Wall clock time and date at job start Tue Mar 31 2020 12:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46961 * 2 1 4 4 C 1.53001 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.08998 * 115.56329 * 330.69226 * 4 3 2 6 6 C 1.53007 * 117.49488 * 116.37706 * 4 3 2 7 7 C 1.53000 * 117.49815 * 184.99703 * 4 3 2 8 8 H 1.09000 * 117.52064 * 359.97438 * 7 4 3 9 9 C 1.50696 * 117.49833 * 145.02446 * 7 4 3 10 10 O 1.21284 * 120.00109 * 0.02562 * 9 7 4 11 11 N 1.34777 * 120.00137 * 180.02562 * 9 7 4 12 12 C 1.39575 * 119.99703 * 180.02562 * 11 9 7 13 13 N 1.32274 * 119.73358 * 359.72269 * 12 11 9 14 14 C 1.31957 * 121.69526 * 179.75438 * 13 12 11 15 15 C 1.38083 * 120.95211 * 0.52578 * 14 13 12 16 16 C 1.38781 * 119.35957 * 359.74079 * 15 14 13 17 17 C 1.38809 * 118.43947 * 0.02562 * 16 15 14 18 18 O 1.35980 * 120.49063 * 179.97438 * 17 16 15 19 19 C 1.42900 * 117.00061 * 0.02562 * 18 17 16 20 20 C 1.53000 * 109.46905 * 179.97438 * 19 18 17 21 21 C 1.50697 * 109.47380 * 179.97438 * 20 19 18 22 22 H 1.08005 * 119.99498 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00369 * 180.02562 * 21 20 19 24 24 N 1.31513 * 119.99650 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99917 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47105 * 60.00254 * 25 23 21 27 27 H 1.48503 * 109.47117 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47447 * 299.99588 * 25 23 21 29 29 H 1.09002 * 109.46897 * 60.00069 * 1 2 3 30 30 H 1.08998 * 109.46762 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47354 * 299.99875 * 1 2 3 32 32 H 1.08997 * 109.47354 * 240.00125 * 2 1 3 33 33 H 1.09002 * 109.46897 * 119.99931 * 2 1 3 34 34 H 1.08997 * 109.46984 * 59.99899 * 3 2 1 35 35 H 1.08998 * 109.47347 * 300.00207 * 3 2 1 36 36 H 1.08997 * 117.49891 * 0.02562 * 6 4 3 37 37 H 1.08998 * 117.51539 * 214.96952 * 6 4 3 38 38 H 0.96999 * 120.00047 * 359.97438 * 11 9 7 39 39 H 1.08000 * 119.52530 * 180.28858 * 14 13 12 40 40 H 1.07998 * 120.32466 * 179.72333 * 15 14 13 41 41 H 1.07990 * 120.77920 * 179.97438 * 16 15 14 42 42 H 1.09000 * 109.47175 * 299.99633 * 19 18 17 43 43 H 1.08998 * 109.47232 * 60.00422 * 19 18 17 44 44 H 1.09006 * 109.47249 * 300.00259 * 20 19 18 45 45 H 1.09004 * 109.46935 * 59.99861 * 20 19 18 46 46 H 0.96998 * 119.99457 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0402 0.5852 0.4823 6 6 4.2769 2.0453 -1.2151 7 6 4.2764 2.7945 0.1190 8 1 3.6514 3.6843 0.1959 9 6 5.5689 2.8390 0.8925 10 8 6.0115 1.8265 1.3925 11 7 6.2330 4.0038 1.0288 12 6 7.4304 4.0448 1.7448 13 7 7.9057 2.9383 2.2921 14 6 9.0360 2.9318 2.9730 15 6 9.7652 4.0910 3.1499 16 6 9.3022 5.2770 2.5978 17 6 8.1128 5.2533 1.8826 18 8 7.6205 6.3913 1.3244 19 6 8.3806 7.5869 1.5111 20 6 7.6751 8.7534 0.8165 21 6 8.4763 10.0144 1.0138 22 1 9.3970 9.9864 1.5779 23 6 8.0342 11.2037 0.4743 24 7 6.9134 11.2375 -0.2129 25 14 9.0270 12.7668 0.7196 26 1 10.3812 12.5898 0.1363 27 1 8.3424 13.8991 0.0454 28 1 9.1471 13.0543 2.1715 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.6520 2.4422 -2.0151 37 1 5.2122 1.5849 -1.5333 38 1 5.8793 4.8135 0.6286 39 1 9.3941 2.0072 3.4012 40 1 10.6868 4.0749 3.7128 41 1 9.8539 6.1970 2.7223 42 1 8.4696 7.7982 2.5767 43 1 9.3742 7.4565 1.0822 44 1 7.5864 8.5418 -0.2492 45 1 6.6814 8.8840 1.2449 46 1 6.6026 12.0742 -0.5928 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079939204.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:38 Heat of formation + Delta-G solvation = -44.124582 kcal Electronic energy + Delta-G solvation = -25479.257498 eV Core-core repulsion = 21754.998481 eV Total energy + Delta-G solvation = -3724.259017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.09511 -40.76444 -39.20813 -38.16840 -35.96669 -35.44709 -34.73433 -32.92228 -32.28207 -30.52239 -28.40429 -27.17793 -26.03192 -24.54490 -23.66767 -22.87288 -22.51160 -21.49416 -21.00930 -19.58571 -18.86405 -18.43245 -18.02308 -17.20987 -17.14316 -16.50562 -16.27211 -16.14552 -15.98128 -15.56990 -15.33553 -15.19551 -14.72228 -14.35779 -14.21956 -14.15758 -13.74144 -13.64452 -13.32341 -13.14374 -12.94708 -12.82189 -12.72746 -12.45755 -12.21575 -11.95274 -11.89437 -11.72147 -11.67540 -11.64612 -11.45965 -11.36712 -11.13023 -10.93265 -10.60374 -10.42962 -10.19877 -8.88367 -8.25631 -6.38304 0.05366 0.26575 1.42466 1.45179 1.49593 1.52976 1.78039 2.09840 2.44113 2.75169 2.90778 3.09457 3.28207 3.61628 3.70557 3.80472 3.83820 3.97662 4.09609 4.19290 4.21010 4.28434 4.30115 4.32157 4.37936 4.45340 4.63764 4.73757 4.82293 4.86812 4.93138 4.94930 4.98805 5.06067 5.11972 5.20766 5.25514 5.30371 5.36653 5.41421 5.49849 5.51596 5.52801 5.72886 6.07519 6.18034 6.31763 6.76264 6.91541 7.23873 7.31627 8.86775 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.002564 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.359849 B =10916.867555 C =12994.629584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.111 4.111 5 H 0.099 0.901 6 C -0.134 4.134 7 C -0.200 4.200 8 H 0.145 0.855 9 C 0.531 3.469 10 O -0.521 6.521 11 N -0.649 5.649 12 C 0.308 3.692 13 N -0.475 5.475 14 C 0.072 3.928 15 C -0.144 4.144 16 C -0.149 4.149 17 C 0.042 3.958 18 O -0.329 6.329 19 C 0.083 3.917 20 C 0.030 3.970 21 C -0.546 4.546 22 H 0.071 0.929 23 C 0.003 3.997 24 N -0.929 5.929 25 Si 0.971 3.029 26 H -0.265 1.265 27 H -0.285 1.285 28 H -0.265 1.265 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.132 0.868 37 H 0.089 0.911 38 H 0.428 0.572 39 H 0.186 0.814 40 H 0.177 0.823 41 H 0.158 0.842 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.002 0.998 45 H 0.001 0.999 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 -19.122 1.787 19.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.123 4.123 4 C -0.130 4.130 5 H 0.117 0.883 6 C -0.172 4.172 7 C -0.221 4.221 8 H 0.163 0.837 9 C 0.319 3.681 10 O -0.394 6.394 11 N -0.297 5.297 12 C 0.076 3.924 13 N -0.190 5.190 14 C -0.084 4.084 15 C -0.165 4.165 16 C -0.175 4.175 17 C -0.009 4.009 18 O -0.242 6.242 19 C 0.009 3.991 20 C -0.007 4.007 21 C -0.583 4.583 22 H 0.089 0.911 23 C -0.195 4.195 24 N -0.568 5.568 25 Si 0.795 3.205 26 H -0.190 1.190 27 H -0.210 1.210 28 H -0.190 1.190 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.150 0.850 37 H 0.107 0.893 38 H 0.267 0.733 39 H 0.203 0.797 40 H 0.194 0.806 41 H 0.175 0.825 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.110 -20.487 1.792 21.190 hybrid contribution 0.841 2.310 0.032 2.458 sum -4.268 -18.177 1.824 18.760 Atomic orbital electron populations 1.21772 0.95063 1.02030 1.02080 1.21493 0.96320 0.96034 1.02098 1.21255 0.90148 0.97940 1.02988 1.22468 0.95869 0.93695 1.00945 0.88333 1.23232 1.02990 1.00667 0.90269 1.22348 0.95943 1.00765 1.03086 0.83718 1.20504 0.85522 0.82175 0.79918 1.90735 1.68029 1.33970 1.46650 1.43543 1.20672 1.13307 1.52135 1.18053 0.89387 0.87770 0.97155 1.67673 1.15154 1.25808 1.10411 1.23070 0.89471 1.00013 0.95889 1.22287 1.02425 0.91291 1.00477 1.21922 0.94996 1.01751 0.98858 1.19756 0.95698 0.86606 0.98849 1.86030 1.50826 1.15539 1.71804 1.22965 0.94693 0.80900 1.00542 1.18942 0.95720 0.90980 0.95067 1.21370 1.08822 0.93295 1.34855 0.91082 1.25971 0.96164 1.02970 0.94441 1.70093 1.22805 1.28147 1.35725 0.85410 0.78651 0.77608 0.78851 1.18957 1.21018 1.18951 0.92165 0.92305 0.92805 0.91544 0.92612 0.91448 0.90056 0.85037 0.89254 0.73302 0.79667 0.80590 0.82452 0.91777 0.91773 0.98006 0.98028 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.12 -1.64 5.89 30.60 0.18 -1.46 16 3 C -0.09 -1.24 5.50 30.59 0.17 -1.07 16 4 C -0.11 -2.12 5.25 -10.79 -0.06 -2.18 16 5 H 0.10 2.30 7.60 -2.39 -0.02 2.28 16 6 C -0.13 -2.38 9.88 30.60 0.30 -2.08 16 7 C -0.20 -4.32 5.91 -11.54 -0.07 -4.39 16 8 H 0.15 2.55 8.14 -2.39 -0.02 2.53 16 9 C 0.53 16.18 7.58 87.66 0.66 16.84 16 10 O -0.52 -19.33 14.51 -3.04 -0.04 -19.37 16 11 N -0.65 -20.34 5.39 -308.03 -1.66 -22.01 16 12 C 0.31 10.61 7.45 132.99 0.99 11.60 16 13 N -0.47 -16.16 7.88 -192.59 -1.52 -17.68 16 14 C 0.07 1.86 11.17 84.64 0.95 2.81 16 15 C -0.14 -3.21 10.10 22.36 0.23 -2.99 16 16 C -0.15 -4.11 9.14 22.54 0.21 -3.90 16 17 C 0.04 1.40 6.72 22.70 0.15 1.55 16 18 O -0.33 -12.41 9.39 -93.33 -0.88 -13.28 16 19 C 0.08 3.28 4.70 71.98 0.34 3.62 16 20 C 0.03 1.53 5.34 29.85 0.16 1.69 16 21 C -0.55 -29.15 9.11 25.60 0.23 -28.92 16 22 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 23 C 0.00 0.19 5.46 84.66 0.46 0.65 16 24 N -0.93 -54.33 13.29 21.45 0.28 -54.05 16 25 Si 0.97 41.93 29.54 68.60 2.03 43.96 16 26 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 27 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 28 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 0.96 7.88 -2.39 -0.02 0.94 16 36 H 0.13 1.66 8.03 -2.39 -0.02 1.64 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.43 12.20 8.05 -92.71 -0.75 11.45 16 39 H 0.19 3.49 8.06 -2.91 -0.02 3.46 16 40 H 0.18 2.43 8.06 -2.91 -0.02 2.40 16 41 H 0.16 3.88 6.44 -2.92 -0.02 3.86 16 42 H 0.06 2.35 7.70 -2.39 -0.02 2.34 16 43 H 0.06 2.35 7.70 -2.39 -0.02 2.34 16 44 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 45 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 46 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -70.71 387.39 4.06 -66.65 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.23 Total: 25.02 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 5.62 Total: -9.24 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -2.89 Total: -93.73 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.92 Total: -32.66 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -70.71 4.06 -66.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079939204.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.530 kcal (2) G-P(sol) polarization free energy of solvation -70.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds