Wall clock time and date at job start Tue Mar 31 2020 12:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47337 * 2 1 4 4 C 1.53001 * 109.47169 * 120.00646 * 2 1 3 5 5 H 1.09002 * 109.29834 * 306.74828 * 4 2 1 6 6 C 1.50250 * 109.38799 * 66.49519 * 4 2 1 7 7 O 1.21281 * 118.62349 * 317.35545 * 6 4 2 8 8 N 1.33720 * 122.75220 * 137.35801 * 6 4 2 9 9 C 1.46006 * 122.92817 * 358.31384 * 8 6 4 10 10 C 1.52982 * 110.04232 * 18.15826 * 9 8 6 11 11 N 1.46897 * 109.38435 * 187.01138 * 4 2 1 12 12 C 1.46896 * 111.00578 * 312.91094 * 11 4 2 13 13 C 1.50701 * 109.47789 * 170.43256 * 12 11 4 14 14 C 1.38297 * 119.93064 * 265.80645 * 13 12 11 15 15 C 1.38104 * 120.06680 * 179.72335 * 14 13 12 16 16 C 1.38872 * 119.93148 * 0.54630 * 15 14 13 17 17 O 1.35745 * 120.07277 * 179.75182 * 16 15 14 18 18 C 1.34831 * 117.00285 * 186.03098 * 17 16 15 19 19 H 1.07999 * 119.99743 * 5.58422 * 18 17 16 20 20 C 1.38658 * 119.99813 * 185.57662 * 18 17 16 21 21 N 1.31551 * 120.00174 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99618 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47356 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46707 * 120.00476 * 22 20 18 25 25 H 1.48497 * 109.47406 * 240.00144 * 22 20 18 26 26 C 1.38884 * 119.86242 * 359.72473 * 16 15 14 27 27 C 1.38105 * 119.92936 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.46789 * 303.30662 * 1 2 3 29 29 H 1.09001 * 109.46953 * 63.30878 * 1 2 3 30 30 H 1.09002 * 109.47266 * 183.30830 * 1 2 3 31 31 H 1.09006 * 109.46603 * 240.00318 * 2 1 3 32 32 H 1.09003 * 109.47099 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47371 * 300.00103 * 3 2 1 34 34 H 1.09006 * 109.47014 * 60.00570 * 3 2 1 35 35 H 0.97002 * 118.53586 * 178.32990 * 8 6 4 36 36 H 1.08996 * 109.37309 * 257.98880 * 9 8 6 37 37 H 1.08999 * 109.28520 * 138.27122 * 9 8 6 38 38 H 1.08999 * 109.59651 * 189.93867 * 10 9 8 39 39 H 1.08999 * 109.59469 * 69.48020 * 10 9 8 40 40 H 1.09005 * 109.46720 * 290.43566 * 12 11 4 41 41 H 1.09005 * 109.46980 * 50.42742 * 12 11 4 42 42 H 1.08000 * 119.96765 * 359.97438 * 14 13 12 43 43 H 1.08002 * 120.03069 * 180.27155 * 15 14 13 44 44 H 0.96995 * 120.00125 * 179.97438 * 21 20 18 45 45 H 1.07995 * 120.03510 * 180.02562 * 26 16 15 46 46 H 1.07996 * 119.96370 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.5798 -0.2800 2.1332 6 6 1.6733 -2.1763 1.1696 7 8 0.5640 -2.4755 0.7812 8 7 2.5188 -3.1550 1.5091 9 6 3.8866 -2.9036 1.9539 10 6 4.0351 -1.4460 2.3940 11 7 3.4992 -0.5755 1.3348 12 6 4.1343 -0.8668 0.0426 13 6 5.5905 -0.4833 0.1006 14 6 5.9934 0.7648 -0.3382 15 6 7.3264 1.1213 -0.2810 16 6 8.2642 0.2208 0.2072 17 8 9.5759 0.5663 0.2600 18 6 10.4479 -0.3948 0.6258 19 1 10.1042 -1.4080 0.7731 20 6 11.7858 -0.0824 0.8125 21 7 12.2043 1.1519 0.6334 22 14 12.9938 -1.4138 1.3200 23 1 12.2768 -2.7071 1.4556 24 1 14.0527 -1.5413 0.2866 25 1 13.6124 -1.0516 2.6204 26 6 7.8572 -1.0339 0.6419 27 6 6.5219 -1.3825 0.5869 28 1 -0.3633 0.5643 0.8589 29 1 -0.3633 0.4616 -0.9182 30 1 -0.3634 -1.0260 0.0593 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 2.2098 -4.0731 1.4573 36 1 4.5762 -3.1059 1.1345 37 1 4.1188 -3.5599 2.7926 38 1 5.0888 -1.2185 2.5558 39 1 3.4780 -1.2841 3.3167 40 1 4.0472 -1.9317 -0.1731 41 1 3.6390 -0.2954 -0.7426 42 1 5.2644 1.4629 -0.7222 43 1 7.6398 2.0977 -0.6197 44 1 13.1401 1.3705 0.7645 45 1 8.5840 -1.7362 1.0224 46 1 6.2048 -2.3579 0.9251 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264567333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:11 Heat of formation + Delta-G solvation = -42.043666 kcal Electronic energy + Delta-G solvation = -27393.021044 eV Core-core repulsion = 23668.852262 eV Total energy + Delta-G solvation = -3724.168781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.22221 -40.68497 -39.02331 -37.72226 -37.01510 -34.43387 -33.98890 -31.80920 -31.60069 -30.32053 -28.28597 -27.66679 -26.87340 -25.59499 -23.81438 -23.54237 -22.14325 -21.59923 -19.86210 -19.64324 -18.80202 -18.37183 -17.72405 -17.00536 -16.74729 -16.34721 -16.30115 -16.01627 -15.68904 -15.44040 -15.35341 -15.19970 -14.39822 -14.32614 -14.11228 -13.93127 -13.83300 -13.53960 -13.40491 -13.11449 -12.96079 -12.87453 -12.74177 -12.52199 -12.40934 -12.29981 -12.19384 -12.09958 -12.02302 -11.66719 -11.39332 -11.12515 -10.86139 -10.75522 -10.13258 -9.70916 -9.25722 -8.83957 -8.44482 -6.11979 0.65598 0.71350 1.37154 1.44863 1.50718 1.54953 2.15675 2.19485 2.72571 3.00327 3.29636 3.46378 3.56702 3.68351 3.87049 3.93050 4.02403 4.03433 4.17485 4.27157 4.32125 4.40664 4.52270 4.58943 4.61652 4.68612 4.73131 4.81336 4.91353 4.92632 4.99693 5.10314 5.12259 5.16679 5.20885 5.29404 5.35375 5.47808 5.57264 5.63925 5.74094 5.76910 5.81729 5.94128 6.00061 6.06623 6.24368 6.28118 7.00917 7.14984 7.83491 8.79207 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024249 B = 0.003001 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.400005 B = 9329.085230 C =10225.701781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.076 4.076 3 C -0.139 4.139 4 C 0.080 3.920 5 H 0.122 0.878 6 C 0.488 3.512 7 O -0.577 6.577 8 N -0.713 5.713 9 C 0.068 3.932 10 C 0.029 3.971 11 N -0.513 5.513 12 C 0.098 3.902 13 C -0.148 4.148 14 C -0.047 4.047 15 C -0.205 4.205 16 C 0.115 3.885 17 O -0.235 6.235 18 C -0.408 4.408 19 H 0.103 0.897 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.017 2.983 23 H -0.249 1.249 24 H -0.271 1.271 25 H -0.270 1.270 26 C -0.239 4.239 27 C -0.060 4.060 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.403 0.597 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.046 0.954 41 H 0.096 0.904 42 H 0.143 0.857 43 H 0.109 0.891 44 H 0.271 0.729 45 H 0.118 0.882 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.695 -7.389 2.840 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.095 4.095 3 C -0.196 4.196 4 C -0.031 4.031 5 H 0.140 0.860 6 C 0.274 3.726 7 O -0.457 6.457 8 N -0.365 5.365 9 C -0.057 4.057 10 C -0.099 4.099 11 N -0.236 5.236 12 C -0.028 4.028 13 C -0.149 4.149 14 C -0.065 4.065 15 C -0.224 4.224 16 C 0.065 3.935 17 O -0.142 6.142 18 C -0.485 4.485 19 H 0.120 0.880 20 C -0.221 4.221 21 N -0.561 5.561 22 Si 0.836 3.164 23 H -0.172 1.172 24 H -0.197 1.197 25 H -0.195 1.195 26 C -0.258 4.258 27 C -0.079 4.079 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.240 0.760 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.064 0.936 41 H 0.114 0.886 42 H 0.161 0.839 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.136 0.864 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.779 -6.495 2.748 20.998 hybrid contribution 0.857 -1.457 0.009 1.691 sum -18.922 -7.952 2.757 20.709 Atomic orbital electron populations 1.22137 0.94080 1.03822 1.01735 1.21029 0.96633 0.96974 0.94840 1.21807 1.01984 0.93802 1.02018 1.22031 0.89257 0.89387 1.02472 0.86032 1.21565 0.84483 0.90700 0.75852 1.90611 1.22744 1.84233 1.48134 1.45670 1.14003 1.09882 1.66966 1.22325 0.81992 0.99694 1.01713 1.22687 1.03358 0.88556 0.95263 1.62664 1.01962 1.53158 1.05775 1.21092 0.90336 0.99553 0.91833 1.19380 0.94611 0.94898 1.05995 1.20807 0.93185 0.96021 0.96530 1.20436 0.93222 0.99832 1.08926 1.19957 0.84839 0.94509 0.94238 1.83955 1.12976 1.39420 1.77802 1.21828 0.88510 0.90202 1.47913 0.88005 1.26561 0.98744 1.00168 0.96670 1.70188 1.17031 1.20529 1.48302 0.84549 0.76897 0.76825 0.78083 1.17221 1.19655 1.19495 1.21216 0.97816 0.97228 1.09553 1.20966 0.90937 0.99269 0.96700 0.92527 0.92368 0.90822 0.91747 0.91632 0.92167 0.92235 0.76035 0.90737 0.87311 0.88309 0.88660 0.93582 0.88619 0.83936 0.87275 0.91952 0.86411 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 8.97 71.98 0.65 -2.35 16 2 C -0.08 -1.38 1.80 -10.80 -0.02 -1.40 16 3 C -0.14 -2.33 8.61 71.98 0.62 -1.71 16 4 C 0.08 1.47 2.05 44.03 0.09 1.56 16 5 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 6 C 0.49 10.11 6.85 87.68 0.60 10.71 16 7 O -0.58 -15.56 14.38 -3.03 -0.04 -15.61 16 8 N -0.71 -11.36 5.36 -466.11 -2.50 -13.85 16 9 C 0.07 0.89 6.18 86.47 0.53 1.42 16 10 C 0.03 0.48 5.43 86.24 0.47 0.94 16 11 N -0.51 -9.61 4.16 -879.99 -3.66 -13.27 16 12 C 0.10 2.05 3.50 85.56 0.30 2.35 16 13 C -0.15 -4.04 5.02 -19.84 -0.10 -4.14 16 14 C -0.05 -1.45 9.67 22.25 0.22 -1.24 16 15 C -0.20 -8.30 9.99 22.39 0.22 -8.08 16 16 C 0.11 5.45 6.65 22.58 0.15 5.60 16 17 O -0.23 -13.78 9.76 -22.69 -0.22 -14.00 16 18 C -0.41 -23.10 9.44 67.92 0.64 -22.46 16 19 H 0.10 5.24 5.31 -2.91 -0.02 5.22 16 20 C -0.02 -1.35 5.49 84.84 0.47 -0.88 16 21 N -0.92 -55.94 13.67 21.61 0.30 -55.64 16 22 Si 1.02 41.80 29.55 68.60 2.03 43.83 16 23 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 25 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 26 C -0.24 -9.54 9.13 22.39 0.20 -9.33 16 27 C -0.06 -1.79 7.87 22.25 0.18 -1.62 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.73 5.09 -2.39 -0.01 1.72 16 31 H 0.06 1.27 6.57 -2.38 -0.02 1.25 16 32 H 0.06 1.22 5.62 -2.39 -0.01 1.21 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.40 5.65 8.84 -92.71 -0.82 4.83 16 36 H 0.07 1.05 4.69 -2.39 -0.01 1.04 16 37 H 0.11 0.93 8.14 -2.39 -0.02 0.92 16 38 H 0.10 1.88 6.34 -2.39 -0.02 1.86 16 39 H 0.10 1.33 8.08 -2.39 -0.02 1.31 16 40 H 0.05 0.94 5.62 -2.38 -0.01 0.92 16 41 H 0.10 1.92 4.68 -2.38 -0.01 1.91 16 42 H 0.14 3.53 7.50 -2.91 -0.02 3.51 16 43 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 44 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 45 H 0.12 4.82 5.72 -2.91 -0.02 4.80 16 46 H 0.14 3.12 5.59 -2.91 -0.02 3.10 16 Total: -1.00 -71.00 349.68 1.32 -69.67 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 0.21 Total: 29.47 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 5.21 Total: -30.61 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -5.86 Total: -82.76 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.27 Total: -29.61 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -71.00 1.32 -69.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264567333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.629 kcal (2) G-P(sol) polarization free energy of solvation -70.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds