Wall clock time and date at job start Tue Mar 31 2020 12:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47420 * 2 1 4 4 C 1.53004 * 109.47100 * 239.99963 * 2 1 3 5 5 C 1.50697 * 109.47050 * 119.99984 * 2 1 3 6 6 O 1.21281 * 120.00194 * 0.02562 * 5 2 1 7 7 N 1.34774 * 120.00254 * 179.97438 * 5 2 1 8 8 C 1.46496 * 120.00489 * 179.97438 * 7 5 2 9 9 C 1.53004 * 109.47362 * 180.02562 * 8 7 5 10 10 C 1.50699 * 109.46870 * 184.93649 * 9 8 7 11 11 O 1.21283 * 120.00251 * 354.93648 * 10 9 8 12 12 N 1.34775 * 119.99952 * 174.93634 * 10 9 8 13 13 C 1.37149 * 119.99728 * 3.37976 * 12 10 9 14 14 H 1.08004 * 119.99378 * 305.54474 * 13 12 10 15 15 C 1.38885 * 120.00047 * 125.55074 * 13 12 10 16 16 N 1.31420 * 119.99805 * 181.39983 * 15 13 12 17 17 Si 1.86796 * 120.00246 * 1.40144 * 15 13 12 18 18 H 1.48509 * 109.46858 * 95.25578 * 17 15 13 19 19 H 1.48495 * 109.47194 * 215.25386 * 17 15 13 20 20 H 1.48495 * 109.47244 * 335.26050 * 17 15 13 21 21 C 1.39790 * 120.00291 * 183.37390 * 12 10 9 22 22 C 1.38959 * 120.07468 * 171.67765 * 21 12 10 23 23 C 1.38087 * 119.92031 * 179.97438 * 22 21 12 24 24 C 1.38313 * 120.07468 * 0.02562 * 23 22 21 25 25 C 1.38312 * 120.15537 * 359.97438 * 24 23 22 26 26 C 1.38078 * 120.07849 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.47086 * 300.00289 * 1 2 3 28 28 H 1.09005 * 109.46811 * 59.99675 * 1 2 3 29 29 H 1.09003 * 109.47271 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47573 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.47394 * 299.99969 * 3 2 1 32 32 H 1.09003 * 109.47227 * 59.99798 * 3 2 1 33 33 H 1.08995 * 109.46940 * 300.00193 * 4 2 1 34 34 H 1.08997 * 109.46858 * 60.00192 * 4 2 1 35 35 H 1.09003 * 109.46905 * 180.02562 * 4 2 1 36 36 H 0.97002 * 119.99806 * 0.02562 * 7 5 2 37 37 H 1.09003 * 109.46585 * 60.00530 * 8 7 5 38 38 H 1.08995 * 109.47161 * 300.00797 * 8 7 5 39 39 H 1.08998 * 109.46587 * 64.94035 * 9 8 7 40 40 H 1.08992 * 109.47153 * 304.93943 * 9 8 7 41 41 H 0.96998 * 120.00184 * 179.97438 * 16 15 13 42 42 H 1.08003 * 120.04645 * 359.70242 * 22 21 12 43 43 H 1.08001 * 119.96448 * 179.97438 * 23 22 21 44 44 H 1.08001 * 119.91772 * 179.97438 * 24 23 22 45 45 H 1.07999 * 119.95657 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.03415 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2304 6 8 1.2442 -1.1717 2.0286 7 7 3.3573 -0.8340 1.4435 8 6 3.8457 -1.5241 2.6399 9 6 5.3757 -1.5242 2.6399 10 6 5.8779 -2.3374 3.8050 11 8 5.0937 -2.7881 4.6129 12 7 7.1987 -2.5638 3.9492 13 6 8.0910 -1.9969 3.0756 14 1 7.9761 -2.1482 2.0124 15 6 9.1424 -1.2283 3.5581 16 7 9.9814 -0.6623 2.7197 17 14 9.3640 -0.9990 5.3986 18 1 10.3353 -2.0000 5.9087 19 1 9.8748 0.3688 5.6691 20 1 8.0583 -1.1839 6.0813 21 6 7.6591 -3.3764 4.9894 22 6 8.9960 -3.7521 5.0400 23 6 9.4474 -4.5545 6.0691 24 6 8.5706 -4.9845 7.0485 25 6 7.2393 -4.6124 7.0012 26 6 6.7810 -3.8103 5.9750 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 3.9877 -0.4654 0.8050 37 1 3.4819 -2.5517 2.6405 38 1 3.4827 -1.0097 3.5297 39 1 5.7390 -0.5004 2.7279 40 1 5.7390 -1.9599 1.7092 41 1 10.7155 -0.1252 3.0566 42 1 9.6802 -3.4207 4.2729 43 1 10.4862 -4.8473 6.1090 44 1 8.9263 -5.6123 7.8521 45 1 6.5575 -4.9497 7.7679 46 1 5.7412 -3.5206 5.9385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194666615.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:13 Heat of formation + Delta-G solvation = -39.919090 kcal Electronic energy + Delta-G solvation = -26879.166671 eV Core-core repulsion = 23155.090018 eV Total energy + Delta-G solvation = -3724.076653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.29713 -39.95481 -37.73596 -35.75958 -35.27552 -34.92776 -32.29671 -30.91572 -30.15771 -28.82134 -27.55206 -27.26501 -25.43179 -24.42850 -22.42263 -21.70487 -21.19747 -19.77165 -19.07007 -18.02572 -16.73994 -16.69786 -15.98648 -15.68939 -15.55515 -15.41983 -14.85205 -14.19188 -14.15356 -13.95769 -13.86008 -13.71189 -13.25370 -13.15263 -12.88433 -12.57428 -12.51741 -12.44752 -12.33809 -12.16779 -12.01898 -11.89261 -11.47449 -11.36789 -11.16102 -11.08538 -11.06112 -11.00467 -10.69786 -10.34787 -10.14888 -9.61521 -9.46098 -9.06807 -8.90760 -8.49635 -8.07881 -7.13700 -6.63328 -4.60123 1.98689 2.11844 2.73454 3.09935 3.18324 3.20774 3.29920 3.45052 4.01127 4.12744 4.51414 4.53797 4.60139 4.70155 4.78454 5.04349 5.25861 5.35023 5.41393 5.46556 5.51034 5.52902 5.57781 5.62483 5.68735 5.69723 5.74684 5.85643 5.89194 6.00000 6.02103 6.13274 6.24642 6.26623 6.32595 6.36561 6.52002 6.58846 6.77031 7.12244 7.19413 7.26244 7.31136 7.59668 7.66517 7.89558 8.09663 8.32357 8.67940 8.98176 9.27643 10.38271 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018364 B = 0.003330 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.335162 B = 8407.506161 C = 9409.074427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.519 3.481 6 O -0.541 6.541 7 N -0.726 5.726 8 C 0.132 3.868 9 C -0.129 4.129 10 C 0.504 3.496 11 O -0.557 6.557 12 N -0.408 5.408 13 C -0.370 4.370 14 H 0.110 0.890 15 C 0.084 3.916 16 N -0.857 5.857 17 Si 0.872 3.128 18 H -0.254 1.254 19 H -0.291 1.291 20 H -0.258 1.258 21 C 0.158 3.842 22 C -0.161 4.161 23 C -0.105 4.105 24 C -0.171 4.171 25 C -0.109 4.109 26 C -0.184 4.184 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.400 0.600 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.280 0.720 42 H 0.138 0.862 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.113 0.887 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.475 1.861 -5.299 10.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.199 4.199 4 C -0.199 4.199 5 C 0.305 3.695 6 O -0.417 6.417 7 N -0.378 5.378 8 C 0.008 3.992 9 C -0.169 4.169 10 C 0.295 3.705 11 O -0.441 6.441 12 N -0.117 5.117 13 C -0.496 4.496 14 H 0.127 0.873 15 C -0.126 4.126 16 N -0.490 5.490 17 Si 0.699 3.301 18 H -0.179 1.179 19 H -0.218 1.218 20 H -0.182 1.182 21 C 0.062 3.938 22 C -0.181 4.181 23 C -0.124 4.124 24 C -0.191 4.191 25 C -0.128 4.128 26 C -0.203 4.203 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.234 0.766 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.121 0.879 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.156 0.844 43 H 0.131 0.869 44 H 0.127 0.873 45 H 0.131 0.869 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -9.264 1.479 -4.444 10.380 hybrid contribution 1.092 0.357 0.510 1.257 sum -8.172 1.836 -3.934 9.254 Atomic orbital electron populations 1.21650 0.92099 1.02788 1.01873 1.20824 0.97981 0.96484 0.93797 1.21874 1.01476 0.93731 1.02789 1.21873 1.01452 1.00603 0.95922 1.20526 0.82184 0.79563 0.87223 1.90699 1.55368 1.48565 1.47097 1.46057 1.07117 1.58826 1.25814 1.21144 0.92953 0.98003 0.87066 1.21506 0.93866 1.02716 0.98831 1.20602 0.82177 0.80891 0.86791 1.90255 1.56349 1.53168 1.44295 1.41433 1.05783 1.39431 1.25027 1.19000 1.09184 1.30909 0.90499 0.87302 1.25469 0.95172 0.93081 0.98927 1.69639 1.14522 1.29454 1.35374 0.86967 0.80992 0.77569 0.84599 1.17873 1.21785 1.18150 1.18493 0.93218 0.91909 0.90198 1.21026 0.95371 1.01179 1.00551 1.20824 0.98910 0.97947 0.94714 1.20928 0.94222 1.03766 1.00143 1.21032 0.95206 0.98417 0.98097 1.22778 1.03783 0.99993 0.93783 0.91973 0.92183 0.91974 0.91877 0.91432 0.92030 0.92034 0.91430 0.91898 0.76557 0.90890 0.90905 0.87862 0.88509 0.90996 0.84394 0.86865 0.87333 0.86922 0.80439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 7.76 37.16 0.29 -0.95 16 2 C -0.09 -0.87 0.87 -155.66 -0.14 -1.01 16 3 C -0.14 -1.17 8.37 37.16 0.31 -0.86 16 4 C -0.14 -1.16 8.37 37.16 0.31 -0.85 16 5 C 0.52 7.22 6.48 -10.99 -0.07 7.15 16 6 O -0.54 -9.78 15.98 5.56 0.09 -9.69 16 7 N -0.73 -9.43 5.34 -60.30 -0.32 -9.75 16 8 C 0.13 2.10 4.98 -4.04 -0.02 2.08 16 9 C -0.13 -2.18 4.65 -27.88 -0.13 -2.30 16 10 C 0.50 10.76 7.57 -10.99 -0.08 10.68 16 11 O -0.56 -12.60 12.39 5.55 0.07 -12.53 16 12 N -0.41 -9.43 2.30 -58.98 -0.14 -9.57 16 13 C -0.37 -8.90 8.01 -14.93 -0.12 -9.02 16 14 H 0.11 2.69 7.69 -52.48 -0.40 2.28 16 15 C 0.08 2.08 4.61 -17.49 -0.08 2.00 16 16 N -0.86 -22.05 13.96 55.49 0.77 -21.28 16 17 Si 0.87 20.45 23.85 -169.99 -4.05 16.40 16 18 H -0.25 -5.77 6.14 56.52 0.35 -5.42 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.26 -6.40 6.48 56.52 0.37 -6.03 16 21 C 0.16 3.66 4.12 -83.70 -0.35 3.31 16 22 C -0.16 -3.55 5.57 -39.37 -0.22 -3.77 16 23 C -0.11 -2.03 9.76 -39.61 -0.39 -2.42 16 24 C -0.17 -3.08 10.04 -39.53 -0.40 -3.48 16 25 C -0.11 -2.06 10.04 -39.61 -0.40 -2.46 16 26 C -0.18 -4.03 9.03 -39.38 -0.36 -4.38 16 27 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.06 0.48 7.56 -51.93 -0.39 0.09 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.48 7.56 -51.93 -0.39 0.08 16 36 H 0.40 4.14 7.31 -40.82 -0.30 3.84 16 37 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 40 H 0.10 1.52 7.74 -51.93 -0.40 1.12 16 41 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 42 H 0.14 3.19 5.70 -52.48 -0.30 2.89 16 43 H 0.11 1.88 8.06 -52.49 -0.42 1.45 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 46 H 0.18 4.04 4.58 -56.00 -0.26 3.78 16 LS Contribution 365.65 15.07 5.51 5.51 Total: -1.00 -29.64 365.65 -7.06 -36.70 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -7.16 Total: 10.50 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.83 Total: -6.29 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.32 Total: -40.60 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: 0.16 Total: -22.22 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.05 Total: 16.40 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.64 -7.06 -36.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194666615.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.218 kcal (2) G-P(sol) polarization free energy of solvation -29.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds