Wall clock time and date at job start Tue Mar 31 2020 12:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47217 * 2 1 4 4 C 1.52999 * 109.47467 * 120.00256 * 2 1 3 5 5 C 1.50694 * 109.47486 * 64.99882 * 4 2 1 6 6 O 1.21283 * 119.99992 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00331 * 180.02562 * 5 4 2 8 8 C 1.46503 * 120.00294 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.46794 * 34.99314 * 8 7 5 10 10 C 1.50704 * 109.47186 * 154.99799 * 8 7 5 11 11 O 1.21290 * 119.99868 * 19.98233 * 10 8 7 12 12 N 1.34779 * 119.99545 * 199.71019 * 10 8 7 13 13 C 1.46498 * 120.00313 * 4.59719 * 12 10 8 14 14 C 1.37101 * 119.99390 * 184.60055 * 12 10 8 15 15 H 1.07994 * 120.00272 * 353.15792 * 14 12 10 16 16 C 1.38954 * 119.99517 * 173.16241 * 14 12 10 17 17 N 1.31412 * 119.99955 * 8.40009 * 16 14 12 18 18 Si 1.86800 * 119.99636 * 188.40627 * 16 14 12 19 19 H 1.48494 * 109.47286 * 59.99695 * 18 16 14 20 20 H 1.48505 * 109.46716 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46843 * 299.99581 * 18 16 14 22 22 C 1.50704 * 109.46730 * 274.99512 * 8 7 5 23 23 C 1.38236 * 119.99794 * 313.01713 * 22 8 7 24 24 C 1.38236 * 119.99741 * 179.81072 * 23 22 8 25 25 C 1.38234 * 119.99990 * 0.40026 * 24 23 22 26 26 C 1.38241 * 120.00107 * 359.85323 * 25 24 23 27 27 C 1.38235 * 119.99865 * 359.95902 * 26 25 24 28 28 H 1.08992 * 109.47473 * 60.00154 * 1 2 3 29 29 H 1.09010 * 109.47055 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47094 * 299.99396 * 1 2 3 31 31 H 1.09006 * 109.46987 * 239.99878 * 2 1 3 32 32 H 1.09000 * 109.47175 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46804 * 300.00028 * 3 2 1 34 34 H 1.08997 * 109.47452 * 60.00058 * 3 2 1 35 35 H 1.09006 * 109.46658 * 304.99416 * 4 2 1 36 36 H 1.09002 * 109.47537 * 185.00119 * 4 2 1 37 37 H 0.97011 * 119.99870 * 359.97438 * 7 5 4 38 38 H 1.09007 * 109.46832 * 1.44678 * 13 12 10 39 39 H 1.08995 * 109.47071 * 121.45209 * 13 12 10 40 40 H 1.08999 * 109.47231 * 241.45487 * 13 12 10 41 41 H 0.96998 * 119.99342 * 180.02562 * 17 16 14 42 42 H 1.08003 * 120.00571 * 0.02562 * 23 22 8 43 43 H 1.07997 * 120.00459 * 180.23524 * 24 23 22 44 44 H 1.07997 * 120.00500 * 179.83554 * 25 24 23 45 45 H 1.07998 * 120.00359 * 179.97438 * 26 25 24 46 46 H 1.07993 * 120.00309 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 -2.1733 1.1889 6 8 1.0118 -2.5904 0.2399 7 7 1.9846 -3.0085 2.1894 8 6 1.5976 -4.4202 2.1305 9 1 1.6294 -4.7628 1.0963 10 6 2.5533 -5.2382 2.9604 11 8 3.2255 -4.7021 3.8159 12 7 2.6570 -6.5663 2.7556 13 6 1.9169 -7.1987 1.6608 14 6 3.4551 -7.3254 3.5720 15 1 4.0852 -6.8474 4.3073 16 6 3.4531 -8.7099 3.4532 17 7 2.8175 -9.2828 2.4558 18 14 4.3538 -9.7565 4.7112 19 1 3.7821 -9.5113 6.0596 20 1 4.2000 -11.1917 4.3623 21 1 5.7950 -9.3985 4.7121 22 6 0.1996 -4.5807 2.6701 23 6 -0.1562 -3.9727 3.8595 24 6 -1.4396 -4.1167 4.3524 25 6 -2.3648 -4.8754 3.6601 26 6 -2.0075 -5.4877 2.4734 27 6 -0.7252 -5.3406 1.9785 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6055 -0.2617 2.1369 36 1 3.1264 -0.6444 1.2951 37 1 2.4886 -2.6750 2.9483 38 1 1.3625 -6.4385 1.1104 39 1 2.6165 -7.6961 0.9891 40 1 1.2210 -7.9318 2.0686 41 1 2.8159 -10.2493 2.3732 42 1 0.5675 -3.3823 4.4019 43 1 -1.7188 -3.6386 5.2796 44 1 -3.3668 -4.9901 4.0465 45 1 -2.7301 -6.0809 1.9327 46 1 -0.4458 -5.8192 1.0516 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066644057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:01 Heat of formation + Delta-G solvation = -57.962718 kcal Electronic energy + Delta-G solvation = -27563.727317 eV Core-core repulsion = 23838.868234 eV Total energy + Delta-G solvation = -3724.859083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.68280 -40.26940 -39.55998 -37.04040 -36.53532 -35.56289 -33.78511 -32.44201 -31.78421 -29.58737 -28.60534 -27.91495 -27.49986 -25.88569 -23.57687 -22.94958 -21.94973 -20.90702 -20.60295 -19.06255 -18.57369 -18.16492 -17.40083 -17.09825 -16.66965 -16.32561 -16.23788 -15.81988 -15.68402 -15.56052 -15.16107 -14.69278 -14.65538 -14.32885 -14.27042 -13.83287 -13.70602 -13.45272 -13.30605 -13.19321 -13.00085 -12.86077 -12.73500 -12.70421 -12.37427 -12.15514 -12.12956 -12.03537 -11.84578 -11.72926 -11.55300 -11.05375 -10.79914 -10.73781 -10.13433 -9.96090 -9.80382 -9.58606 -8.30373 -5.96052 0.37570 0.50947 1.35453 1.39500 1.50164 1.64598 1.88826 2.04741 2.29613 2.79389 3.06601 3.15178 3.68740 3.83812 3.87166 3.89292 3.94562 4.05805 4.14867 4.24074 4.26204 4.42783 4.51121 4.63505 4.68737 4.72402 4.73996 4.77969 4.88143 5.03568 5.07328 5.10929 5.11260 5.14722 5.28836 5.31604 5.39434 5.41155 5.50692 5.54942 5.56843 5.59253 5.66812 5.95505 6.10588 6.37018 6.56352 7.06570 7.24252 7.38135 7.87543 8.61477 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014012 B = 0.004074 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.768555 B = 6870.389430 C = 7940.905049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 C -0.141 4.141 4 C -0.129 4.129 5 C 0.510 3.490 6 O -0.570 6.570 7 N -0.706 5.706 8 C 0.189 3.811 9 H 0.094 0.906 10 C 0.431 3.569 11 O -0.622 6.622 12 N -0.447 5.447 13 C 0.126 3.874 14 C -0.344 4.344 15 H 0.083 0.917 16 C -0.002 4.002 17 N -0.892 5.892 18 Si 0.995 3.005 19 H -0.273 1.273 20 H -0.268 1.268 21 H -0.270 1.270 22 C -0.099 4.099 23 C -0.115 4.115 24 C -0.126 4.126 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.118 4.118 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.411 0.589 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.274 0.726 42 H 0.114 0.886 43 H 0.146 0.854 44 H 0.154 0.846 45 H 0.147 0.853 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.246 13.778 -1.864 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 C -0.198 4.198 4 C -0.169 4.169 5 C 0.299 3.701 6 O -0.449 6.449 7 N -0.358 5.358 8 C 0.080 3.920 9 H 0.111 0.889 10 C 0.219 3.781 11 O -0.510 6.510 12 N -0.163 5.163 13 C -0.017 4.017 14 C -0.472 4.472 15 H 0.101 0.899 16 C -0.203 4.203 17 N -0.531 5.531 18 Si 0.817 3.183 19 H -0.198 1.198 20 H -0.193 1.193 21 H -0.195 1.195 22 C -0.100 4.100 23 C -0.134 4.134 24 C -0.144 4.144 25 C -0.137 4.137 26 C -0.142 4.142 27 C -0.136 4.136 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.249 0.751 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.132 0.868 43 H 0.164 0.836 44 H 0.171 0.829 45 H 0.165 0.835 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.378 13.489 -2.231 16.035 hybrid contribution 0.941 -0.913 0.674 1.474 sum -7.437 12.576 -1.557 14.693 Atomic orbital electron populations 1.21906 0.95305 1.01739 1.01764 1.20851 0.96186 0.96604 0.96208 1.21806 1.01361 0.93931 1.02702 1.21845 1.04206 0.88810 1.02022 1.21478 0.78148 0.89641 0.80873 1.90630 1.41217 1.78741 1.34340 1.45875 1.57535 1.07547 1.24881 1.19224 0.90572 0.83024 0.99227 0.88862 1.20194 0.87143 0.82990 0.87748 1.90438 1.50313 1.71206 1.39078 1.43811 1.39426 1.05726 1.27380 1.21796 0.95925 0.95396 0.88584 1.19769 1.22377 0.89197 1.15819 0.89867 1.26114 0.97837 0.97493 0.98887 1.70253 1.42162 1.11655 1.29062 0.84980 0.78389 0.76987 0.77899 1.19798 1.19273 1.19512 1.19875 0.93900 0.99692 0.96581 1.21046 0.97425 0.99850 0.95053 1.21410 0.92695 0.99560 1.00723 1.21522 1.00641 0.96644 0.94885 1.21424 0.95748 0.99948 0.97036 1.21223 0.94177 0.98218 0.99991 0.92296 0.93655 0.92282 0.92335 0.91895 0.91919 0.91530 0.86783 0.87084 0.75119 0.93029 0.92770 0.92085 0.91585 0.86792 0.83614 0.82875 0.83495 0.86048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.93 71.98 0.64 -2.68 16 2 C -0.08 -1.65 2.57 -10.80 -0.03 -1.67 16 3 C -0.14 -2.05 9.19 71.98 0.66 -1.38 16 4 C -0.13 -2.76 5.17 29.85 0.15 -2.61 16 5 C 0.51 15.98 7.50 87.66 0.66 16.64 16 6 O -0.57 -21.36 13.63 -3.04 -0.04 -21.40 16 7 N -0.71 -24.29 4.55 -449.68 -2.05 -26.34 16 8 C 0.19 7.62 1.84 43.50 0.08 7.70 16 9 H 0.09 3.93 5.65 -2.39 -0.01 3.91 16 10 C 0.43 21.32 6.76 87.66 0.59 21.91 16 11 O -0.62 -33.51 15.51 -3.06 -0.05 -33.55 16 12 N -0.45 -23.59 3.03 -658.89 -1.99 -25.58 16 13 C 0.13 5.94 8.36 127.77 1.07 7.01 16 14 C -0.34 -19.54 9.55 84.04 0.80 -18.74 16 15 H 0.08 4.98 7.19 -2.91 -0.02 4.96 16 16 C 0.00 -0.09 5.45 84.93 0.46 0.38 16 17 N -0.89 -46.48 9.48 21.66 0.21 -46.28 16 18 Si 0.99 42.13 29.56 68.60 2.03 44.16 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 20 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 22 C -0.10 -3.68 4.76 -19.86 -0.09 -3.78 16 23 C -0.12 -3.96 9.26 22.27 0.21 -3.75 16 24 C -0.13 -3.53 10.05 22.27 0.22 -3.30 16 25 C -0.12 -3.04 10.05 22.27 0.22 -2.81 16 26 C -0.12 -3.49 10.05 22.27 0.22 -3.26 16 27 C -0.12 -4.03 8.87 22.27 0.20 -3.83 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 1.31 5.95 -2.38 -0.01 1.29 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.43 7.95 -2.38 -0.02 1.41 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.41 13.52 7.74 -92.70 -0.72 12.80 16 38 H 0.05 2.13 3.36 -2.38 -0.01 2.12 16 39 H 0.05 2.70 7.14 -2.39 -0.02 2.68 16 40 H 0.06 3.01 6.97 -2.39 -0.02 3.00 16 41 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 42 H 0.11 3.91 7.93 -2.91 -0.02 3.89 16 43 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 44 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 45 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 46 H 0.12 4.06 6.65 -2.91 -0.02 4.04 16 Total: -1.00 -68.57 371.46 4.45 -64.11 By element: Atomic # 1 Polarization: 38.80 SS G_CDS: 0.28 Total: 39.08 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 6.08 Total: 5.80 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -3.84 Total: -98.20 kcal Atomic # 8 Polarization: -54.87 SS G_CDS: -0.09 Total: -54.95 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -68.57 4.45 -64.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066644057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.148 kcal (2) G-P(sol) polarization free energy of solvation -68.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds