Wall clock time and date at job start Tue Mar 31 2020 13:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47179 * 2 1 4 4 H 1.09000 * 109.99641 * 53.61898 * 3 2 1 5 5 C 1.54327 * 109.98987 * 292.57772 * 3 2 1 6 6 C 1.55163 * 103.02126 * 218.66303 * 5 3 2 7 7 H 1.09003 * 110.99795 * 153.38101 * 6 5 3 8 8 C 1.53000 * 111.00186 * 277.23305 * 6 5 3 9 9 C 1.54914 * 101.57714 * 35.31004 * 6 5 3 10 10 N 1.47021 * 109.88563 * 174.71091 * 3 2 1 11 11 C 1.34777 * 125.64756 * 298.40006 * 10 3 2 12 12 O 1.21585 * 119.99969 * 4.56416 * 11 10 3 13 13 N 1.34776 * 120.00015 * 184.56584 * 11 10 3 14 14 C 1.39943 * 120.00180 * 175.01258 * 13 11 10 15 15 C 1.38966 * 120.03282 * 327.27942 * 14 13 11 16 16 C 1.38163 * 120.06480 * 180.02562 * 15 14 13 17 17 C 1.38166 * 120.13783 * 359.78065 * 16 15 14 18 18 C 1.38913 * 120.06935 * 0.47710 * 17 16 15 19 19 O 1.35754 * 120.03130 * 179.78636 * 18 17 16 20 20 C 1.34831 * 116.99632 * 185.16637 * 19 18 17 21 21 H 1.07995 * 120.00152 * 354.87742 * 20 19 18 22 22 C 1.38660 * 119.99799 * 174.87658 * 20 19 18 23 23 N 1.31553 * 119.99703 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47348 * 269.99903 * 24 22 20 26 26 H 1.48500 * 109.46862 * 30.00156 * 24 22 20 27 27 H 1.48505 * 109.46782 * 149.99917 * 24 22 20 28 28 C 1.38702 * 120.03624 * 147.29870 * 14 13 11 29 29 H 1.08998 * 109.47014 * 185.14861 * 1 2 3 30 30 H 1.08997 * 109.46866 * 305.15131 * 1 2 3 31 31 H 1.09001 * 109.46613 * 65.14907 * 1 2 3 32 32 H 1.08998 * 109.47513 * 240.00064 * 2 1 3 33 33 H 1.09004 * 109.47353 * 119.99540 * 2 1 3 34 34 H 1.09007 * 110.85040 * 100.20107 * 5 3 2 35 35 H 1.09001 * 110.66863 * 337.04965 * 5 3 2 36 36 H 1.09010 * 109.46589 * 173.64997 * 8 6 5 37 37 H 1.08994 * 109.47146 * 293.64345 * 8 6 5 38 38 H 1.08995 * 109.47329 * 53.65565 * 8 6 5 39 39 H 1.08998 * 110.35947 * 204.15248 * 9 6 5 40 40 H 1.08994 * 110.45746 * 81.87744 * 9 6 5 41 41 H 0.96996 * 120.00155 * 355.01658 * 13 11 10 42 42 H 1.07998 * 119.96762 * 0.02562 * 15 14 13 43 43 H 1.07996 * 119.93081 * 180.02562 * 16 15 14 44 44 H 1.08001 * 119.96418 * 180.23139 * 17 16 15 45 45 H 0.96999 * 119.99565 * 180.02562 * 23 22 20 46 46 H 1.07995 * 120.07041 * 359.96214 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9965 0.8246 5 6 1.6909 2.1255 -1.3391 6 6 2.9498 2.9838 -1.6325 7 1 3.0703 3.1472 -2.7035 8 6 2.8939 4.3146 -0.8796 9 6 4.0788 2.0792 -1.0784 10 7 3.5046 1.4551 0.1274 11 6 4.2065 0.9708 1.1712 12 8 3.6322 0.3959 2.0756 13 7 5.5449 1.1238 1.2124 14 6 6.2615 0.7147 2.3427 15 6 5.6806 0.7985 3.6024 16 6 6.3877 0.3953 4.7188 17 6 7.6721 -0.0964 4.5863 18 6 8.2602 -0.1776 3.3304 19 8 9.5238 -0.6568 3.2016 20 6 10.0739 -0.6093 1.9715 21 1 9.4843 -0.2805 1.1286 22 6 11.3967 -0.9826 1.7888 23 7 11.9333 -0.9368 0.5886 24 14 12.4164 -1.5520 3.2468 25 1 13.0912 -0.3829 3.8657 26 1 11.5306 -2.1993 4.2476 27 1 13.4378 -2.5265 2.7860 28 6 7.5523 0.2257 2.2069 29 1 -0.3633 -1.0235 0.0922 30 1 -0.3633 0.5917 0.8402 31 1 -0.3632 0.4319 -0.9325 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.8092 2.7578 -1.2339 35 1 1.5397 1.3824 -2.1221 36 1 3.8359 4.8469 -1.0123 37 1 2.0764 4.9196 -1.2715 38 1 2.7299 4.1253 0.1811 39 1 4.9509 2.6784 -0.8168 40 1 4.3487 1.3164 -1.8086 41 1 6.0115 1.5175 0.4587 42 1 4.6756 1.1791 3.7087 43 1 5.9341 0.4610 5.6967 44 1 8.2209 -0.4142 5.4605 45 1 12.8586 -1.1983 0.4608 46 1 8.0057 0.1593 1.2291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072508209.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:20 Heat of formation + Delta-G solvation = -30.191267 kcal Electronic energy + Delta-G solvation = -26772.942361 eV Core-core repulsion = 23049.287538 eV Total energy + Delta-G solvation = -3723.654823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.81009 -39.30501 -38.23431 -36.43200 -34.52783 -33.69161 -32.64700 -32.28383 -29.43366 -28.85607 -28.17173 -26.93680 -25.20896 -24.32632 -22.49425 -21.74396 -21.30651 -20.26019 -19.47769 -18.41514 -17.72266 -17.41706 -16.31582 -15.64200 -15.30869 -15.26419 -14.98392 -14.50686 -14.29478 -13.94136 -13.83642 -13.71018 -13.65594 -13.59558 -13.07865 -12.99278 -12.62339 -12.40672 -12.27491 -12.12206 -11.86743 -11.77858 -11.59286 -11.37414 -11.21753 -11.13851 -10.98151 -10.87715 -10.75638 -10.58753 -10.26177 -9.95588 -9.58687 -9.46367 -8.83558 -8.71227 -7.73247 -7.23250 -6.41044 -4.08016 2.00971 2.32840 2.57286 3.23071 3.26507 3.31618 3.42450 3.90924 4.12501 4.25097 4.31232 4.52009 4.57304 4.75879 4.89497 4.91916 5.01840 5.10928 5.15320 5.19714 5.21945 5.29211 5.34739 5.50358 5.57097 5.61888 5.65293 5.69515 5.79412 5.87419 5.95098 5.96720 6.01417 6.03685 6.11432 6.21918 6.25125 6.36538 6.51614 6.85253 6.96163 7.19524 7.24648 7.30381 7.64282 7.80191 8.00191 8.05045 8.66102 8.94829 9.57839 10.66789 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018336 B = 0.002972 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.643285 B = 9419.913236 C =10105.888312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.161 3.839 4 H 0.073 0.927 5 C -0.123 4.123 6 C -0.104 4.104 7 H 0.091 0.909 8 C -0.144 4.144 9 C 0.098 3.902 10 N -0.632 5.632 11 C 0.723 3.277 12 O -0.567 6.567 13 N -0.680 5.680 14 C 0.200 3.800 15 C -0.198 4.198 16 C -0.064 4.064 17 C -0.203 4.203 18 C 0.176 3.824 19 O -0.217 6.217 20 C -0.389 4.389 21 H 0.104 0.896 22 C 0.063 3.937 23 N -0.882 5.882 24 Si 0.905 3.095 25 H -0.273 1.273 26 H -0.259 1.259 27 H -0.283 1.283 28 C -0.247 4.247 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.402 0.598 42 H 0.123 0.877 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.279 0.721 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.852 8.610 -5.236 22.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C 0.057 3.943 4 H 0.091 0.909 5 C -0.161 4.161 6 C -0.123 4.123 7 H 0.109 0.891 8 C -0.201 4.201 9 C -0.025 4.025 10 N -0.371 5.371 11 C 0.425 3.575 12 O -0.443 6.443 13 N -0.327 5.327 14 C 0.106 3.894 15 C -0.219 4.219 16 C -0.083 4.083 17 C -0.223 4.223 18 C 0.123 3.877 19 O -0.122 6.122 20 C -0.465 4.465 21 H 0.122 0.878 22 C -0.140 4.140 23 N -0.520 5.520 24 Si 0.731 3.269 25 H -0.199 1.199 26 H -0.183 1.183 27 H -0.209 1.209 28 C -0.269 4.269 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.238 0.762 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.089 0.911 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.902 8.038 -4.502 21.931 hybrid contribution 0.872 -0.066 -0.229 0.904 sum -19.030 7.971 -4.731 21.168 Atomic orbital electron populations 1.21703 0.95342 1.01837 1.01501 1.21963 0.95878 0.96388 1.03587 1.21421 0.78875 0.96442 0.97585 0.90906 1.22823 0.97945 0.98889 0.96489 1.22322 0.94549 0.94895 1.00492 0.89071 1.21756 1.02021 0.95630 1.00687 1.22405 0.96895 0.95869 0.87325 1.47629 1.06910 1.63753 1.18791 1.15364 0.81221 0.79241 0.81639 1.90922 1.69072 1.46441 1.37868 1.42639 1.05543 1.64879 1.19657 1.17206 0.90719 0.96290 0.85191 1.20661 1.01198 1.09406 0.90620 1.20524 0.93125 0.97022 0.97589 1.20229 0.96672 1.10227 0.95194 1.18771 0.85074 0.91195 0.92627 1.83602 1.23827 1.71297 1.33460 1.20725 0.96361 1.46389 0.82991 0.87826 1.24452 0.95811 0.96168 0.97535 1.69642 1.14869 1.46484 1.21023 0.86183 0.79563 0.79034 0.82149 1.19895 1.18284 1.20853 1.20873 0.95364 1.10424 1.00230 0.92608 0.92659 0.92872 0.92067 0.89849 0.89935 0.90316 0.92246 0.92295 0.92330 0.90739 0.91212 0.76222 0.85921 0.86501 0.86443 0.91113 0.84761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.69 37.16 0.36 -0.84 16 2 C -0.14 -1.50 5.41 -26.73 -0.14 -1.64 16 3 C 0.16 1.62 2.55 -66.95 -0.17 1.45 16 4 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 5 C -0.12 -0.85 5.22 -24.89 -0.13 -0.97 16 6 C -0.10 -0.69 3.72 -88.47 -0.33 -1.02 16 7 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 8 C -0.14 -0.98 9.24 37.16 0.34 -0.64 16 9 C 0.10 0.87 6.09 -2.53 -0.02 0.86 16 10 N -0.63 -7.59 3.05 -168.69 -0.51 -8.10 16 11 C 0.72 11.64 8.05 -86.92 -0.70 10.94 16 12 O -0.57 -10.94 12.77 5.29 0.07 -10.87 16 13 N -0.68 -11.06 5.30 -14.24 -0.08 -11.13 16 14 C 0.20 3.91 6.29 -83.71 -0.53 3.39 16 15 C -0.20 -3.81 8.66 -39.34 -0.34 -4.15 16 16 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 17 C -0.20 -4.17 9.99 -39.36 -0.39 -4.56 16 18 C 0.18 4.13 6.65 -39.13 -0.26 3.87 16 19 O -0.22 -5.75 8.58 0.03 0.00 -5.75 16 20 C -0.39 -10.93 9.95 30.89 0.31 -10.62 16 21 H 0.10 2.95 5.43 -52.49 -0.29 2.67 16 22 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 23 N -0.88 -25.33 13.96 55.48 0.77 -24.56 16 24 Si 0.91 21.71 28.62 -169.99 -4.86 16.85 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 28 C -0.25 -5.41 9.08 -39.21 -0.36 -5.77 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 32 H 0.06 0.65 8.02 -51.93 -0.42 0.23 16 33 H 0.08 1.19 6.56 -51.93 -0.34 0.85 16 34 H 0.08 0.46 8.05 -51.93 -0.42 0.04 16 35 H 0.08 0.50 7.77 -51.93 -0.40 0.09 16 36 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.49 7.83 -51.93 -0.41 0.09 16 39 H 0.07 0.63 7.11 -51.93 -0.37 0.26 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.40 5.51 7.25 -40.82 -0.30 5.21 16 42 H 0.12 2.35 6.35 -52.49 -0.33 2.02 16 43 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.12 2.22 8.06 -52.49 -0.42 1.79 16 45 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.13 3.02 5.64 -52.49 -0.30 2.73 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -31.94 368.77 -8.80 -40.74 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.90 Total: 6.88 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -2.85 Total: -9.62 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.18 Total: -43.79 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.07 Total: -16.62 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.86 Total: 16.85 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.94 -8.80 -40.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072508209.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.550 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds