Wall clock time and date at job start Tue Mar 31 2020 13:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47349 * 2 1 4 4 C 1.50699 * 109.47203 * 120.00186 * 2 1 3 5 5 O 1.21278 * 120.00075 * 0.02562 * 4 2 1 6 6 N 1.34779 * 119.99709 * 179.97438 * 4 2 1 7 7 C 1.46502 * 120.00117 * 0.02562 * 6 4 2 8 8 C 1.46500 * 119.99716 * 179.97438 * 6 4 2 9 9 C 1.50693 * 109.47467 * 270.00207 * 8 6 4 10 10 C 1.38377 * 119.84902 * 269.72518 * 9 8 6 11 11 C 1.37943 * 120.14831 * 179.76497 * 10 9 8 12 12 C 1.39644 * 119.84863 * 0.53008 * 11 10 9 13 13 C 1.47724 * 120.15355 * 179.70282 * 12 11 10 14 14 O 1.21593 * 119.99955 * 137.93677 * 13 12 11 15 15 N 1.34780 * 119.99837 * 317.93558 * 13 12 11 16 16 C 1.46497 * 119.99973 * 182.06085 * 15 13 12 17 17 C 1.36874 * 119.99751 * 2.06258 * 15 13 12 18 18 H 1.07994 * 119.99951 * 310.81332 * 17 15 13 19 19 C 1.39046 * 119.99507 * 130.81850 * 17 15 13 20 20 N 1.31370 * 119.99652 * 170.07512 * 19 17 15 21 21 Si 1.86794 * 120.00556 * 350.07270 * 19 17 15 22 22 H 1.48501 * 109.47412 * 94.78618 * 21 19 17 23 23 H 1.48503 * 109.47495 * 214.79461 * 21 19 17 24 24 H 1.48499 * 109.46833 * 334.78818 * 21 19 17 25 25 C 1.39656 * 119.69664 * 359.72544 * 12 11 10 26 26 C 1.37932 * 119.84640 * 359.97438 * 25 12 11 27 27 H 1.09002 * 109.47134 * 299.99788 * 1 2 3 28 28 H 1.09001 * 109.47090 * 59.99621 * 1 2 3 29 29 H 1.09003 * 109.47077 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47134 * 240.00212 * 2 1 3 31 31 H 1.09001 * 109.47291 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47334 * 300.00230 * 3 2 1 33 33 H 1.09002 * 109.46829 * 60.00025 * 3 2 1 34 34 H 1.08996 * 109.47434 * 89.99769 * 7 6 4 35 35 H 1.09001 * 109.46921 * 209.99647 * 7 6 4 36 36 H 1.09001 * 109.46984 * 329.98942 * 7 6 4 37 37 H 1.09001 * 109.47354 * 30.00772 * 8 6 4 38 38 H 1.09004 * 109.46998 * 150.00057 * 8 6 4 39 39 H 1.07994 * 119.92223 * 0.02562 * 10 9 8 40 40 H 1.07999 * 120.07347 * 180.23808 * 11 10 9 41 41 H 1.09002 * 109.47043 * 84.70065 * 16 15 13 42 42 H 1.08998 * 109.47129 * 204.70460 * 16 15 13 43 43 H 1.09007 * 109.47264 * 324.70470 * 16 15 13 44 44 H 0.97002 * 119.99876 * 179.97438 * 20 19 17 45 45 H 1.08002 * 120.07123 * 179.97438 * 25 12 11 46 46 H 1.07998 * 119.92411 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2442 -1.1718 2.0285 6 7 3.3574 -0.8340 1.4434 7 6 4.3094 -0.2772 0.4790 8 6 3.8458 -1.5241 2.6398 9 6 4.0139 -0.5301 3.7598 10 6 5.2241 0.1195 3.9283 11 6 5.3833 1.0342 4.9484 12 6 4.3233 1.2959 5.8190 13 6 4.4884 2.2693 6.9178 14 8 3.5979 3.0577 7.1706 15 7 5.6262 2.2836 7.6401 16 6 5.7722 3.2183 8.7586 17 6 6.6454 1.4246 7.3285 18 1 6.4414 0.3737 7.1864 19 6 7.9433 1.9053 7.1951 20 7 8.9474 1.0647 7.0905 21 14 8.2592 3.7460 7.1645 22 1 8.6006 4.2126 8.5323 23 1 9.3879 4.0394 6.2451 24 1 7.0400 4.4496 6.6915 25 6 3.1063 0.6328 5.6463 26 6 2.9590 -0.2748 4.6182 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 4.5458 0.7507 0.7539 35 1 5.2218 -0.8735 0.4835 36 1 3.8689 -0.2947 -0.5179 37 1 3.1277 -2.2884 2.9370 38 1 4.8058 -1.9926 2.4226 39 1 6.0444 -0.0872 3.2570 40 1 6.3272 1.5432 5.0765 41 1 5.3268 2.7855 9.6543 42 1 6.8303 3.4108 8.9355 43 1 5.2679 4.1543 8.5180 44 1 9.8528 1.4000 6.9970 45 1 2.2826 0.8303 6.3163 46 1 2.0186 -0.7886 4.4838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265984550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:17 Heat of formation + Delta-G solvation = -34.074974 kcal Electronic energy + Delta-G solvation = -27183.522615 eV Core-core repulsion = 23459.699382 eV Total energy + Delta-G solvation = -3723.823233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.33351 -39.34704 -37.76105 -35.63180 -34.94990 -34.70244 -32.00992 -31.47116 -30.37280 -28.08180 -27.12718 -26.69457 -25.94051 -24.81180 -22.95132 -21.96750 -21.29016 -19.26052 -18.97735 -17.71428 -17.27313 -16.34395 -16.24313 -15.86860 -15.37314 -14.90577 -14.67126 -14.55010 -14.43506 -13.95959 -13.72093 -13.34692 -13.14142 -12.86550 -12.78672 -12.69812 -12.58803 -12.47717 -12.38626 -12.34433 -11.98270 -11.81102 -11.64935 -11.48361 -11.30924 -11.23127 -11.06364 -10.94652 -10.46664 -10.35461 -10.10256 -9.74554 -9.31335 -8.85019 -8.67478 -8.34387 -8.13132 -7.73649 -6.52238 -4.26878 1.53598 2.03913 2.60493 2.98455 3.02090 3.15374 3.23844 3.69966 4.05316 4.30629 4.33797 4.54657 4.66990 4.75652 4.85982 4.88305 5.06191 5.07444 5.21309 5.32909 5.41940 5.42568 5.52815 5.58854 5.62725 5.65418 5.72297 5.76920 5.79861 6.00595 6.02955 6.08056 6.11354 6.22313 6.26487 6.39046 6.45369 6.49900 6.68646 6.95463 7.04341 7.19503 7.31795 7.33189 7.54434 8.00451 8.14313 8.19924 8.86148 9.21458 9.57979 10.56158 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018754 B = 0.003486 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.680325 B = 8029.507523 C = 8457.506461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 C -0.158 4.158 4 C 0.517 3.483 5 O -0.535 6.535 6 N -0.610 5.610 7 C 0.075 3.925 8 C 0.157 3.843 9 C -0.107 4.107 10 C -0.122 4.122 11 C -0.054 4.054 12 C -0.088 4.088 13 C 0.523 3.477 14 O -0.592 6.592 15 N -0.465 5.465 16 C 0.076 3.924 17 C -0.343 4.343 18 H 0.104 0.896 19 C 0.068 3.932 20 N -0.863 5.863 21 Si 0.878 3.122 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.260 1.260 25 C -0.086 4.086 26 C -0.114 4.114 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.146 0.854 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.276 0.724 45 H 0.120 0.880 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.852 -3.085 -15.661 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 C -0.215 4.215 4 C 0.305 3.695 5 O -0.412 6.412 6 N -0.343 5.343 7 C -0.068 4.068 8 C 0.035 3.965 9 C -0.108 4.108 10 C -0.141 4.141 11 C -0.072 4.072 12 C -0.091 4.091 13 C 0.313 3.687 14 O -0.477 6.477 15 N -0.186 5.186 16 C -0.067 4.067 17 C -0.470 4.470 18 H 0.122 0.878 19 C -0.140 4.140 20 N -0.498 5.498 21 Si 0.705 3.295 22 H -0.199 1.199 23 H -0.213 1.213 24 H -0.184 1.184 25 C -0.105 4.105 26 C -0.132 4.132 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.135 0.865 40 H 0.163 0.837 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.138 0.862 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.454 -2.982 -15.101 17.102 hybrid contribution 0.721 0.880 0.165 1.150 sum -6.733 -2.101 -14.936 16.517 Atomic orbital electron populations 1.21606 0.92585 1.02647 1.02109 1.21272 0.98210 0.97399 0.96496 1.22060 1.02480 0.94041 1.02949 1.20713 0.81761 0.79337 0.87687 1.90675 1.54822 1.48404 1.47257 1.47903 1.05895 1.57451 1.23037 1.21999 0.93233 0.99432 0.92139 1.20383 1.00353 0.93020 0.82698 1.20124 0.94415 0.99320 0.96990 1.20915 0.96398 0.97968 0.98836 1.21682 0.98400 0.95348 0.91785 1.19904 0.94297 0.98094 0.96817 1.18504 0.83537 0.84436 0.82205 1.90638 1.43128 1.42664 1.71283 1.43502 1.14833 1.34355 1.25900 1.21780 1.00619 0.93999 0.90280 1.19071 0.85841 0.91950 1.50157 0.87841 1.25485 0.95515 0.98304 0.94701 1.69657 0.99615 1.34966 1.45562 0.86851 0.78761 0.85548 0.78382 1.19898 1.21257 1.18378 1.21123 0.96328 0.95423 0.97614 1.20898 0.98463 0.98759 0.95105 0.91823 0.92238 0.92091 0.88858 0.90974 0.91625 0.91911 0.91916 0.90929 0.90902 0.89244 0.89738 0.86489 0.83678 0.93310 0.92144 0.92198 0.91363 0.86173 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 8.48 37.16 0.32 -0.91 16 2 C -0.11 -1.03 2.45 -91.77 -0.22 -1.25 16 3 C -0.16 -1.32 8.83 37.16 0.33 -1.00 16 4 C 0.52 6.51 7.07 -10.98 -0.08 6.43 16 5 O -0.54 -8.64 15.07 5.56 0.08 -8.55 16 6 N -0.61 -6.86 2.86 -182.96 -0.52 -7.39 16 7 C 0.07 0.58 8.85 59.85 0.53 1.11 16 8 C 0.16 1.97 5.57 -5.20 -0.03 1.94 16 9 C -0.11 -1.69 5.47 -104.52 -0.57 -2.26 16 10 C -0.12 -2.05 9.68 -39.64 -0.38 -2.44 16 11 C -0.05 -1.09 8.10 -39.17 -0.32 -1.41 16 12 C -0.09 -1.93 5.29 -104.97 -0.55 -2.48 16 13 C 0.52 12.89 7.28 -12.38 -0.09 12.80 16 14 O -0.59 -15.63 16.61 5.28 0.09 -15.54 16 15 N -0.47 -11.43 2.41 -123.32 -0.30 -11.73 16 16 C 0.08 1.68 8.82 59.85 0.53 2.21 16 17 C -0.34 -8.74 6.61 -15.00 -0.10 -8.84 16 18 H 0.10 2.84 7.47 -52.49 -0.39 2.45 16 19 C 0.07 1.72 5.17 -17.45 -0.09 1.63 16 20 N -0.86 -22.86 13.95 55.50 0.77 -22.08 16 21 Si 0.88 19.90 24.87 -169.99 -4.23 15.68 16 22 H -0.27 -5.98 6.89 56.52 0.39 -5.60 16 23 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.26 -6.06 7.03 56.52 0.40 -5.66 16 25 C -0.09 -1.70 9.66 -39.16 -0.38 -2.07 16 26 C -0.11 -1.98 9.68 -39.64 -0.38 -2.37 16 27 H 0.06 0.70 8.10 -51.93 -0.42 0.27 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 30 H 0.09 0.65 7.40 -51.93 -0.38 0.26 16 31 H 0.07 0.55 4.53 -51.93 -0.24 0.32 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.52 6.95 -51.93 -0.36 0.16 16 35 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16 36 H 0.07 0.41 6.01 -51.93 -0.31 0.10 16 37 H 0.09 1.19 7.36 -51.93 -0.38 0.80 16 38 H 0.08 0.87 7.83 -51.93 -0.41 0.46 16 39 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.15 3.20 6.26 -52.49 -0.33 2.87 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.31 4.25 -51.93 -0.22 1.09 16 43 H 0.06 1.29 7.56 -51.93 -0.39 0.90 16 44 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 45 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 46 H 0.12 2.07 7.56 -52.49 -0.40 1.67 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -31.40 368.08 -6.81 -38.20 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.75 Total: 4.79 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -1.50 Total: 1.08 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: -0.05 Total: -41.20 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: 0.17 Total: -24.10 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.23 Total: 15.68 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.40 -6.81 -38.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265984550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.129 kcal (2) G-P(sol) polarization free energy of solvation -31.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds