Wall clock time and date at job start Tue Mar 31 2020 12:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46997 * 2 1 4 4 C 1.53002 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.08998 * 115.54686 * 29.32813 * 4 3 2 6 6 C 1.53069 * 117.53319 * 243.61769 * 4 3 2 7 7 C 1.52994 * 117.49842 * 174.99870 * 4 3 2 8 8 H 1.09007 * 117.50027 * 215.02635 * 7 4 3 9 9 C 1.50697 * 117.50168 * 0.02636 * 7 4 3 10 10 O 1.21282 * 119.99778 * 359.91386 * 9 7 4 11 11 N 1.34781 * 120.00308 * 179.91416 * 9 7 4 12 12 C 1.39576 * 120.00123 * 180.02562 * 11 9 7 13 13 N 1.32282 * 119.72657 * 0.26367 * 12 11 9 14 14 C 1.31950 * 121.68963 * 180.31797 * 13 12 11 15 15 C 1.38092 * 120.95505 * 359.69972 * 14 13 12 16 16 C 1.38777 * 119.35368 * 0.02562 * 15 14 13 17 17 C 1.38799 * 118.44572 * 0.02562 * 16 15 14 18 18 O 1.35983 * 120.49639 * 180.02562 * 17 16 15 19 19 C 1.42903 * 116.99692 * 0.02562 * 18 17 16 20 20 C 1.53000 * 109.46726 * 180.02562 * 19 18 17 21 21 C 1.50706 * 109.46735 * 180.02562 * 20 19 18 22 22 H 1.07996 * 119.99928 * 359.97438 * 21 20 19 23 23 C 1.37880 * 119.99611 * 179.97438 * 21 20 19 24 24 N 1.31511 * 120.00327 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99743 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46828 * 90.00241 * 25 23 21 27 27 H 1.48494 * 109.47178 * 209.99936 * 25 23 21 28 28 H 1.48500 * 109.47075 * 330.00183 * 25 23 21 29 29 H 1.09001 * 109.47038 * 299.99906 * 1 2 3 30 30 H 1.09001 * 109.46876 * 59.99907 * 1 2 3 31 31 H 1.08998 * 109.46674 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47314 * 239.99661 * 2 1 3 33 33 H 1.09003 * 109.47119 * 119.99361 * 2 1 3 34 34 H 1.09001 * 109.47150 * 60.00162 * 3 2 1 35 35 H 1.09001 * 109.46943 * 300.00086 * 3 2 1 36 36 H 1.08998 * 117.49617 * 145.04694 * 6 4 3 37 37 H 1.09001 * 117.51614 * 0.02562 * 6 4 3 38 38 H 0.96994 * 119.99643 * 359.97438 * 11 9 7 39 39 H 1.08001 * 119.52606 * 179.72411 * 14 13 12 40 40 H 1.08000 * 120.32126 * 179.97438 * 15 14 13 41 41 H 1.07992 * 120.77678 * 180.02562 * 16 15 14 42 42 H 1.09002 * 109.47382 * 59.99808 * 19 18 17 43 43 H 1.09001 * 109.46938 * 299.99794 * 19 18 17 44 44 H 1.09001 * 109.47194 * 299.99575 * 20 19 18 45 45 H 1.08992 * 109.47399 * 59.99748 * 20 19 18 46 46 H 0.97000 * 120.00354 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4426 0.0006 5 1 4.0403 0.5852 -0.4807 6 6 4.2771 2.0459 1.2168 7 6 4.2765 2.7945 -0.1176 8 1 5.2114 2.8267 -0.6771 9 6 3.4121 4.0243 -0.2251 10 8 2.2039 3.9188 -0.2175 11 7 3.9816 5.2413 -0.3298 12 6 3.1810 6.3804 -0.4289 13 7 1.8638 6.2596 -0.4142 14 6 1.0704 7.3093 -0.5116 15 6 1.5894 8.5837 -0.6272 16 6 2.9660 8.7589 -0.6414 17 6 3.7764 7.6368 -0.5384 18 8 5.1306 7.7603 -0.5473 19 6 5.6606 9.0821 -0.6656 20 6 7.1894 9.0209 -0.6582 21 6 7.7484 10.4150 -0.7823 22 1 7.0801 11.2598 -0.8592 23 6 9.1130 10.6116 -0.7977 24 7 9.9268 9.5827 -0.7036 25 14 9.8060 12.3394 -0.9522 26 1 9.9873 12.9229 0.4013 27 1 11.1167 12.2867 -1.6481 28 1 8.8648 13.1822 -1.7326 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 5.2123 1.5853 1.5350 37 1 3.6523 2.4426 2.0171 38 1 4.9479 5.3257 -0.3355 39 1 -0.0006 7.1699 -0.5004 40 1 0.9305 9.4357 -0.7067 41 1 3.3967 9.7452 -0.7304 42 1 5.3168 9.6878 0.1728 43 1 5.3197 9.5280 -1.5999 44 1 7.5307 8.5748 0.2759 45 1 7.5328 8.4153 -1.4968 46 1 10.8868 9.7211 -0.7141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079939201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:36 Heat of formation + Delta-G solvation = -22.174357 kcal Electronic energy + Delta-G solvation = -25864.704869 eV Core-core repulsion = 22141.397686 eV Total energy + Delta-G solvation = -3723.307183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.93719 -39.75190 -37.88627 -37.01108 -34.70777 -34.00770 -33.48054 -31.63365 -30.61699 -29.19710 -27.51277 -25.47270 -24.95987 -23.16557 -22.56201 -21.99426 -21.02798 -20.75482 -19.86069 -18.19934 -17.40528 -17.28713 -16.17024 -16.00862 -15.75188 -15.42250 -15.00706 -14.87441 -14.64201 -14.53722 -14.31485 -13.93389 -13.47142 -13.26848 -13.04376 -12.82705 -12.42983 -12.41351 -12.22374 -12.02559 -11.93278 -11.40400 -11.21156 -11.07491 -11.00103 -10.98666 -10.72595 -10.68921 -10.27624 -10.15393 -10.05499 -9.93689 -9.75988 -9.41282 -9.20663 -8.93507 -8.53122 -7.65037 -6.18744 -4.23715 1.20471 1.45064 2.59164 2.88265 3.21926 3.28055 3.30326 3.53100 3.64454 4.03040 4.30169 4.33179 4.43837 4.69345 4.75122 4.91464 4.95214 4.96496 5.06385 5.10851 5.16604 5.18102 5.30654 5.37645 5.46615 5.55212 5.70031 5.73845 5.74581 5.81983 5.85828 5.89293 5.90449 6.06312 6.09532 6.18974 6.24346 6.36396 6.48790 6.53875 6.64677 7.30359 7.34257 7.51843 7.63627 7.84895 8.09450 8.13606 8.38755 8.81473 9.41217 10.92645 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.002532 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.544922 B =11057.972089 C =12540.153665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.082 4.082 4 C -0.114 4.114 5 H 0.112 0.888 6 C -0.150 4.150 7 C -0.193 4.193 8 H 0.126 0.874 9 C 0.533 3.467 10 O -0.475 6.475 11 N -0.649 5.649 12 C 0.329 3.671 13 N -0.443 5.443 14 C 0.074 3.926 15 C -0.161 4.161 16 C -0.148 4.148 17 C 0.067 3.933 18 O -0.316 6.316 19 C 0.066 3.934 20 C 0.027 3.973 21 C -0.528 4.528 22 H 0.058 0.942 23 C 0.061 3.939 24 N -0.889 5.889 25 Si 0.899 3.101 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.424 0.576 39 H 0.156 0.844 40 H 0.134 0.866 41 H 0.145 0.855 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.155 -13.870 1.595 20.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.119 4.119 4 C -0.132 4.132 5 H 0.130 0.870 6 C -0.187 4.187 7 C -0.214 4.214 8 H 0.144 0.856 9 C 0.320 3.680 10 O -0.345 6.345 11 N -0.297 5.297 12 C 0.096 3.904 13 N -0.159 5.159 14 C -0.082 4.082 15 C -0.182 4.182 16 C -0.175 4.175 17 C 0.015 3.985 18 O -0.228 6.228 19 C -0.008 4.008 20 C -0.011 4.011 21 C -0.566 4.566 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.526 5.526 25 Si 0.726 3.274 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.197 1.197 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.262 0.738 39 H 0.173 0.827 40 H 0.152 0.848 41 H 0.162 0.838 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.047 0.953 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.011 -15.051 1.698 22.040 hybrid contribution 1.476 2.283 -0.239 2.729 sum -14.535 -12.768 1.459 19.401 Atomic orbital electron populations 1.21743 0.96004 1.01043 1.02044 1.21585 0.95837 0.97364 1.01430 1.21279 0.91036 0.95477 1.04113 1.22471 0.96189 0.93714 1.00839 0.87035 1.23110 1.03125 1.01921 0.90565 1.22281 1.02244 0.92048 1.04877 0.85618 1.19849 0.88540 0.83114 0.76539 1.90778 1.13741 1.85200 1.44809 1.43479 1.10620 1.04023 1.71532 1.17829 0.88175 0.83799 1.00570 1.67624 1.01260 1.33279 1.13696 1.22405 0.99441 0.87363 0.99017 1.21887 0.94906 0.98843 1.02575 1.21606 0.94064 0.98585 1.03236 1.19608 0.85338 0.93014 1.00526 1.86105 1.15173 1.34399 1.87152 1.23394 0.98680 0.79055 0.99651 1.19126 0.84904 0.98145 0.98881 1.20946 0.91766 0.91906 1.52028 0.92336 1.24984 0.96990 0.97336 0.94827 1.69960 1.03404 1.29931 1.49354 0.86480 0.78516 0.84040 0.78321 1.20462 1.21011 1.19745 0.92783 0.92697 0.93175 0.92408 0.92389 0.91221 0.90176 0.87706 0.88216 0.73823 0.82681 0.84832 0.83774 0.92956 0.92959 0.95351 0.95347 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.12 -1.07 5.89 -26.73 -0.16 -1.23 16 3 C -0.08 -0.87 3.76 -26.73 -0.10 -0.97 16 4 C -0.11 -1.07 5.74 -90.59 -0.52 -1.59 16 5 H 0.11 0.87 8.07 -51.93 -0.42 0.45 16 6 C -0.15 -1.37 9.88 -26.69 -0.26 -1.63 16 7 C -0.19 -2.04 6.19 -91.77 -0.57 -2.61 16 8 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 9 C 0.53 7.58 7.56 -10.98 -0.08 7.50 16 10 O -0.48 -7.89 11.36 5.56 0.06 -7.83 16 11 N -0.65 -9.62 5.39 -11.29 -0.06 -9.68 16 12 C 0.33 5.48 7.45 -154.43 -1.15 4.33 16 13 N -0.44 -7.38 7.88 -12.22 -0.10 -7.47 16 14 C 0.07 1.01 11.17 -17.55 -0.20 0.82 16 15 C -0.16 -2.02 10.10 -39.44 -0.40 -2.42 16 16 C -0.15 -2.17 9.14 -39.17 -0.36 -2.53 16 17 C 0.07 1.12 6.72 -38.92 -0.26 0.86 16 18 O -0.32 -5.85 9.39 -19.69 -0.18 -6.03 16 19 C 0.07 1.31 4.70 37.16 0.17 1.48 16 20 C 0.03 0.65 5.34 -27.88 -0.15 0.51 16 21 C -0.53 -14.11 9.11 -34.44 -0.31 -14.42 16 22 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 23 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 24 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 25 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.86 7.30 -51.93 -0.38 0.48 16 35 H 0.08 1.03 6.92 -51.93 -0.36 0.67 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.99 8.04 -51.93 -0.42 0.58 16 38 H 0.42 5.69 8.04 -40.82 -0.33 5.36 16 39 H 0.16 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.14 1.96 6.44 -52.49 -0.34 1.62 16 42 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 43 H 0.05 0.98 7.70 -51.93 -0.40 0.59 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -31.23 381.93 -10.11 -41.34 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.23 Total: 4.31 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -4.07 Total: -11.25 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.58 Total: -41.93 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.12 Total: -13.86 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.23 -10.11 -41.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079939201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.169 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds