Wall clock time and date at job start Tue Mar 31 2020 12:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46967 * 2 1 4 4 C 1.52999 * 109.47078 * 119.99640 * 2 1 3 5 5 H 1.08997 * 110.00290 * 179.10884 * 4 2 1 6 6 C 1.54319 * 109.77510 * 300.27402 * 4 2 1 7 7 C 1.55152 * 102.86240 * 141.88577 * 6 4 2 8 8 C 1.54906 * 101.58441 * 324.29682 * 7 6 4 9 9 N 1.47027 * 109.87822 * 58.01832 * 4 2 1 10 10 C 1.34770 * 125.64876 * 61.67811 * 9 4 2 11 11 O 1.21587 * 120.00063 * 4.80132 * 10 9 4 12 12 N 1.34778 * 120.00261 * 184.79382 * 10 9 4 13 13 C 1.39940 * 120.00198 * 175.29431 * 12 10 9 14 14 C 1.38959 * 120.03563 * 215.81593 * 13 12 10 15 15 C 1.38158 * 120.06568 * 179.97438 * 14 13 12 16 16 C 1.38164 * 120.14125 * 359.97438 * 15 14 13 17 17 C 1.38911 * 120.06846 * 359.97438 * 16 15 14 18 18 O 1.35746 * 120.03345 * 180.02562 * 17 16 15 19 19 C 1.34833 * 117.00137 * 5.69249 * 18 17 16 20 20 H 1.07995 * 119.99928 * 5.36549 * 19 18 17 21 21 C 1.38651 * 120.00316 * 185.37205 * 19 18 17 22 22 N 1.31565 * 119.99589 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00350 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46773 * 59.99655 * 23 21 19 25 25 H 1.48497 * 109.47041 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.46896 * 299.99930 * 23 21 19 27 27 C 1.38702 * 120.03452 * 35.79329 * 13 12 10 28 28 H 1.09009 * 109.46820 * 66.33674 * 1 2 3 29 29 H 1.08998 * 109.47419 * 186.33265 * 1 2 3 30 30 H 1.08999 * 109.47595 * 306.33769 * 1 2 3 31 31 H 1.08997 * 109.47339 * 240.00187 * 2 1 3 32 32 H 1.09009 * 109.46810 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47191 * 299.99752 * 3 2 1 34 34 H 1.08997 * 109.46939 * 59.99942 * 3 2 1 35 35 H 1.08991 * 110.92609 * 23.46440 * 6 4 2 36 36 H 1.09004 * 110.73420 * 260.21341 * 6 4 2 37 37 H 1.09007 * 110.99961 * 206.22817 * 7 6 4 38 38 H 1.08999 * 111.04119 * 82.39241 * 7 6 4 39 39 H 1.09004 * 110.37167 * 278.17757 * 8 7 6 40 40 H 1.08997 * 110.37290 * 155.85401 * 8 7 6 41 41 H 0.97007 * 119.99585 * 355.29845 * 12 10 9 42 42 H 1.08002 * 119.96601 * 359.95472 * 14 13 12 43 43 H 1.08005 * 119.93104 * 179.72109 * 15 14 13 44 44 H 1.08006 * 119.96331 * 179.97438 * 16 15 14 45 45 H 0.96999 * 119.99600 * 180.02562 * 22 21 19 46 46 H 1.07999 * 120.07185 * 0.04696 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1298 -0.7400 1.2501 6 6 1.5238 -0.0031 2.5139 7 6 1.2127 -1.1796 3.4764 8 6 0.6901 -2.2562 2.4929 9 7 1.5162 -2.0946 1.2826 10 6 1.7562 -3.0493 0.3621 11 8 2.5295 -2.8329 -0.5509 12 7 1.1392 -4.2440 0.4537 13 6 1.3115 -5.1996 -0.5540 14 6 0.2556 -6.0273 -0.9156 15 6 0.4248 -6.9706 -1.9108 16 6 1.6436 -7.0938 -2.5498 17 6 2.7027 -6.2686 -2.1937 18 8 3.8997 -6.3899 -2.8224 19 6 3.9613 -7.2469 -3.8616 20 1 3.0640 -7.7336 -4.2139 21 6 5.1766 -7.5033 -4.4777 22 7 6.2697 -6.9100 -4.0486 23 14 5.2621 -8.6911 -5.9169 24 1 4.3984 -8.1963 -7.0189 25 1 6.6647 -8.7904 -6.3942 26 1 4.7908 -10.0304 -5.4819 27 6 2.5364 -5.3212 -1.1933 28 1 -0.3633 0.4125 -0.9414 29 1 -0.3634 -1.0214 0.1133 30 1 -0.3634 0.6089 0.8278 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.6204 0.5667 2.2967 36 1 2.2949 0.6439 2.9322 37 1 0.4431 -0.9020 4.1968 38 1 2.1156 -1.5192 3.9839 39 1 -0.3605 -2.0806 2.2614 40 1 0.8251 -3.2524 2.9141 41 1 0.5757 -4.4415 1.2182 42 1 -0.6984 -5.9334 -0.4179 43 1 -0.3961 -7.6159 -2.1869 44 1 1.7728 -7.8324 -3.3271 45 1 7.1199 -7.0891 -4.4799 46 1 3.3588 -4.6794 -0.9139 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144071177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:10 Heat of formation + Delta-G solvation = -48.468540 kcal Electronic energy + Delta-G solvation = -26958.954659 eV Core-core repulsion = 23234.507274 eV Total energy + Delta-G solvation = -3724.447385 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.97139 -40.72830 -39.49252 -38.01347 -35.94168 -35.13974 -34.25932 -32.65857 -31.06097 -29.88596 -28.99282 -27.99031 -27.33460 -25.23152 -23.62536 -23.07214 -22.92361 -21.44091 -20.27728 -19.87407 -19.15966 -18.63955 -17.65788 -17.03354 -16.76098 -16.41360 -16.38857 -16.06768 -15.83903 -15.48960 -15.34188 -14.73854 -14.57003 -14.27626 -14.26979 -14.05502 -13.91968 -13.58546 -13.20850 -13.08285 -12.98671 -12.90019 -12.76089 -12.64368 -12.36122 -12.22695 -12.16865 -12.09655 -11.91235 -11.55916 -11.46863 -11.32589 -11.23401 -10.88488 -10.76553 -9.74077 -9.28396 -8.85072 -8.46824 -6.16690 0.46881 0.70853 1.33250 1.43318 1.46375 1.51628 2.03401 2.18301 2.83691 2.85704 3.17868 3.50912 3.63378 3.66661 3.87080 4.07457 4.14916 4.15842 4.21534 4.37163 4.42525 4.45439 4.53629 4.58468 4.69251 4.73318 4.75062 4.77486 4.92097 4.92735 5.02992 5.03805 5.05740 5.10172 5.13679 5.21995 5.26439 5.31116 5.40524 5.47156 5.48250 5.57207 5.64007 5.74540 6.00711 6.03214 6.22176 6.86936 6.96418 7.47228 7.80071 8.77118 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018654 B = 0.003009 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.630787 B = 9304.557162 C =10042.233068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.153 3.847 5 H 0.045 0.955 6 C -0.119 4.119 7 C -0.122 4.122 8 C 0.085 3.915 9 N -0.625 5.625 10 C 0.708 3.292 11 O -0.617 6.617 12 N -0.666 5.666 13 C 0.202 3.798 14 C -0.205 4.205 15 C -0.046 4.046 16 C -0.256 4.256 17 C 0.127 3.873 18 O -0.237 6.237 19 C -0.415 4.415 20 H 0.106 0.894 21 C -0.028 4.028 22 N -0.925 5.925 23 Si 1.025 2.975 24 H -0.257 1.257 25 H -0.272 1.272 26 H -0.252 1.252 27 C -0.214 4.214 28 H 0.046 0.954 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.030 0.970 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.423 0.577 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.124 0.876 45 H 0.272 0.728 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.332 12.377 17.269 28.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.133 4.133 3 C -0.195 4.195 4 C 0.049 3.951 5 H 0.063 0.937 6 C -0.156 4.156 7 C -0.160 4.160 8 C -0.036 4.036 9 N -0.362 5.362 10 C 0.411 3.589 11 O -0.496 6.496 12 N -0.315 5.315 13 C 0.106 3.894 14 C -0.225 4.225 15 C -0.065 4.065 16 C -0.275 4.275 17 C 0.076 3.924 18 O -0.144 6.144 19 C -0.491 4.491 20 H 0.123 0.877 21 C -0.225 4.225 22 N -0.564 5.564 23 Si 0.843 3.157 24 H -0.181 1.181 25 H -0.197 1.197 26 H -0.176 1.176 27 C -0.236 4.236 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.263 0.737 42 H 0.181 0.819 43 H 0.180 0.820 44 H 0.142 0.858 45 H 0.081 0.919 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.346 12.665 16.623 27.159 hybrid contribution 0.894 -0.660 -0.787 1.362 sum -16.452 12.005 15.836 25.799 Atomic orbital electron populations 1.21751 0.93590 1.01405 1.02274 1.21428 0.97480 0.97142 0.97248 1.21760 1.00600 0.93962 1.03146 1.21627 0.96935 0.79545 0.96985 0.93684 1.22804 1.03334 0.97640 0.91861 1.22774 1.02759 0.93693 0.96771 1.22719 0.95567 1.01443 0.83850 1.47687 1.53401 1.11013 1.24087 1.15743 0.80702 0.80406 0.82061 1.90994 1.40364 1.80919 1.37364 1.42276 1.52078 1.12485 1.24711 1.17103 0.91885 0.90158 0.90209 1.20852 0.98010 1.00729 1.02936 1.21032 0.95678 0.96527 0.93247 1.21326 0.94811 1.04477 1.06925 1.19678 0.86788 0.93951 0.92010 1.83967 1.28514 1.58837 1.43034 1.21881 0.96735 1.23087 1.07394 0.87660 1.26749 0.93261 1.00039 1.02434 1.70232 0.99811 1.43449 1.42878 0.84576 0.78248 0.77273 0.75601 1.18101 1.19700 1.17565 1.20167 0.98545 1.02086 1.02782 0.93483 0.94080 0.89496 0.95154 0.93564 0.92521 0.89574 0.88008 0.88553 0.86482 0.90949 0.89237 0.89906 0.73741 0.81919 0.82001 0.85780 0.91894 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.73 71.98 0.63 -1.87 16 2 C -0.11 -2.68 2.65 -10.79 -0.03 -2.71 16 3 C -0.14 -2.44 8.96 71.98 0.64 -1.80 16 4 C 0.15 3.36 2.66 45.34 0.12 3.48 16 5 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 6 C -0.12 -1.27 5.17 31.78 0.16 -1.11 16 7 C -0.12 -1.01 7.08 31.98 0.23 -0.79 16 8 C 0.09 1.08 6.47 86.85 0.56 1.64 16 9 N -0.62 -15.09 2.14 -805.88 -1.72 -16.81 16 10 C 0.71 24.94 8.08 179.06 1.45 26.38 16 11 O -0.62 -29.79 13.05 -3.99 -0.05 -29.84 16 12 N -0.67 -20.36 5.30 -317.24 -1.68 -22.04 16 13 C 0.20 7.83 6.28 38.13 0.24 8.07 16 14 C -0.20 -6.44 9.97 22.42 0.22 -6.22 16 15 C -0.05 -1.59 10.03 22.23 0.22 -1.36 16 16 C -0.26 -11.70 9.13 22.41 0.20 -11.50 16 17 C 0.13 7.06 6.64 22.56 0.15 7.21 16 18 O -0.24 -15.77 9.76 -22.73 -0.22 -15.99 16 19 C -0.42 -25.82 9.44 67.92 0.64 -25.18 16 20 H 0.11 5.90 5.29 -2.91 -0.02 5.88 16 21 C -0.03 -1.69 5.49 84.83 0.47 -1.23 16 22 N -0.93 -60.72 13.67 21.61 0.30 -60.43 16 23 Si 1.02 44.98 29.55 68.60 2.03 47.01 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 26 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 27 C -0.21 -11.05 8.63 22.51 0.19 -10.85 16 28 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.04 0.87 7.31 -2.39 -0.02 0.85 16 30 H 0.09 1.04 6.31 -2.39 -0.02 1.02 16 31 H 0.03 1.05 7.06 -2.39 -0.02 1.04 16 32 H 0.05 0.90 8.14 -2.38 -0.02 0.89 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 1.00 7.06 -2.39 -0.02 0.98 16 35 H 0.10 0.76 5.58 -2.39 -0.01 0.74 16 36 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.12 0.29 8.14 -2.38 -0.02 0.27 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.09 0.81 8.12 -2.39 -0.02 0.79 16 40 H 0.08 0.88 7.42 -2.39 -0.02 0.87 16 41 H 0.42 8.59 7.38 -92.70 -0.68 7.90 16 42 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 43 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 44 H 0.12 5.65 5.70 -2.91 -0.02 5.63 16 45 H 0.27 16.32 8.31 -92.71 -0.77 15.55 16 46 H 0.10 5.61 6.27 -2.91 -0.02 5.59 16 Total: -1.00 -91.14 365.15 5.07 -86.07 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.32 Total: 29.84 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 6.11 Total: -17.82 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -3.11 Total: -99.28 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -0.27 Total: -45.83 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -91.14 5.07 -86.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144071177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.606 kcal (2) G-P(sol) polarization free energy of solvation -91.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds