Wall clock time and date at job start Tue Mar 31 2020 12:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46997 * 2 1 4 4 C 1.53002 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.08998 * 115.54686 * 29.32813 * 4 3 2 6 6 C 1.53069 * 117.53319 * 243.61769 * 4 3 2 7 7 C 1.52994 * 117.49842 * 174.99870 * 4 3 2 8 8 H 1.09007 * 117.50027 * 215.02635 * 7 4 3 9 9 C 1.50697 * 117.50168 * 0.02636 * 7 4 3 10 10 O 1.21282 * 119.99778 * 359.91386 * 9 7 4 11 11 N 1.34781 * 120.00308 * 179.91416 * 9 7 4 12 12 C 1.39576 * 120.00123 * 180.02562 * 11 9 7 13 13 N 1.32282 * 119.72657 * 0.26367 * 12 11 9 14 14 C 1.31950 * 121.68963 * 180.31797 * 13 12 11 15 15 C 1.38092 * 120.95505 * 359.69972 * 14 13 12 16 16 C 1.38777 * 119.35368 * 0.02562 * 15 14 13 17 17 C 1.38799 * 118.44572 * 0.02562 * 16 15 14 18 18 O 1.35983 * 120.49639 * 180.02562 * 17 16 15 19 19 C 1.42903 * 116.99692 * 0.02562 * 18 17 16 20 20 C 1.53000 * 109.46726 * 180.02562 * 19 18 17 21 21 C 1.50706 * 109.46735 * 180.02562 * 20 19 18 22 22 H 1.07996 * 119.99928 * 359.97438 * 21 20 19 23 23 C 1.37880 * 119.99611 * 179.97438 * 21 20 19 24 24 N 1.31511 * 120.00327 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99743 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46828 * 90.00241 * 25 23 21 27 27 H 1.48494 * 109.47178 * 209.99936 * 25 23 21 28 28 H 1.48500 * 109.47075 * 330.00183 * 25 23 21 29 29 H 1.09001 * 109.47038 * 299.99906 * 1 2 3 30 30 H 1.09001 * 109.46876 * 59.99907 * 1 2 3 31 31 H 1.08998 * 109.46674 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47314 * 239.99661 * 2 1 3 33 33 H 1.09003 * 109.47119 * 119.99361 * 2 1 3 34 34 H 1.09001 * 109.47150 * 60.00162 * 3 2 1 35 35 H 1.09001 * 109.46943 * 300.00086 * 3 2 1 36 36 H 1.08998 * 117.49617 * 145.04694 * 6 4 3 37 37 H 1.09001 * 117.51614 * 0.02562 * 6 4 3 38 38 H 0.96994 * 119.99643 * 359.97438 * 11 9 7 39 39 H 1.08001 * 119.52606 * 179.72411 * 14 13 12 40 40 H 1.08000 * 120.32126 * 179.97438 * 15 14 13 41 41 H 1.07992 * 120.77678 * 180.02562 * 16 15 14 42 42 H 1.09002 * 109.47382 * 59.99808 * 19 18 17 43 43 H 1.09001 * 109.46938 * 299.99794 * 19 18 17 44 44 H 1.09001 * 109.47194 * 299.99575 * 20 19 18 45 45 H 1.08992 * 109.47399 * 59.99748 * 20 19 18 46 46 H 0.97000 * 120.00354 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4426 0.0006 5 1 4.0403 0.5852 -0.4807 6 6 4.2771 2.0459 1.2168 7 6 4.2765 2.7945 -0.1176 8 1 5.2114 2.8267 -0.6771 9 6 3.4121 4.0243 -0.2251 10 8 2.2039 3.9188 -0.2175 11 7 3.9816 5.2413 -0.3298 12 6 3.1810 6.3804 -0.4289 13 7 1.8638 6.2596 -0.4142 14 6 1.0704 7.3093 -0.5116 15 6 1.5894 8.5837 -0.6272 16 6 2.9660 8.7589 -0.6414 17 6 3.7764 7.6368 -0.5384 18 8 5.1306 7.7603 -0.5473 19 6 5.6606 9.0821 -0.6656 20 6 7.1894 9.0209 -0.6582 21 6 7.7484 10.4150 -0.7823 22 1 7.0801 11.2598 -0.8592 23 6 9.1130 10.6116 -0.7977 24 7 9.9268 9.5827 -0.7036 25 14 9.8060 12.3394 -0.9522 26 1 9.9873 12.9229 0.4013 27 1 11.1167 12.2867 -1.6481 28 1 8.8648 13.1822 -1.7326 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 5.2123 1.5853 1.5350 37 1 3.6523 2.4426 2.0171 38 1 4.9479 5.3257 -0.3355 39 1 -0.0006 7.1699 -0.5004 40 1 0.9305 9.4357 -0.7067 41 1 3.3967 9.7452 -0.7304 42 1 5.3168 9.6878 0.1728 43 1 5.3197 9.5280 -1.5999 44 1 7.5307 8.5748 0.2759 45 1 7.5328 8.4153 -1.4968 46 1 10.8868 9.7211 -0.7141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079939201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:35 Heat of formation + Delta-G solvation = -38.771007 kcal Electronic energy + Delta-G solvation = -25865.424554 eV Core-core repulsion = 22141.397686 eV Total energy + Delta-G solvation = -3724.026868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.09026 -40.83811 -39.20449 -37.95262 -35.88163 -35.44365 -34.75546 -32.91038 -32.27440 -30.50456 -28.31406 -27.17635 -26.06645 -24.55335 -23.64858 -22.85733 -22.46404 -21.69163 -20.93019 -19.50906 -18.74682 -18.33603 -18.01499 -17.20000 -17.07464 -16.52164 -16.36743 -15.98771 -15.91838 -15.58023 -15.25400 -15.16845 -14.70169 -14.36387 -14.20686 -14.03948 -13.88465 -13.62970 -13.30534 -13.25703 -12.98596 -12.80861 -12.75115 -12.44947 -12.15033 -11.97740 -11.85196 -11.71999 -11.68415 -11.63513 -11.43282 -11.12976 -11.08348 -10.83007 -10.61363 -10.40988 -10.06502 -8.85798 -8.26087 -6.38699 0.07576 0.27721 1.42196 1.43246 1.54169 1.55593 1.82723 2.10680 2.43917 2.76976 2.92424 3.09051 3.33516 3.59239 3.70402 3.84621 3.90566 4.02740 4.09468 4.18017 4.25032 4.28072 4.32250 4.34645 4.43564 4.46088 4.64974 4.73553 4.83398 4.93036 4.94216 4.97124 5.03922 5.08264 5.13192 5.18727 5.28796 5.30544 5.38456 5.45233 5.49505 5.52853 5.64272 5.72989 6.07260 6.21945 6.32840 6.76044 6.95630 7.28195 7.31273 8.86489 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.002532 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.544922 B =11057.972089 C =12540.153665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.076 4.076 4 C -0.109 4.109 5 H 0.137 0.863 6 C -0.138 4.138 7 C -0.205 4.205 8 H 0.145 0.855 9 C 0.527 3.473 10 O -0.505 6.505 11 N -0.652 5.652 12 C 0.311 3.689 13 N -0.472 5.472 14 C 0.073 3.927 15 C -0.146 4.146 16 C -0.149 4.149 17 C 0.039 3.961 18 O -0.329 6.329 19 C 0.084 3.916 20 C 0.030 3.970 21 C -0.545 4.545 22 H 0.071 0.929 23 C 0.003 3.997 24 N -0.929 5.929 25 Si 0.971 3.029 26 H -0.272 1.272 27 H -0.283 1.283 28 H -0.260 1.260 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.131 0.869 37 H 0.086 0.914 38 H 0.426 0.574 39 H 0.186 0.814 40 H 0.175 0.825 41 H 0.156 0.844 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.001 0.999 45 H 0.002 0.998 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.025 -13.231 1.533 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.113 4.113 4 C -0.128 4.128 5 H 0.155 0.845 6 C -0.175 4.175 7 C -0.226 4.226 8 H 0.163 0.837 9 C 0.315 3.685 10 O -0.377 6.377 11 N -0.299 5.299 12 C 0.079 3.921 13 N -0.187 5.187 14 C -0.084 4.084 15 C -0.167 4.167 16 C -0.176 4.176 17 C -0.011 4.011 18 O -0.243 6.243 19 C 0.009 3.991 20 C -0.007 4.007 21 C -0.582 4.582 22 H 0.089 0.911 23 C -0.196 4.196 24 N -0.568 5.568 25 Si 0.795 3.205 26 H -0.197 1.197 27 H -0.209 1.209 28 H -0.184 1.184 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.149 0.851 37 H 0.105 0.895 38 H 0.265 0.735 39 H 0.203 0.797 40 H 0.193 0.807 41 H 0.174 0.826 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.891 -14.418 1.639 22.268 hybrid contribution 1.592 2.056 -0.210 2.609 sum -15.299 -12.362 1.429 19.721 Atomic orbital electron populations 1.21756 0.96094 1.01817 1.01278 1.21558 0.95790 0.95895 1.02475 1.21137 0.92158 0.96393 1.01656 1.22599 0.95332 0.93701 1.01148 0.84496 1.23190 1.03888 1.00829 0.89596 1.22352 1.02619 0.90878 1.06706 0.83748 1.20524 0.88698 0.83757 0.75540 1.90755 1.15123 1.85642 1.46183 1.43624 1.10717 1.04140 1.71445 1.18057 0.88557 0.84326 1.01155 1.67687 1.01428 1.34901 1.14721 1.23056 1.00654 0.87333 0.97347 1.22273 0.94403 0.99721 1.00291 1.21902 0.94992 0.98341 1.02330 1.19769 0.84485 0.94025 1.02841 1.86030 1.16750 1.33379 1.88092 1.22953 0.95413 0.80016 1.00672 1.18945 0.88577 0.96932 0.96278 1.21397 0.92381 0.92985 1.51480 0.91103 1.25973 0.97527 1.01682 0.94391 1.70097 1.03755 1.32407 1.50512 0.85352 0.77734 0.78807 0.78593 1.19726 1.20888 1.18376 0.93492 0.93579 0.91580 0.91282 0.91247 0.93515 0.92861 0.85063 0.89512 0.73531 0.79742 0.80730 0.82608 0.91829 0.91846 0.98026 0.98008 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.91 71.98 0.71 -1.80 16 2 C -0.12 -1.95 5.89 30.60 0.18 -1.77 16 3 C -0.08 -1.65 3.76 30.60 0.11 -1.53 16 4 C -0.11 -1.96 5.74 -10.77 -0.06 -2.03 16 5 H 0.14 1.78 8.07 -2.39 -0.02 1.76 16 6 C -0.14 -2.38 9.88 30.62 0.30 -2.07 16 7 C -0.20 -4.28 6.19 -11.54 -0.07 -4.35 16 8 H 0.14 2.44 8.14 -2.38 -0.02 2.42 16 9 C 0.53 15.53 7.56 87.66 0.66 16.19 16 10 O -0.50 -17.54 11.36 -3.04 -0.03 -17.57 16 11 N -0.65 -20.13 5.39 -308.02 -1.66 -21.80 16 12 C 0.31 10.58 7.45 132.98 0.99 11.57 16 13 N -0.47 -15.73 7.88 -192.58 -1.52 -17.24 16 14 C 0.07 1.86 11.17 84.64 0.95 2.80 16 15 C -0.15 -3.26 10.10 22.36 0.23 -3.04 16 16 C -0.15 -4.13 9.14 22.53 0.21 -3.93 16 17 C 0.04 1.33 6.72 22.70 0.15 1.48 16 18 O -0.33 -12.47 9.39 -93.35 -0.88 -13.35 16 19 C 0.08 3.32 4.70 71.98 0.34 3.65 16 20 C 0.03 1.52 5.34 29.85 0.16 1.68 16 21 C -0.54 -29.18 9.11 25.60 0.23 -28.94 16 22 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 23 C 0.00 0.17 5.46 84.66 0.46 0.63 16 24 N -0.93 -54.39 13.29 21.45 0.28 -54.11 16 25 Si 0.97 42.04 29.54 68.60 2.03 44.07 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 27 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 28 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 1.21 7.30 -2.39 -0.02 1.19 16 35 H 0.05 1.44 6.92 -2.39 -0.02 1.42 16 36 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 1.74 8.04 -2.39 -0.02 1.72 16 38 H 0.43 12.12 8.04 -92.71 -0.75 11.37 16 39 H 0.19 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.16 3.89 6.44 -2.91 -0.02 3.87 16 42 H 0.06 2.35 7.70 -2.39 -0.02 2.33 16 43 H 0.06 2.35 7.70 -2.39 -0.02 2.33 16 44 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 46 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -69.77 381.93 4.01 -65.76 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.23 Total: 25.68 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 5.55 Total: -11.45 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -2.89 Total: -93.14 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.91 Total: -30.92 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -69.77 4.01 -65.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079939201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.994 kcal (2) G-P(sol) polarization free energy of solvation -69.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds