Wall clock time and date at job start Tue Mar 31 2020 13:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47349 * 2 1 4 4 C 1.50699 * 109.47203 * 120.00186 * 2 1 3 5 5 O 1.21278 * 120.00075 * 0.02562 * 4 2 1 6 6 N 1.34779 * 119.99709 * 179.97438 * 4 2 1 7 7 C 1.46502 * 120.00117 * 0.02562 * 6 4 2 8 8 C 1.46500 * 119.99716 * 179.97438 * 6 4 2 9 9 C 1.50693 * 109.47467 * 270.00207 * 8 6 4 10 10 C 1.38377 * 119.84902 * 269.72518 * 9 8 6 11 11 C 1.37943 * 120.14831 * 179.76497 * 10 9 8 12 12 C 1.39644 * 119.84863 * 0.53008 * 11 10 9 13 13 C 1.47724 * 120.15355 * 179.70282 * 12 11 10 14 14 O 1.21593 * 119.99955 * 137.93677 * 13 12 11 15 15 N 1.34780 * 119.99837 * 317.93558 * 13 12 11 16 16 C 1.46497 * 119.99973 * 182.06085 * 15 13 12 17 17 C 1.36874 * 119.99751 * 2.06258 * 15 13 12 18 18 H 1.07994 * 119.99951 * 310.81332 * 17 15 13 19 19 C 1.39046 * 119.99507 * 130.81850 * 17 15 13 20 20 N 1.31370 * 119.99652 * 170.07512 * 19 17 15 21 21 Si 1.86794 * 120.00556 * 350.07270 * 19 17 15 22 22 H 1.48501 * 109.47412 * 94.78618 * 21 19 17 23 23 H 1.48503 * 109.47495 * 214.79461 * 21 19 17 24 24 H 1.48499 * 109.46833 * 334.78818 * 21 19 17 25 25 C 1.39656 * 119.69664 * 359.72544 * 12 11 10 26 26 C 1.37932 * 119.84640 * 359.97438 * 25 12 11 27 27 H 1.09002 * 109.47134 * 299.99788 * 1 2 3 28 28 H 1.09001 * 109.47090 * 59.99621 * 1 2 3 29 29 H 1.09003 * 109.47077 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47134 * 240.00212 * 2 1 3 31 31 H 1.09001 * 109.47291 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47334 * 300.00230 * 3 2 1 33 33 H 1.09002 * 109.46829 * 60.00025 * 3 2 1 34 34 H 1.08996 * 109.47434 * 89.99769 * 7 6 4 35 35 H 1.09001 * 109.46921 * 209.99647 * 7 6 4 36 36 H 1.09001 * 109.46984 * 329.98942 * 7 6 4 37 37 H 1.09001 * 109.47354 * 30.00772 * 8 6 4 38 38 H 1.09004 * 109.46998 * 150.00057 * 8 6 4 39 39 H 1.07994 * 119.92223 * 0.02562 * 10 9 8 40 40 H 1.07999 * 120.07347 * 180.23808 * 11 10 9 41 41 H 1.09002 * 109.47043 * 84.70065 * 16 15 13 42 42 H 1.08998 * 109.47129 * 204.70460 * 16 15 13 43 43 H 1.09007 * 109.47264 * 324.70470 * 16 15 13 44 44 H 0.97002 * 119.99876 * 179.97438 * 20 19 17 45 45 H 1.08002 * 120.07123 * 179.97438 * 25 12 11 46 46 H 1.07998 * 119.92411 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2442 -1.1718 2.0285 6 7 3.3574 -0.8340 1.4434 7 6 4.3094 -0.2772 0.4790 8 6 3.8458 -1.5241 2.6398 9 6 4.0139 -0.5301 3.7598 10 6 5.2241 0.1195 3.9283 11 6 5.3833 1.0342 4.9484 12 6 4.3233 1.2959 5.8190 13 6 4.4884 2.2693 6.9178 14 8 3.5979 3.0577 7.1706 15 7 5.6262 2.2836 7.6401 16 6 5.7722 3.2183 8.7586 17 6 6.6454 1.4246 7.3285 18 1 6.4414 0.3737 7.1864 19 6 7.9433 1.9053 7.1951 20 7 8.9474 1.0647 7.0905 21 14 8.2592 3.7460 7.1645 22 1 8.6006 4.2126 8.5323 23 1 9.3879 4.0394 6.2451 24 1 7.0400 4.4496 6.6915 25 6 3.1063 0.6328 5.6463 26 6 2.9590 -0.2748 4.6182 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 4.5458 0.7507 0.7539 35 1 5.2218 -0.8735 0.4835 36 1 3.8689 -0.2947 -0.5179 37 1 3.1277 -2.2884 2.9370 38 1 4.8058 -1.9926 2.4226 39 1 6.0444 -0.0872 3.2570 40 1 6.3272 1.5432 5.0765 41 1 5.3268 2.7855 9.6543 42 1 6.8303 3.4108 8.9355 43 1 5.2679 4.1543 8.5180 44 1 9.8528 1.4000 6.9970 45 1 2.2826 0.8303 6.3163 46 1 2.0186 -0.7886 4.4838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265984550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:17 Heat of formation + Delta-G solvation = -52.564829 kcal Electronic energy + Delta-G solvation = -27184.324395 eV Core-core repulsion = 23459.699382 eV Total energy + Delta-G solvation = -3724.625013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.42395 -40.95731 -39.31855 -36.91485 -36.63579 -35.52675 -33.99547 -32.79782 -31.87112 -29.28321 -28.22409 -27.57902 -27.34651 -26.55521 -24.02238 -23.45437 -22.57248 -21.06647 -19.87028 -19.53677 -18.21034 -18.08867 -17.37138 -17.14906 -16.84651 -16.45695 -16.26975 -15.91967 -15.46986 -15.33659 -15.05325 -14.71862 -14.60414 -14.34327 -14.14794 -14.09980 -13.85501 -13.60862 -13.41095 -13.31649 -13.22704 -13.09951 -12.83284 -12.79874 -12.71275 -12.52974 -12.28877 -11.96932 -11.95364 -11.85781 -11.81750 -11.23304 -10.74006 -10.67132 -9.86932 -9.72949 -9.67594 -9.57336 -8.49963 -6.28236 0.03344 0.53562 1.19858 1.30950 1.42031 1.66041 1.81136 2.15590 2.19505 2.57252 2.81730 3.05389 3.56210 3.82786 3.90884 4.00236 4.05668 4.08491 4.12758 4.25147 4.32129 4.37637 4.49869 4.53036 4.53935 4.66447 4.71097 4.74345 4.76103 4.78812 4.84746 4.94492 4.99948 5.03565 5.07531 5.17051 5.33536 5.36027 5.41882 5.44871 5.52929 5.61666 5.64142 6.02806 6.05990 6.16834 6.43853 6.88528 7.22292 7.24853 7.63838 8.61577 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018754 B = 0.003486 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.680325 B = 8029.507523 C = 8457.506461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.107 4.107 3 C -0.155 4.155 4 C 0.505 3.495 5 O -0.580 6.580 6 N -0.608 5.608 7 C 0.065 3.935 8 C 0.158 3.842 9 C -0.089 4.089 10 C -0.111 4.111 11 C -0.065 4.065 12 C -0.121 4.121 13 C 0.516 3.484 14 O -0.618 6.618 15 N -0.474 5.474 16 C 0.071 3.929 17 C -0.338 4.338 18 H 0.076 0.924 19 C 0.041 3.959 20 N -0.892 5.892 21 Si 0.926 3.074 22 H -0.256 1.256 23 H -0.277 1.277 24 H -0.273 1.273 25 C -0.094 4.094 26 C -0.113 4.113 27 H 0.037 0.963 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.127 0.873 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.034 0.966 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.117 0.883 39 H 0.152 0.848 40 H 0.125 0.875 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.282 0.718 45 H 0.114 0.886 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.869 -3.235 -18.350 19.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.128 4.128 3 C -0.212 4.212 4 C 0.295 3.705 5 O -0.460 6.460 6 N -0.340 5.340 7 C -0.076 4.076 8 C 0.035 3.965 9 C -0.090 4.090 10 C -0.129 4.129 11 C -0.083 4.083 12 C -0.124 4.124 13 C 0.307 3.693 14 O -0.506 6.506 15 N -0.194 5.194 16 C -0.071 4.071 17 C -0.466 4.466 18 H 0.094 0.906 19 C -0.165 4.165 20 N -0.528 5.528 21 Si 0.751 3.249 22 H -0.182 1.182 23 H -0.203 1.203 24 H -0.198 1.198 25 C -0.113 4.113 26 C -0.132 4.132 27 H 0.056 0.944 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.144 0.856 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.169 0.831 40 H 0.143 0.857 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.132 0.868 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.435 -3.127 -17.798 19.182 hybrid contribution 0.358 0.847 0.941 1.316 sum -6.076 -2.280 -16.857 18.063 Atomic orbital electron populations 1.21607 0.93072 1.02095 1.02114 1.21331 0.97797 0.97698 0.95932 1.22065 1.03147 0.93310 1.02705 1.21455 0.81901 0.78834 0.88312 1.90655 1.56057 1.50339 1.48962 1.47989 1.06185 1.56934 1.22864 1.22304 0.93482 0.99378 0.92461 1.20409 1.01932 0.91894 0.82218 1.20506 0.93130 0.98501 0.96883 1.21183 0.97637 0.96217 0.97908 1.21560 0.97110 0.96601 0.93065 1.19845 0.95832 0.99403 0.97290 1.19002 0.83130 0.84575 0.82613 1.90594 1.43825 1.43849 1.72304 1.43634 1.14672 1.34560 1.26537 1.21898 1.01190 0.93820 0.90190 1.18755 0.86309 0.90898 1.50625 0.90624 1.25887 0.95010 1.01393 0.94193 1.69708 1.00180 1.36531 1.46421 0.86094 0.78169 0.81336 0.79273 1.18170 1.20296 1.19794 1.21143 0.95552 0.96153 0.98481 1.21017 0.99362 0.98086 0.94734 0.94356 0.89641 0.92950 0.85563 0.89894 0.89314 0.94711 0.92199 0.88917 0.88237 0.90043 0.86450 0.83073 0.85723 0.91767 0.91571 0.91916 0.90733 0.86769 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.48 71.98 0.61 -1.66 16 2 C -0.11 -1.68 2.45 -11.54 -0.03 -1.70 16 3 C -0.16 -2.20 8.83 71.98 0.64 -1.56 16 4 C 0.51 11.89 7.07 87.66 0.62 12.51 16 5 O -0.58 -18.64 15.07 -3.02 -0.05 -18.69 16 6 N -0.61 -11.97 2.86 -851.14 -2.43 -14.40 16 7 C 0.07 0.74 8.85 127.77 1.13 1.87 16 8 C 0.16 3.54 5.57 85.63 0.48 4.02 16 9 C -0.09 -2.67 5.47 -19.80 -0.11 -2.77 16 10 C -0.11 -3.55 9.68 22.23 0.22 -3.33 16 11 C -0.06 -2.66 8.10 22.54 0.18 -2.48 16 12 C -0.12 -5.46 5.29 -20.09 -0.11 -5.57 16 13 C 0.52 26.21 7.28 86.75 0.63 26.84 16 14 O -0.62 -33.67 16.61 -4.01 -0.07 -33.73 16 15 N -0.47 -23.71 2.41 -662.33 -1.60 -25.31 16 16 C 0.07 3.14 8.82 127.77 1.13 4.27 16 17 C -0.34 -17.59 6.61 84.10 0.56 -17.03 16 18 H 0.08 4.31 7.47 -2.91 -0.02 4.29 16 19 C 0.04 2.06 5.17 84.96 0.44 2.50 16 20 N -0.89 -47.09 13.95 21.68 0.30 -46.79 16 21 Si 0.93 40.45 24.87 68.60 1.71 42.15 16 22 H -0.26 -10.50 6.89 99.48 0.69 -9.81 16 23 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 24 H -0.27 -12.49 7.03 99.48 0.70 -11.79 16 25 C -0.09 -3.85 9.66 22.54 0.22 -3.63 16 26 C -0.11 -3.98 9.68 22.23 0.22 -3.76 16 27 H 0.04 0.84 8.10 -2.39 -0.02 0.82 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 30 H 0.13 1.19 7.40 -2.39 -0.02 1.17 16 31 H 0.08 0.99 4.53 -2.39 -0.01 0.98 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.76 6.95 -2.39 -0.02 0.74 16 35 H 0.09 0.73 7.89 -2.39 -0.02 0.71 16 36 H 0.10 0.63 6.01 -2.39 -0.01 0.61 16 37 H 0.08 2.02 7.36 -2.39 -0.02 2.00 16 38 H 0.12 1.91 7.83 -2.39 -0.02 1.89 16 39 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 40 H 0.12 5.62 6.26 -2.91 -0.02 5.60 16 41 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.07 2.80 4.25 -2.39 -0.01 2.79 16 43 H 0.06 2.70 7.56 -2.38 -0.02 2.69 16 44 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 45 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 46 H 0.13 4.35 7.56 -2.91 -0.02 4.33 16 Total: -1.00 -70.32 368.08 5.64 -64.68 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.95 Total: 23.58 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 6.82 Total: 8.51 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -3.73 Total: -86.50 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -0.11 Total: -52.42 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 1.71 Total: 42.15 kcal Total: -70.32 5.64 -64.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265984550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.113 kcal (2) G-P(sol) polarization free energy of solvation -70.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds