Wall clock time and date at job start Tue Mar 31 2020 12:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46961 * 2 1 4 4 C 1.53001 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.08998 * 115.56329 * 330.69226 * 4 3 2 6 6 C 1.53007 * 117.49488 * 116.37706 * 4 3 2 7 7 C 1.53000 * 117.49815 * 184.99703 * 4 3 2 8 8 H 1.09000 * 117.52064 * 359.97438 * 7 4 3 9 9 C 1.50696 * 117.49833 * 145.02446 * 7 4 3 10 10 O 1.21284 * 120.00109 * 0.02562 * 9 7 4 11 11 N 1.34777 * 120.00137 * 180.02562 * 9 7 4 12 12 C 1.39575 * 119.99703 * 180.02562 * 11 9 7 13 13 N 1.32274 * 119.73358 * 359.72269 * 12 11 9 14 14 C 1.31957 * 121.69526 * 179.75438 * 13 12 11 15 15 C 1.38083 * 120.95211 * 0.52578 * 14 13 12 16 16 C 1.38781 * 119.35957 * 359.74079 * 15 14 13 17 17 C 1.38809 * 118.43947 * 0.02562 * 16 15 14 18 18 O 1.35980 * 120.49063 * 179.97438 * 17 16 15 19 19 C 1.42900 * 117.00061 * 0.02562 * 18 17 16 20 20 C 1.53000 * 109.46905 * 179.97438 * 19 18 17 21 21 C 1.50697 * 109.47380 * 179.97438 * 20 19 18 22 22 H 1.08005 * 119.99498 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00369 * 180.02562 * 21 20 19 24 24 N 1.31513 * 119.99650 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99917 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47105 * 60.00254 * 25 23 21 27 27 H 1.48503 * 109.47117 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47447 * 299.99588 * 25 23 21 29 29 H 1.09002 * 109.46897 * 60.00069 * 1 2 3 30 30 H 1.08998 * 109.46762 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47354 * 299.99875 * 1 2 3 32 32 H 1.08997 * 109.47354 * 240.00125 * 2 1 3 33 33 H 1.09002 * 109.46897 * 119.99931 * 2 1 3 34 34 H 1.08997 * 109.46984 * 59.99899 * 3 2 1 35 35 H 1.08998 * 109.47347 * 300.00207 * 3 2 1 36 36 H 1.08997 * 117.49891 * 0.02562 * 6 4 3 37 37 H 1.08998 * 117.51539 * 214.96952 * 6 4 3 38 38 H 0.96999 * 120.00047 * 359.97438 * 11 9 7 39 39 H 1.08000 * 119.52530 * 180.28858 * 14 13 12 40 40 H 1.07998 * 120.32466 * 179.72333 * 15 14 13 41 41 H 1.07990 * 120.77920 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.47175 * 299.99633 * 19 18 17 43 43 H 1.08998 * 109.47232 * 60.00422 * 19 18 17 44 44 H 1.09006 * 109.47249 * 300.00259 * 20 19 18 45 45 H 1.09004 * 109.46935 * 59.99861 * 20 19 18 46 46 H 0.96998 * 119.99457 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0402 0.5852 0.4823 6 6 4.2769 2.0453 -1.2151 7 6 4.2764 2.7945 0.1190 8 1 3.6514 3.6843 0.1959 9 6 5.5689 2.8390 0.8925 10 8 6.0115 1.8265 1.3925 11 7 6.2330 4.0038 1.0288 12 6 7.4304 4.0448 1.7448 13 7 7.9057 2.9383 2.2921 14 6 9.0360 2.9318 2.9730 15 6 9.7652 4.0910 3.1499 16 6 9.3022 5.2770 2.5978 17 6 8.1128 5.2533 1.8826 18 8 7.6205 6.3913 1.3244 19 6 8.3806 7.5869 1.5111 20 6 7.6751 8.7534 0.8165 21 6 8.4763 10.0144 1.0138 22 1 9.3970 9.9864 1.5779 23 6 8.0342 11.2037 0.4743 24 7 6.9134 11.2375 -0.2129 25 14 9.0270 12.7668 0.7196 26 1 10.3812 12.5898 0.1363 27 1 8.3424 13.8991 0.0454 28 1 9.1471 13.0543 2.1715 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.6520 2.4422 -2.0151 37 1 5.2122 1.5849 -1.5333 38 1 5.8793 4.8135 0.6286 39 1 9.3941 2.0072 3.4012 40 1 10.6868 4.0749 3.7128 41 1 9.8539 6.1970 2.7223 42 1 8.4696 7.7982 2.5767 43 1 9.3742 7.4565 1.0822 44 1 7.5864 8.5418 -0.2492 45 1 6.6814 8.8840 1.2449 46 1 6.6026 12.0742 -0.5928 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079939204.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:39 Heat of formation + Delta-G solvation = -26.958153 kcal Electronic energy + Delta-G solvation = -25478.513105 eV Core-core repulsion = 21754.998481 eV Total energy + Delta-G solvation = -3723.514624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.91220 -39.64850 -37.90325 -37.24481 -34.76809 -34.08796 -33.48009 -31.63841 -30.61795 -29.20676 -27.74698 -25.47457 -24.91561 -23.15382 -22.57285 -22.14277 -21.01434 -20.66063 -19.93169 -18.30659 -17.54249 -17.28985 -16.18189 -15.97996 -15.78017 -15.44090 -15.15475 -14.94007 -14.61947 -14.56695 -14.39788 -13.93852 -13.60830 -13.40134 -13.04838 -12.82589 -12.46687 -12.40762 -12.27000 -12.03032 -11.93148 -11.57449 -11.30210 -11.09533 -11.07961 -10.98454 -10.73446 -10.69757 -10.43915 -10.21568 -10.15118 -10.05193 -9.78013 -9.43132 -9.21448 -9.02223 -8.52655 -7.65875 -6.18481 -4.23529 1.19921 1.44797 2.57005 2.85785 3.23351 3.27976 3.29078 3.52730 3.63682 4.02691 4.22817 4.33285 4.50074 4.57431 4.68979 4.81650 4.88225 4.93381 4.95038 5.04345 5.12569 5.18267 5.26824 5.30396 5.45844 5.46454 5.51877 5.55412 5.60069 5.76104 5.78168 5.85747 5.89353 5.95645 5.99469 6.06213 6.15905 6.18874 6.36614 6.53565 6.63500 7.29095 7.34020 7.51949 7.63349 7.84858 8.08210 8.13762 8.37456 8.81422 9.41328 10.92905 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.002564 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.359849 B =10916.867555 C =12994.629584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.116 4.116 5 H 0.118 0.882 6 C -0.147 4.147 7 C -0.191 4.191 8 H 0.127 0.873 9 C 0.535 3.465 10 O -0.483 6.483 11 N -0.648 5.648 12 C 0.328 3.672 13 N -0.445 5.445 14 C 0.074 3.926 15 C -0.160 4.160 16 C -0.148 4.148 17 C 0.067 3.933 18 O -0.315 6.315 19 C 0.066 3.934 20 C 0.027 3.973 21 C -0.529 4.529 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.889 5.889 25 Si 0.899 3.101 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.425 0.575 39 H 0.156 0.844 40 H 0.134 0.866 41 H 0.145 0.855 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.737 -19.121 1.177 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.129 4.129 4 C -0.134 4.134 5 H 0.136 0.864 6 C -0.184 4.184 7 C -0.212 4.212 8 H 0.145 0.855 9 C 0.321 3.679 10 O -0.353 6.353 11 N -0.295 5.295 12 C 0.095 3.905 13 N -0.160 5.160 14 C -0.082 4.082 15 C -0.181 4.181 16 C -0.175 4.175 17 C 0.016 3.984 18 O -0.228 6.228 19 C -0.008 4.008 20 C -0.010 4.010 21 C -0.567 4.567 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.527 5.527 25 Si 0.727 3.273 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.263 0.737 39 H 0.174 0.826 40 H 0.152 0.848 41 H 0.163 0.837 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.264 -20.480 1.182 21.449 hybrid contribution 1.151 2.443 0.171 2.706 sum -5.114 -18.037 1.352 18.797 Atomic orbital electron populations 1.21784 0.95883 1.01588 1.01837 1.21500 0.95640 0.96502 1.02321 1.21258 0.91842 0.97378 1.02383 1.22464 0.94711 0.95193 1.01051 0.86374 1.23131 1.03150 1.01849 0.90315 1.22295 0.97407 0.99293 1.02214 0.85548 1.19834 0.84760 0.82930 0.80418 1.90772 1.66733 1.32896 1.44886 1.43419 1.20861 1.12915 1.52349 1.17827 0.88633 0.87582 0.96408 1.67619 1.13531 1.25509 1.09309 1.22410 0.90467 0.98186 0.97158 1.21890 1.01634 0.92853 1.01773 1.21614 0.95890 1.00299 0.99683 1.19605 0.94242 0.87436 0.97138 1.86103 1.50564 1.15313 1.70826 1.23397 0.95130 0.81668 1.00606 1.19121 0.96562 0.88950 0.96385 1.20909 1.08292 0.92464 1.35057 0.92388 1.24982 0.95111 0.99202 0.94820 1.69953 1.20974 1.27190 1.34544 0.86537 0.80098 0.82202 0.78490 1.20070 1.21078 1.20062 0.92756 0.92797 0.92714 0.91820 0.91805 0.91295 0.91488 0.87611 0.88249 0.73718 0.82641 0.84789 0.83729 0.92941 0.92945 0.95345 0.95356 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.12 -0.87 5.89 -26.73 -0.16 -1.02 16 3 C -0.09 -0.70 5.50 -26.73 -0.15 -0.85 16 4 C -0.12 -1.11 5.25 -90.62 -0.48 -1.59 16 5 H 0.12 1.32 7.60 -51.93 -0.39 0.92 16 6 C -0.15 -1.35 9.88 -26.73 -0.26 -1.62 16 7 C -0.19 -2.06 5.91 -91.77 -0.54 -2.60 16 8 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 9 C 0.53 7.87 7.58 -10.99 -0.08 7.79 16 10 O -0.48 -8.62 14.51 5.55 0.08 -8.54 16 11 N -0.65 -9.78 5.39 -11.29 -0.06 -9.85 16 12 C 0.33 5.57 7.45 -154.44 -1.15 4.42 16 13 N -0.44 -7.59 7.88 -12.22 -0.10 -7.69 16 14 C 0.07 1.03 11.17 -17.55 -0.20 0.83 16 15 C -0.16 -2.03 10.10 -39.44 -0.40 -2.43 16 16 C -0.15 -2.19 9.14 -39.17 -0.36 -2.54 16 17 C 0.07 1.14 6.72 -38.91 -0.26 0.88 16 18 O -0.32 -5.86 9.39 -19.68 -0.18 -6.04 16 19 C 0.07 1.30 4.70 37.16 0.17 1.48 16 20 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 21 C -0.53 -14.13 9.11 -34.44 -0.31 -14.44 16 22 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 23 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 24 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 25 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.46 7.88 -51.93 -0.41 0.06 16 36 H 0.11 0.78 8.03 -51.93 -0.42 0.36 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.42 5.74 8.05 -40.82 -0.33 5.41 16 39 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.15 1.97 6.44 -52.49 -0.34 1.63 16 42 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 43 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 387.39 15.07 5.84 5.84 Total: -1.00 -31.90 387.39 -10.06 -41.96 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -7.30 Total: 3.66 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -4.05 Total: -10.19 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.58 Total: -42.32 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.10 Total: -14.58 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.90 -10.06 -41.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079939204.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.007 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds