Wall clock time and date at job start Tue Mar 31 2020 13:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46990 * 2 1 4 4 H 1.09004 * 109.87202 * 306.42799 * 3 2 1 5 5 C 1.54324 * 110.01249 * 67.52437 * 3 2 1 6 6 C 1.55156 * 102.94257 * 141.68092 * 5 3 2 7 7 H 1.08999 * 111.00492 * 206.42306 * 6 5 3 8 8 C 1.53005 * 111.00116 * 82.57598 * 6 5 3 9 9 C 1.55127 * 101.48859 * 324.33820 * 6 5 3 10 10 N 1.47024 * 109.88387 * 185.41514 * 3 2 1 11 11 C 1.34771 * 125.65336 * 61.44795 * 10 3 2 12 12 O 1.21591 * 119.99495 * 5.05262 * 11 10 3 13 13 N 1.34767 * 120.00324 * 185.05600 * 11 10 3 14 14 C 1.39948 * 120.00447 * 185.00538 * 13 11 10 15 15 C 1.38953 * 120.03733 * 212.76916 * 14 13 11 16 16 C 1.38157 * 120.06829 * 180.02562 * 15 14 13 17 17 C 1.38168 * 120.13959 * 0.02562 * 16 15 14 18 18 C 1.38909 * 120.06507 * 359.97438 * 17 16 15 19 19 O 1.35759 * 120.03282 * 179.97438 * 18 17 16 20 20 C 1.34832 * 116.99810 * 5.61873 * 19 18 17 21 21 H 1.08003 * 119.99904 * 5.30095 * 20 19 18 22 22 C 1.38651 * 120.00032 * 185.30234 * 20 19 18 23 23 N 1.31556 * 120.00039 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00049 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46938 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.46847 * 119.99881 * 24 22 20 27 27 H 1.48500 * 109.47046 * 239.99901 * 24 22 20 28 28 C 1.38713 * 120.03110 * 32.78163 * 14 13 11 29 29 H 1.08994 * 109.47195 * 304.71645 * 1 2 3 30 30 H 1.09002 * 109.46713 * 64.71793 * 1 2 3 31 31 H 1.08996 * 109.46737 * 184.71428 * 1 2 3 32 32 H 1.09004 * 109.47310 * 240.00054 * 2 1 3 33 33 H 1.08994 * 109.47469 * 119.99977 * 2 1 3 34 34 H 1.08997 * 110.72296 * 260.05065 * 5 3 2 35 35 H 1.08999 * 110.72043 * 23.32032 * 5 3 2 36 36 H 1.08997 * 109.47272 * 59.99950 * 8 6 5 37 37 H 1.08998 * 109.46850 * 180.02562 * 8 6 5 38 38 H 1.09000 * 109.47199 * 299.99763 * 8 6 5 39 39 H 1.09000 * 110.49606 * 278.45297 * 9 6 5 40 40 H 1.08996 * 110.34572 * 156.05640 * 9 6 5 41 41 H 0.97000 * 119.99980 * 5.00339 * 13 11 10 42 42 H 1.08005 * 119.96732 * 359.74111 * 15 14 13 43 43 H 1.08000 * 119.93371 * 179.97438 * 16 15 14 44 44 H 1.07999 * 119.97036 * 180.02562 * 17 16 15 45 45 H 0.97000 * 119.99990 * 179.97438 * 23 22 20 46 46 H 1.07993 * 120.07121 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5896 1.9947 -0.8248 5 6 1.6934 2.1252 1.3399 6 6 2.9500 2.9894 1.6249 7 1 3.0738 3.1581 2.6946 8 6 2.8863 4.3167 0.8664 9 6 4.0807 2.0820 1.0730 10 7 3.5044 1.4552 -0.1305 11 6 4.2042 0.9691 -1.1746 12 8 3.6204 0.5501 -2.1555 13 7 5.5510 0.9473 -1.1316 14 6 6.2807 0.5410 -2.2545 15 6 7.4893 -0.1257 -2.0949 16 6 8.2104 -0.5266 -3.2030 17 6 7.7328 -0.2658 -4.4731 18 6 6.5252 0.4003 -4.6393 19 8 6.0568 0.6567 -5.8874 20 6 6.7509 0.1376 -6.9203 21 1 7.5855 -0.5219 -6.7329 22 6 6.3934 0.4505 -8.2228 23 7 5.3766 1.2534 -8.4510 24 14 7.3546 -0.2692 -9.6538 25 1 8.4425 -1.1357 -9.1333 26 1 6.4441 -1.0752 -10.5062 27 1 7.9417 0.8316 -10.4593 28 6 5.7981 0.8036 -3.5282 29 1 -0.3633 0.5852 0.8447 30 1 -0.3633 0.4389 -0.9293 31 1 -0.3633 -1.0242 0.0845 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.8088 2.7534 1.2352 35 1 1.5497 1.3830 2.1251 36 1 2.0020 4.8719 1.1793 37 1 3.7794 4.9026 1.0837 38 1 2.8323 4.1210 -0.2045 39 1 4.3506 1.3207 1.8050 40 1 4.9522 2.6808 0.8085 41 1 6.0148 1.2133 -0.3222 42 1 7.8677 -0.3266 -1.1034 43 1 9.1497 -1.0443 -3.0764 44 1 8.2985 -0.5808 -5.3374 45 1 5.1267 1.4726 -9.3623 46 1 4.8593 1.3221 -3.6550 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072508207.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:17 Heat of formation + Delta-G solvation = -30.581431 kcal Electronic energy + Delta-G solvation = -26788.443545 eV Core-core repulsion = 23064.771804 eV Total energy + Delta-G solvation = -3723.671741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.73236 -39.15036 -38.06982 -36.34731 -34.35375 -33.59880 -32.54554 -32.16875 -29.40196 -28.68848 -27.95578 -26.89746 -25.24791 -24.24319 -22.50716 -21.68602 -21.20241 -20.24253 -19.47404 -18.30947 -17.86325 -16.98051 -16.29596 -15.61016 -15.13010 -15.04027 -14.97341 -14.55518 -14.11350 -13.98679 -13.87329 -13.74845 -13.54369 -13.42396 -13.05226 -12.72182 -12.56496 -12.40176 -12.29763 -11.81770 -11.69941 -11.63913 -11.48335 -11.30235 -11.18386 -11.08245 -11.00448 -10.91949 -10.68275 -10.53709 -10.39603 -9.83552 -9.67961 -9.19376 -8.76651 -8.63912 -7.56534 -7.10710 -6.36616 -3.95384 2.15653 2.41905 2.61885 3.17255 3.18570 3.24582 3.40766 3.92112 4.05716 4.14390 4.34745 4.55719 4.67888 4.79354 4.95914 5.07951 5.18692 5.18904 5.19512 5.25595 5.33477 5.36653 5.41097 5.53014 5.62497 5.66772 5.68543 5.72073 5.85364 5.89188 5.94241 6.01782 6.08412 6.17413 6.18621 6.30847 6.36679 6.47961 6.69679 6.94738 7.10015 7.14930 7.31316 7.41086 7.55475 7.89209 8.06577 8.09188 8.76168 9.08575 9.81133 10.81591 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017238 B = 0.002982 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.963601 B = 9387.285373 C =10032.260822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.158 3.842 4 H 0.076 0.924 5 C -0.123 4.123 6 C -0.103 4.103 7 H 0.089 0.911 8 C -0.145 4.145 9 C 0.100 3.900 10 N -0.633 5.633 11 C 0.717 3.283 12 O -0.555 6.555 13 N -0.680 5.680 14 C 0.197 3.803 15 C -0.239 4.239 16 C -0.057 4.057 17 C -0.247 4.247 18 C 0.169 3.831 19 O -0.175 6.175 20 C -0.390 4.390 21 H 0.093 0.907 22 C 0.038 3.962 23 N -0.861 5.861 24 Si 0.941 3.059 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.277 1.277 28 C -0.188 4.188 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.400 0.600 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.127 0.873 45 H 0.269 0.731 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.035 2.569 22.711 23.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C 0.055 3.945 4 H 0.094 0.906 5 C -0.161 4.161 6 C -0.122 4.122 7 H 0.107 0.893 8 C -0.202 4.202 9 C -0.024 4.024 10 N -0.372 5.372 11 C 0.420 3.580 12 O -0.430 6.430 13 N -0.327 5.327 14 C 0.103 3.897 15 C -0.260 4.260 16 C -0.076 4.076 17 C -0.267 4.267 18 C 0.114 3.886 19 O -0.078 6.078 20 C -0.466 4.466 21 H 0.110 0.890 22 C -0.166 4.166 23 N -0.496 5.496 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.210 4.210 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.234 0.766 42 H 0.125 0.875 43 H 0.129 0.871 44 H 0.145 0.855 45 H 0.079 0.921 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.789 2.480 21.621 22.283 hybrid contribution 0.854 -0.268 -0.211 0.920 sum -3.934 2.212 21.410 21.881 Atomic orbital electron populations 1.21707 0.95207 1.01741 1.01825 1.21927 0.96096 0.96405 1.03172 1.21421 0.78996 0.96453 0.97671 0.90611 1.22821 0.98003 0.98830 0.96433 1.22351 0.94593 0.94970 1.00275 0.89251 1.21760 1.01875 0.95566 1.01019 1.22404 0.96966 0.95583 0.87405 1.47650 1.06889 1.63633 1.19045 1.15446 0.81351 0.78971 0.82238 1.91022 1.68646 1.51912 1.31370 1.42538 1.04497 1.70036 1.15673 1.16951 0.91501 0.96363 0.84914 1.20207 0.98074 1.09500 0.98211 1.20474 0.97972 0.97377 0.91809 1.21165 0.98868 1.09069 0.97625 1.19126 0.90929 0.91985 0.86530 1.84008 1.48599 1.65142 1.10042 1.21385 1.14472 1.27434 0.83301 0.89001 1.25297 0.96888 0.96659 0.97779 1.70066 1.25250 1.33028 1.21295 0.85648 0.79006 0.78610 0.80149 1.19093 1.20185 1.20216 1.20057 1.02801 1.09241 0.88874 0.92801 0.92434 0.92626 0.90204 0.92208 0.89898 0.90376 0.92242 0.92365 0.92076 0.91555 0.90822 0.76563 0.87533 0.87087 0.85495 0.92147 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.83 37.16 0.37 -1.00 16 2 C -0.14 -1.58 5.41 -26.73 -0.14 -1.72 16 3 C 0.16 1.76 2.54 -66.95 -0.17 1.59 16 4 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 5 C -0.12 -0.89 5.06 -24.90 -0.13 -1.01 16 6 C -0.10 -0.69 3.72 -88.35 -0.33 -1.02 16 7 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 8 C -0.14 -1.08 9.22 37.16 0.34 -0.74 16 9 C 0.10 0.83 5.92 -2.41 -0.01 0.82 16 10 N -0.63 -7.90 3.05 -168.55 -0.51 -8.42 16 11 C 0.72 12.26 7.95 -86.93 -0.69 11.57 16 12 O -0.56 -12.21 13.14 5.29 0.07 -12.14 16 13 N -0.68 -10.77 5.28 -14.24 -0.08 -10.85 16 14 C 0.20 3.87 6.29 -83.71 -0.53 3.34 16 15 C -0.24 -4.26 9.96 -39.35 -0.39 -4.65 16 16 C -0.06 -1.08 10.03 -39.64 -0.40 -1.48 16 17 C -0.25 -5.62 9.13 -39.36 -0.36 -5.98 16 18 C 0.17 4.39 6.64 -39.14 -0.26 4.13 16 19 O -0.17 -5.31 9.76 0.01 0.00 -5.31 16 20 C -0.39 -11.34 9.44 30.88 0.29 -11.05 16 21 H 0.09 2.47 5.29 -52.48 -0.28 2.19 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -26.24 13.67 55.48 0.76 -25.48 16 24 Si 0.94 21.17 29.55 -169.99 -5.02 16.14 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 28 C -0.19 -4.52 8.60 -39.21 -0.34 -4.86 16 29 H 0.05 0.40 7.36 -51.93 -0.38 0.01 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 1.22 6.86 -51.93 -0.36 0.87 16 33 H 0.06 0.63 8.02 -51.93 -0.42 0.21 16 34 H 0.08 0.52 8.05 -51.93 -0.42 0.10 16 35 H 0.08 0.49 7.77 -51.93 -0.40 0.09 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.60 7.91 -51.93 -0.41 0.19 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.57 7.50 -51.93 -0.39 0.19 16 41 H 0.40 4.72 7.49 -40.82 -0.31 4.42 16 42 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 43 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 44 H 0.13 2.86 5.70 -52.49 -0.30 2.56 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.13 3.39 6.36 -52.49 -0.33 3.06 16 LS Contribution 370.73 15.07 5.59 5.59 Total: -1.00 -35.06 370.73 -8.97 -44.04 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.93 Total: 7.50 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -2.84 Total: -11.08 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.17 Total: -44.74 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: 0.07 Total: -17.45 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.06 -8.97 -44.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072508207.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.454 kcal (2) G-P(sol) polarization free energy of solvation -35.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds