891 40 1 1.2210 -7.9318 2.0686 41 1 2.8159 -10.2493 2.3732 42 1 0.5675 -3.3823 4.4019 43 1 -1.7188 -3.6386 5.2796 44 1 -3.3668 -4.9901 4.0465 45 1 -2.7301 -6.0809 1.9327 46 1 -0.4458 -5.8192 1.0516 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066644057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:02 Heat of formation + Delta-G solvation = -40.478497 kcal Electronic energy + Delta-G solvation = -27562.969144 eV Core-core repulsion = 23838.868234 eV Total energy + Delta-G solvation = -3724.100910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.22742 -38.89023 -38.01426 -35.71730 -34.97814 -34.07844 -31.93332 -31.00740 -30.55176 -28.46169 -27.12055 -26.86403 -25.88187 -24.06714 -22.32667 -21.63672 -20.70672 -19.71549 -19.08675 -17.28622 -16.93164 -16.84834 -15.91739 -15.53716 -15.38859 -15.05945 -14.60772 -14.41630 -14.11877 -14.04101 -13.87728 -13.63814 -13.31360 -13.09411 -12.78396 -12.39671 -12.28893 -12.20721 -12.05509 -11.87065 -11.67044 -11.49276 -11.13693 -11.09278 -10.98370 -10.89720 -10.79371 -10.70179 -10.59949 -10.45733 -10.20483 -9.51408 -9.10822 -9.07283 -8.65728 -8.55442 -8.13887 -7.96562 -6.33260 -3.88997 1.64075 1.75094 2.89314 3.12650 3.19851 3.22954 3.39885 3.73055 4.04266 4.17129 4.73925 4.80272 4.88698 4.93947 5.04259 5.15999 5.22220 5.29288 5.34222 5.42596 5.47430 5.56542 5.60332 5.66399 5.67182 5.70724 5.84850 5.86550 5.92549 5.94990 6.10037 6.23076 6.32271 6.34290 6.35822 6.45632 6.71155 6.76658 6.79935 6.97691 7.04278 7.31134 7.34137 7.48365 7.84251 7.95734 8.36858 8.52461 9.06946 9.32884 9.82695 10.60558 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014012 B = 0.004074 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.768555 B = 6870.389430 C = 7940.905049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.080 4.080 3 C -0.147 4.147 4 C -0.136 4.136 5 C 0.513 3.487 6 O -0.541 6.541 7 N -0.705 5.705 8 C 0.174 3.826 9 H 0.106 0.894 10 C 0.433 3.567 11 O -0.595 6.595 12 N -0.430 5.430 13 C 0.108 3.892 14 C -0.303 4.303 15 H 0.106 0.894 16 C 0.030 3.970 17 N -0.881 5.881 18 Si 0.933 3.067 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.272 1.272 22 C -0.075 4.075 23 C -0.097 4.097 24 C -0.126 4.126 25 C -0.125 4.125 26 C -0.122 4.122 27 C -0.097 4.097 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.408 0.592 38 H 0.026 0.974 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.268 0.732 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.120 0.880 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.947 12.859 -2.572 14.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.099 4.099 3 C -0.205 4.205 4 C -0.176 4.176 5 C 0.300 3.700 6 O -0.418 6.418 7 N -0.358 5.358 8 C 0.065 3.935 9 H 0.123 0.877 10 C 0.219 3.781 11 O -0.482 6.482 12 N -0.146 5.146 13 C -0.035 4.035 14 C -0.431 4.431 15 H 0.124 0.876 16 C -0.173 4.173 17 N -0.521 5.521 18 Si 0.759 3.241 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.198 1.198 22 C -0.077 4.077 23 C -0.115 4.115 24 C -0.144 4.144 25 C -0.143 4.143 26 C -0.140 4.140 27 C -0.116 4.116 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.245 0.755 38 H 0.044 0.956 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.138 0.862 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.070 12.556 -2.916 14.702 hybrid contribution 0.606 -0.662 0.914 1.281 sum -6.464 11.894 -2.002 13.685 Atomic orbital electron populations 1.21955 0.94789 1.03580 1.00667 1.20846 0.96613 0.95095 0.97319 1.21863 1.00858 0.95980 1.01766 1.21759 1.02927 0.92173 1.00774 1.20668 0.79117 0.88239 0.81999 1.90640 1.39955 1.77912 1.33338 1.45827 1.57192 1.08519 1.24215 1.19564 0.90621 0.82209 1.01087 0.87668 1.19445 0.87434 0.83156 0.88017 1.90480 1.49256 1.70608 1.37837 1.43610 1.39063 1.05026 1.26877 1.22012 0.96871 0.95166 0.89466 1.19775 1.20677 0.88078 1.14568 0.87648 1.25354 0.97391 0.97136 0.97382 1.70161 1.42213 1.11154 1.28591 0.85891 0.79604 0.78162 0.80429 1.19786 1.20810 1.19762 1.19892 0.94485 0.97919 0.95390 1.20926 0.96141 0.99284 0.95141 1.21036 0.93671 0.99879 0.99794 1.21061 0.99217 0.98276 0.95724 1.21044 0.96281 1.00121 0.96559 1.21066 0.93021 0.97819 0.99671 0.93214 0.90460 0.93544 0.90420 0.92715 0.92561 0.92736 0.89042 0.88928 0.75500 0.95596 0.91061 0.90724 0.92103 0.86259 0.86474 0.86569 0.86236 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.93 37.15 0.33 -1.44 16 2 C -0.08 -0.88 2.57 -90.62 -0.23 -1.11 16 3 C -0.15 -1.26 9.19 37.16 0.34 -0.92 16 4 C -0.14 -1.55 5.17 -27.89 -0.14 -1.69 16 5 C 0.51 7.99 7.50 -10.99 -0.08 7.91 16 6 O -0.54 -9.88 13.63 5.55 0.08 -9.80 16 7 N -0.71 -11.88 4.55 -56.07 -0.26 -12.14 16 8 C 0.17 3.40 1.84 -70.23 -0.13 3.27 16 9 H 0.11 2.12 5.65 -51.93 -0.29 1.82 16 10 C 0.43 10.29 6.76 -10.98 -0.07 10.22 16 11 O -0.59 -15.42 15.51 5.55 0.09 -15.34 16 12 N -0.43 -10.91 3.03 -122.19 -0.37 -11.28 16 13 C 0.11 2.46 8.36 59.85 0.50 2.97 16 14 C -0.30 -8.31 9.55 -14.93 -0.14 -8.46 16 15 H 0.11 3.00 7.19 -52.49 -0.38 2.63 16 16 C 0.03 0.78 5.45 -17.47 -0.10 0.69 16 17 N -0.88 -22.72 9.48 55.50 0.53 -22.20 16 18 Si 0.93 20.49 29.56 -169.99 -5.03 15.47 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 C -0.08 -1.38 4.76 -104.62 -0.50 -1.88 16 23 C -0.10 -1.67 9.26 -39.58 -0.37 -2.03 16 24 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 25 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 26 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 27 C -0.10 -1.67 8.87 -39.58 -0.35 -2.02 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.11 5.95 -51.92 -0.31 0.80 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.96 7.95 -51.93 -0.41 0.55 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.41 6.57 7.74 -40.82 -0.32 6.26 16 38 H 0.03 0.51 3.36 -51.92 -0.17 0.34 16 39 H 0.07 1.71 7.14 -51.93 -0.37 1.34 16 40 H 0.07 1.79 6.97 -51.93 -0.36 1.43 16 41 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 42 H 0.12 2.02 7.93 -52.48 -0.42 1.60 16 43 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 46 H 0.12 2.03 6.65 -52.49 -0.35 1.68 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -30.60 371.46 -8.24 -38.84 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -6.74 Total: 12.04 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.13 Total: -1.19 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.10 Total: -45.62 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: 0.16 Total: -25.14 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.60 -8.24 -38.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066644057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.635 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds