Wall clock time and date at job start Tue Mar 31 2020 12:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47200 * 2 1 4 4 C 1.53004 * 109.47057 * 119.99656 * 2 1 3 5 5 H 1.09000 * 109.47031 * 181.19221 * 4 2 1 6 6 N 1.46500 * 109.47230 * 61.18792 * 4 2 1 7 7 C 1.34782 * 119.99889 * 84.99646 * 6 4 2 8 8 O 1.21552 * 119.99706 * 0.02562 * 7 6 4 9 9 C 1.47844 * 119.99864 * 180.27676 * 7 6 4 10 10 C 1.39577 * 120.14214 * 359.45208 * 9 7 6 11 11 C 1.37957 * 119.84968 * 179.79198 * 10 9 7 12 12 C 1.38357 * 120.14564 * 0.48524 * 11 10 9 13 13 C 1.38363 * 120.29113 * 359.74447 * 12 11 10 14 14 C 1.37954 * 120.14565 * 0.02562 * 13 12 11 15 15 C 1.50699 * 109.46918 * 301.18781 * 4 2 1 16 16 O 1.21284 * 119.99815 * 87.68613 * 15 4 2 17 17 N 1.34774 * 120.00257 * 267.68171 * 15 4 2 18 18 C 1.46502 * 119.99852 * 353.93462 * 17 15 4 19 19 C 1.46497 * 120.00051 * 173.93771 * 17 15 4 20 20 C 1.50706 * 109.47383 * 90.00094 * 19 17 15 21 21 H 1.07995 * 119.99424 * 359.97438 * 20 19 17 22 22 C 1.37869 * 119.99813 * 179.97438 * 20 19 17 23 23 N 1.31514 * 120.00179 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99803 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47097 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47254 * 120.00134 * 24 22 20 27 27 H 1.48499 * 109.47019 * 239.99780 * 24 22 20 28 28 H 1.08999 * 109.47528 * 300.00116 * 1 2 3 29 29 H 1.09008 * 109.47422 * 60.00256 * 1 2 3 30 30 H 1.08999 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47246 * 239.99548 * 2 1 3 32 32 H 1.08995 * 109.47687 * 63.63577 * 3 2 1 33 33 H 1.09001 * 109.47052 * 183.64197 * 3 2 1 34 34 H 1.09006 * 109.46910 * 303.63382 * 3 2 1 35 35 H 0.96998 * 119.99839 * 265.00296 * 6 4 2 36 36 H 1.07994 * 120.07818 * 359.97438 * 10 9 7 37 37 H 1.08005 * 119.93172 * 180.22628 * 11 10 9 38 38 H 1.08007 * 119.85784 * 179.72605 * 12 11 10 39 39 H 1.08004 * 119.92681 * 179.97438 * 13 12 11 40 40 H 1.08002 * 120.07189 * 179.97438 * 14 13 12 41 41 H 1.08996 * 109.47205 * 84.68289 * 18 17 15 42 42 H 1.08999 * 109.47476 * 204.68632 * 18 17 15 43 43 H 1.09006 * 109.47217 * 324.68459 * 18 17 15 44 44 H 1.09002 * 109.46847 * 209.99703 * 19 17 15 45 45 H 1.08997 * 109.47129 * 329.99222 * 19 17 15 46 46 H 0.97007 * 120.00290 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1297 -0.7027 1.2601 6 7 1.5751 -2.1104 1.2352 7 6 2.2745 -3.0483 0.5659 8 8 3.2911 -2.7414 -0.0256 9 6 1.8021 -4.4491 0.5465 10 6 0.6385 -4.8058 1.2298 11 6 0.2009 -6.1139 1.2042 12 6 0.9181 -7.0731 0.5115 13 6 2.0749 -6.7269 -0.1640 14 6 2.5210 -5.4216 -0.1503 15 6 1.5137 -0.0279 2.4795 16 8 0.4352 -0.3411 2.9375 17 7 2.2414 0.9401 3.0708 18 6 3.5986 1.2273 2.5999 19 6 1.6754 1.7052 4.1846 20 6 2.0013 1.0159 5.4846 21 1 2.5725 0.0994 5.4813 22 6 1.5701 1.5553 6.6778 23 7 0.8749 2.6717 6.6817 24 14 1.9735 0.7005 8.2891 25 1 2.7598 -0.5287 8.0140 26 1 2.7673 1.6145 9.1492 27 1 0.7133 0.3360 8.9850 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.7309 1.9372 0.9207 33 1 3.1280 1.4431 -0.0653 34 1 1.6244 1.9748 -0.8557 35 1 0.7640 -2.3553 1.7074 36 1 0.0804 -4.0591 1.7749 37 1 -0.7014 -6.3907 1.7294 38 1 0.5736 -8.0967 0.4982 39 1 2.6305 -7.4806 -0.7025 40 1 3.4244 -5.1528 -0.6776 41 1 3.5524 1.9156 1.7560 42 1 4.1751 1.6798 3.4067 43 1 4.0783 0.3000 2.2864 44 1 2.1005 2.7089 4.1891 45 1 0.5935 1.7694 4.0685 46 1 0.5713 3.0511 7.5213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069649000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:07 Heat of formation + Delta-G solvation = -65.757083 kcal Electronic energy + Delta-G solvation = -27293.361772 eV Core-core repulsion = 23568.164700 eV Total energy + Delta-G solvation = -3725.197072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.91029 -40.68191 -39.17937 -37.13075 -36.72172 -34.82753 -34.47705 -32.14932 -31.87013 -30.26414 -28.38605 -28.06711 -27.14654 -25.15328 -24.36492 -23.37711 -22.36695 -21.24866 -19.99022 -19.19146 -18.72476 -17.85212 -17.62215 -17.08626 -16.97330 -16.65006 -16.24386 -15.88587 -15.57669 -15.46163 -15.26944 -14.73662 -14.69827 -14.32789 -14.20975 -14.04158 -13.98022 -13.55410 -13.52692 -13.40749 -13.17156 -12.90313 -12.72595 -12.61109 -12.58183 -12.32130 -12.24246 -12.03692 -12.01771 -11.92053 -11.68656 -11.14943 -10.68292 -10.65687 -10.25404 -9.96756 -9.90816 -9.46836 -8.23904 -6.37916 -0.16942 0.40175 1.35172 1.36866 1.47634 1.54030 1.79420 1.92830 2.32034 2.46519 2.88405 3.05945 3.42219 3.61641 3.76198 3.82703 3.89817 4.00983 4.08147 4.22874 4.27912 4.41403 4.45856 4.52121 4.56748 4.68972 4.72462 4.83574 4.86264 4.90128 4.94619 4.96902 5.04877 5.07280 5.14366 5.20606 5.31084 5.35275 5.37964 5.43593 5.49449 5.52763 5.78495 5.93961 6.04201 6.34869 6.61514 6.71712 7.01199 7.21646 7.37007 8.83112 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012495 B = 0.003789 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.351150 B = 7387.522304 C = 8725.919067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.153 4.153 4 C 0.136 3.864 5 H 0.110 0.890 6 N -0.705 5.705 7 C 0.560 3.440 8 O -0.568 6.568 9 C -0.156 4.156 10 C -0.095 4.095 11 C -0.130 4.130 12 C -0.088 4.088 13 C -0.128 4.128 14 C -0.073 4.073 15 C 0.505 3.495 16 O -0.575 6.575 17 N -0.598 5.598 18 C 0.067 3.933 19 C 0.263 3.737 20 C -0.541 4.541 21 H 0.048 0.952 22 C 0.011 3.989 23 N -0.925 5.925 24 Si 0.964 3.036 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.280 1.280 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.409 0.591 36 H 0.126 0.874 37 H 0.151 0.849 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.131 0.869 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.028 0.972 45 H 0.003 0.997 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.098 -15.053 -16.309 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C -0.211 4.211 4 C 0.027 3.973 5 H 0.128 0.872 6 N -0.357 5.357 7 C 0.350 3.650 8 O -0.449 6.449 9 C -0.159 4.159 10 C -0.114 4.114 11 C -0.148 4.148 12 C -0.106 4.106 13 C -0.145 4.145 14 C -0.092 4.092 15 C 0.292 3.708 16 O -0.456 6.456 17 N -0.329 5.329 18 C -0.075 4.075 19 C 0.142 3.858 20 C -0.580 4.580 21 H 0.067 0.933 22 C -0.188 4.188 23 N -0.565 5.565 24 Si 0.789 3.211 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.206 1.206 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.247 0.753 36 H 0.144 0.856 37 H 0.169 0.831 38 H 0.178 0.822 39 H 0.175 0.825 40 H 0.149 0.851 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.046 0.954 45 H 0.022 0.978 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.187 -14.808 -16.336 22.157 hybrid contribution -0.386 0.097 1.521 1.572 sum 1.801 -14.711 -14.815 20.956 Atomic orbital electron populations 1.21811 0.94514 1.01905 1.01869 1.21351 0.96778 0.97129 0.95595 1.22061 1.02347 0.94146 1.02550 1.21061 1.00981 0.81865 0.93347 0.87212 1.45755 1.29233 1.07244 1.53486 1.18662 0.82745 0.85802 0.77823 1.90714 1.25847 1.82620 1.45692 1.19882 0.98999 0.92383 1.04631 1.21537 0.94634 0.98229 0.96983 1.21474 1.01287 0.92098 0.99938 1.21822 0.93808 1.00926 0.94007 1.21503 0.97367 0.95578 1.00093 1.21408 0.98820 0.92932 0.96052 1.20718 0.84941 0.80348 0.84752 1.90629 1.23920 1.64636 1.66366 1.48080 1.16053 1.35419 1.33323 1.22191 0.81895 1.02252 1.01159 1.18801 0.93188 0.90566 0.83248 1.21686 1.34847 1.09203 0.92263 0.93335 1.25781 0.94641 0.95634 1.02761 1.70039 1.37682 1.20701 1.28091 0.85414 0.78059 0.78605 0.78998 1.19583 1.19431 1.20568 0.94434 0.90605 0.92775 0.89091 0.93660 0.90360 0.90217 0.75258 0.85597 0.83095 0.82248 0.82518 0.85111 0.89722 0.90756 0.90592 0.95411 0.97848 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 8.63 71.98 0.62 -3.40 16 2 C -0.09 -2.42 2.90 -10.80 -0.03 -2.45 16 3 C -0.15 -3.72 7.52 71.98 0.54 -3.18 16 4 C 0.14 4.37 1.84 44.25 0.08 4.45 16 5 H 0.11 3.46 5.27 -2.39 -0.01 3.45 16 6 N -0.70 -21.72 4.30 -448.97 -1.93 -23.64 16 7 C 0.56 16.92 7.74 86.79 0.67 17.59 16 8 O -0.57 -19.54 16.01 -3.88 -0.06 -19.60 16 9 C -0.16 -3.90 5.87 -20.09 -0.12 -4.02 16 10 C -0.10 -2.04 9.54 22.53 0.21 -1.83 16 11 C -0.13 -2.09 10.03 22.23 0.22 -1.86 16 12 C -0.09 -1.15 10.04 22.33 0.22 -0.92 16 13 C -0.13 -1.90 10.03 22.23 0.22 -1.68 16 14 C -0.07 -1.56 9.60 22.52 0.22 -1.34 16 15 C 0.51 20.73 5.16 87.66 0.45 21.18 16 16 O -0.58 -27.96 14.63 -3.04 -0.04 -28.00 16 17 N -0.60 -25.19 2.20 -851.13 -1.88 -27.06 16 18 C 0.07 2.11 9.18 127.77 1.17 3.28 16 19 C 0.26 13.92 5.09 85.64 0.44 14.35 16 20 C -0.54 -31.10 9.39 25.60 0.24 -30.86 16 21 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 22 C 0.01 0.63 5.46 84.65 0.46 1.10 16 23 N -0.93 -55.25 13.29 21.44 0.28 -54.96 16 24 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 25 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 28 H 0.04 1.28 6.53 -2.39 -0.02 1.27 16 29 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.05 1.48 7.64 -2.39 -0.02 1.46 16 31 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.04 1.32 5.82 -2.39 -0.01 1.31 16 33 H 0.08 1.62 7.11 -2.39 -0.02 1.60 16 34 H 0.08 1.61 8.14 -2.38 -0.02 1.60 16 35 H 0.41 12.56 5.92 -92.71 -0.55 12.02 16 36 H 0.13 2.68 6.41 -2.91 -0.02 2.66 16 37 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 39 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 40 H 0.13 2.82 7.65 -2.91 -0.02 2.80 16 41 H 0.08 2.16 5.40 -2.39 -0.01 2.15 16 42 H 0.07 2.40 8.03 -2.39 -0.02 2.38 16 43 H 0.08 2.12 6.20 -2.38 -0.01 2.10 16 44 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 45 H 0.00 0.21 7.51 -2.39 -0.02 0.19 16 46 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 Total: -1.00 -73.88 371.58 4.48 -69.40 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.45 Total: 26.48 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 5.63 Total: 10.42 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -3.52 Total: -105.67 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: -0.11 Total: -47.60 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -73.88 4.48 -69.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069649000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.646 kcal (2) G-P(sol) polarization free energy of solvation -73.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds