Wall clock time and date at job start Tue Mar 31 2020 12:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47200 * 2 1 4 4 C 1.53004 * 109.47057 * 119.99656 * 2 1 3 5 5 H 1.09000 * 109.47031 * 181.19221 * 4 2 1 6 6 N 1.46500 * 109.47230 * 61.18792 * 4 2 1 7 7 C 1.34782 * 119.99889 * 84.99646 * 6 4 2 8 8 O 1.21552 * 119.99706 * 0.02562 * 7 6 4 9 9 C 1.47844 * 119.99864 * 180.27676 * 7 6 4 10 10 C 1.39577 * 120.14214 * 359.45208 * 9 7 6 11 11 C 1.37957 * 119.84968 * 179.79198 * 10 9 7 12 12 C 1.38357 * 120.14564 * 0.48524 * 11 10 9 13 13 C 1.38363 * 120.29113 * 359.74447 * 12 11 10 14 14 C 1.37954 * 120.14565 * 0.02562 * 13 12 11 15 15 C 1.50699 * 109.46918 * 301.18781 * 4 2 1 16 16 O 1.21284 * 119.99815 * 87.68613 * 15 4 2 17 17 N 1.34774 * 120.00257 * 267.68171 * 15 4 2 18 18 C 1.46502 * 119.99852 * 353.93462 * 17 15 4 19 19 C 1.46497 * 120.00051 * 173.93771 * 17 15 4 20 20 C 1.50706 * 109.47383 * 90.00094 * 19 17 15 21 21 H 1.07995 * 119.99424 * 359.97438 * 20 19 17 22 22 C 1.37869 * 119.99813 * 179.97438 * 20 19 17 23 23 N 1.31514 * 120.00179 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99803 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47097 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47254 * 120.00134 * 24 22 20 27 27 H 1.48499 * 109.47019 * 239.99780 * 24 22 20 28 28 H 1.08999 * 109.47528 * 300.00116 * 1 2 3 29 29 H 1.09008 * 109.47422 * 60.00256 * 1 2 3 30 30 H 1.08999 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47246 * 239.99548 * 2 1 3 32 32 H 1.08995 * 109.47687 * 63.63577 * 3 2 1 33 33 H 1.09001 * 109.47052 * 183.64197 * 3 2 1 34 34 H 1.09006 * 109.46910 * 303.63382 * 3 2 1 35 35 H 0.96998 * 119.99839 * 265.00296 * 6 4 2 36 36 H 1.07994 * 120.07818 * 359.97438 * 10 9 7 37 37 H 1.08005 * 119.93172 * 180.22628 * 11 10 9 38 38 H 1.08007 * 119.85784 * 179.72605 * 12 11 10 39 39 H 1.08004 * 119.92681 * 179.97438 * 13 12 11 40 40 H 1.08002 * 120.07189 * 179.97438 * 14 13 12 41 41 H 1.08996 * 109.47205 * 84.68289 * 18 17 15 42 42 H 1.08999 * 109.47476 * 204.68632 * 18 17 15 43 43 H 1.09006 * 109.47217 * 324.68459 * 18 17 15 44 44 H 1.09002 * 109.46847 * 209.99703 * 19 17 15 45 45 H 1.08997 * 109.47129 * 329.99222 * 19 17 15 46 46 H 0.97007 * 120.00290 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1297 -0.7027 1.2601 6 7 1.5751 -2.1104 1.2352 7 6 2.2745 -3.0483 0.5659 8 8 3.2911 -2.7414 -0.0256 9 6 1.8021 -4.4491 0.5465 10 6 0.6385 -4.8058 1.2298 11 6 0.2009 -6.1139 1.2042 12 6 0.9181 -7.0731 0.5115 13 6 2.0749 -6.7269 -0.1640 14 6 2.5210 -5.4216 -0.1503 15 6 1.5137 -0.0279 2.4795 16 8 0.4352 -0.3411 2.9375 17 7 2.2414 0.9401 3.0708 18 6 3.5986 1.2273 2.5999 19 6 1.6754 1.7052 4.1846 20 6 2.0013 1.0159 5.4846 21 1 2.5725 0.0994 5.4813 22 6 1.5701 1.5553 6.6778 23 7 0.8749 2.6717 6.6817 24 14 1.9735 0.7005 8.2891 25 1 2.7598 -0.5287 8.0140 26 1 2.7673 1.6145 9.1492 27 1 0.7133 0.3360 8.9850 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.7309 1.9372 0.9207 33 1 3.1280 1.4431 -0.0653 34 1 1.6244 1.9748 -0.8557 35 1 0.7640 -2.3553 1.7074 36 1 0.0804 -4.0591 1.7749 37 1 -0.7014 -6.3907 1.7294 38 1 0.5736 -8.0967 0.4982 39 1 2.6305 -7.4806 -0.7025 40 1 3.4244 -5.1528 -0.6776 41 1 3.5524 1.9156 1.7560 42 1 4.1751 1.6798 3.4067 43 1 4.0783 0.3000 2.2864 44 1 2.1005 2.7089 4.1891 45 1 0.5935 1.7694 4.0685 46 1 0.5713 3.0511 7.5213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069649000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:08 Heat of formation + Delta-G solvation = -45.813076 kcal Electronic energy + Delta-G solvation = -27292.496935 eV Core-core repulsion = 23568.164700 eV Total energy + Delta-G solvation = -3724.332235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.63897 -39.47380 -38.13981 -35.78190 -35.03553 -33.45593 -32.58899 -31.29581 -31.10901 -28.45075 -27.14473 -26.75333 -25.60519 -23.82764 -22.91920 -22.55080 -21.11106 -20.03091 -18.82098 -17.83608 -16.75044 -16.56174 -16.34373 -15.79106 -15.57996 -15.36337 -14.82796 -14.71675 -14.51723 -14.13662 -13.93969 -13.79965 -13.49108 -13.26973 -12.74060 -12.68978 -12.61219 -12.27659 -12.08538 -11.91683 -11.88067 -11.59288 -11.30655 -11.28053 -11.16510 -10.91561 -10.80364 -10.79817 -10.61837 -10.20031 -9.98318 -9.64464 -9.30054 -9.21646 -9.11412 -8.78370 -8.47332 -7.72448 -6.08089 -4.12589 0.67424 1.14586 2.77665 2.93595 3.27644 3.34734 3.36535 3.40296 3.72040 3.90564 4.42054 4.54777 4.62069 4.71489 4.84769 4.94842 4.97592 5.05420 5.15231 5.22801 5.27123 5.27853 5.46729 5.58939 5.71013 5.74198 5.75351 5.79558 5.92392 5.99803 6.02554 6.10671 6.13743 6.17891 6.20677 6.22032 6.33189 6.44206 6.52766 6.65244 6.96668 7.34810 7.44144 7.53776 7.87865 8.16195 8.18442 8.30615 8.81314 8.96874 9.52605 10.99979 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012495 B = 0.003789 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.351150 B = 7387.522304 C = 8725.919067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.156 4.156 4 C 0.125 3.875 5 H 0.107 0.893 6 N -0.703 5.703 7 C 0.560 3.440 8 O -0.541 6.541 9 C -0.131 4.131 10 C -0.084 4.084 11 C -0.127 4.127 12 C -0.097 4.097 13 C -0.131 4.131 14 C -0.061 4.061 15 C 0.507 3.493 16 O -0.536 6.536 17 N -0.592 5.592 18 C 0.071 3.929 19 C 0.246 3.754 20 C -0.525 4.525 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.898 3.102 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.409 0.591 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.136 0.864 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.034 0.966 45 H 0.043 0.957 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.402 -12.877 -15.437 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.213 4.213 4 C 0.017 3.983 5 H 0.125 0.875 6 N -0.356 5.356 7 C 0.347 3.653 8 O -0.420 6.420 9 C -0.134 4.134 10 C -0.102 4.102 11 C -0.145 4.145 12 C -0.115 4.115 13 C -0.149 4.149 14 C -0.080 4.080 15 C 0.292 3.708 16 O -0.413 6.413 17 N -0.324 5.324 18 C -0.073 4.073 19 C 0.127 3.873 20 C -0.564 4.564 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.725 3.275 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.247 0.753 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.154 0.846 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.061 0.939 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.466 -12.633 -15.441 20.004 hybrid contribution -0.129 -0.519 1.292 1.398 sum 1.337 -13.151 -14.150 19.364 Atomic orbital electron populations 1.21866 0.94349 1.02007 1.02384 1.21336 0.96965 0.96460 0.96631 1.22067 1.01154 0.95217 1.02890 1.21148 1.01082 0.81414 0.94677 0.87545 1.45717 1.29133 1.07488 1.53239 1.18259 0.83342 0.84962 0.78715 1.90747 1.24747 1.82023 1.44458 1.19958 0.97537 0.93568 1.02357 1.21454 0.94908 0.97087 0.96800 1.21143 1.00500 0.92861 1.00006 1.21383 0.94741 0.99570 0.95841 1.21155 0.97120 0.96154 1.00483 1.21286 0.98816 0.91989 0.95881 1.20075 0.85622 0.80935 0.84140 1.90660 1.22141 1.63445 1.65061 1.48130 1.14323 1.35614 1.34303 1.21949 0.84382 1.00590 1.00371 1.19337 0.95391 0.90345 0.82196 1.21447 1.34737 1.09361 0.90817 0.92419 1.24925 0.94937 0.94995 0.99219 1.69937 1.36996 1.19494 1.26951 0.86447 0.78161 0.79544 0.83303 1.19831 1.20936 1.20873 0.91338 0.92846 0.92798 0.90118 0.91325 0.92061 0.92225 0.75313 0.85237 0.85285 0.85644 0.85385 0.84632 0.92676 0.90343 0.92411 0.94764 0.93888 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.63 37.15 0.32 -1.76 16 2 C -0.09 -1.31 2.90 -90.62 -0.26 -1.58 16 3 C -0.16 -1.99 7.52 37.16 0.28 -1.71 16 4 C 0.13 2.00 1.84 -69.08 -0.13 1.88 16 5 H 0.11 1.71 5.27 -51.93 -0.27 1.44 16 6 N -0.70 -10.63 4.30 -55.88 -0.24 -10.87 16 7 C 0.56 8.38 7.74 -12.33 -0.10 8.29 16 8 O -0.54 -9.30 16.01 5.32 0.09 -9.22 16 9 C -0.13 -1.65 5.87 -104.97 -0.62 -2.27 16 10 C -0.08 -0.92 9.54 -39.19 -0.37 -1.29 16 11 C -0.13 -1.16 10.03 -39.64 -0.40 -1.56 16 12 C -0.10 -0.80 10.04 -39.49 -0.40 -1.20 16 13 C -0.13 -1.16 10.03 -39.64 -0.40 -1.55 16 14 C -0.06 -0.68 9.60 -39.19 -0.38 -1.05 16 15 C 0.51 10.07 5.16 -10.99 -0.06 10.01 16 16 O -0.54 -12.37 14.63 5.55 0.08 -12.29 16 17 N -0.59 -12.14 2.20 -182.95 -0.40 -12.54 16 18 C 0.07 1.13 9.18 59.85 0.55 1.68 16 19 C 0.25 6.24 5.09 -5.19 -0.03 6.21 16 20 C -0.52 -14.67 9.39 -34.44 -0.32 -15.00 16 21 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 24 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H 0.07 1.13 6.53 -51.93 -0.34 0.79 16 29 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.05 0.73 7.64 -51.93 -0.40 0.33 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.02 5.82 -51.93 -0.30 0.71 16 33 H 0.06 0.70 7.11 -51.93 -0.37 0.33 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.41 6.02 5.92 -40.82 -0.24 5.78 16 36 H 0.13 1.34 6.41 -52.49 -0.34 1.01 16 37 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 38 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 40 H 0.14 1.48 7.65 -52.49 -0.40 1.08 16 41 H 0.05 0.74 5.40 -51.93 -0.28 0.46 16 42 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 43 H 0.06 0.84 6.20 -51.93 -0.32 0.51 16 44 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 45 H 0.04 1.22 7.51 -51.93 -0.39 0.83 16 46 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 371.58 15.07 5.60 5.60 Total: -1.00 -33.04 371.58 -8.13 -41.17 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.57 Total: 6.13 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -2.40 Total: 0.73 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.09 Total: -48.86 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: 0.17 Total: -21.51 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.04 -8.13 -41.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069649000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.640 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds