Wall clock time and date at job start Tue Mar 31 2020 13:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46905 * 2 1 4 4 H 1.08996 * 110.35365 * 307.14615 * 3 2 1 5 5 C 1.54944 * 110.30859 * 185.00100 * 3 2 1 6 6 C 1.55304 * 100.97800 * 204.65983 * 5 3 2 7 7 C 1.54384 * 102.25492 * 34.11596 * 6 5 3 8 8 H 1.08998 * 109.82952 * 98.24246 * 7 6 5 9 9 C 1.50696 * 109.83063 * 219.12939 * 7 6 5 10 10 O 1.21280 * 120.00554 * 114.99208 * 9 7 6 11 11 N 1.34781 * 119.99744 * 294.99886 * 9 7 6 12 12 C 1.46496 * 120.00001 * 359.97438 * 11 9 7 13 13 C 1.50697 * 109.47152 * 90.00392 * 12 11 9 14 14 H 1.08007 * 119.99600 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00125 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00137 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99703 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47464 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47026 * 120.00455 * 17 15 13 20 20 H 1.48510 * 109.46884 * 240.00235 * 17 15 13 21 21 C 1.46500 * 119.99791 * 180.02562 * 11 9 7 22 22 C 1.50707 * 109.47394 * 89.99821 * 21 11 9 23 23 C 1.38227 * 119.61801 * 94.72503 * 22 21 11 24 24 C 1.38631 * 119.15621 * 179.75894 * 23 22 21 25 25 C 1.38666 * 118.42234 * 0.50392 * 24 23 22 26 26 C 1.38184 * 119.16742 * 359.73963 * 25 24 23 27 27 N 1.31858 * 119.61473 * 275.00052 * 22 21 11 28 28 O 1.43240 * 107.58460 * 338.63785 * 7 6 5 29 29 H 1.08997 * 109.47077 * 60.00005 * 1 2 3 30 30 H 1.09002 * 109.46676 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47025 * 299.99557 * 1 2 3 32 32 H 1.08995 * 109.47025 * 240.00443 * 2 1 3 33 33 H 1.08997 * 109.47077 * 119.99995 * 2 1 3 34 34 H 1.09002 * 111.12633 * 86.72113 * 5 3 2 35 35 H 1.08995 * 111.12590 * 322.60114 * 5 3 2 36 36 H 1.09006 * 110.84773 * 152.30089 * 6 5 3 37 37 H 1.08993 * 110.84888 * 275.71592 * 6 5 3 38 38 H 1.09002 * 109.46936 * 210.00042 * 12 11 9 39 39 H 1.09004 * 109.47210 * 330.00388 * 12 11 9 40 40 H 0.97001 * 119.99778 * 179.97438 * 16 15 13 41 41 H 1.09001 * 109.47163 * 209.99808 * 21 11 9 42 42 H 1.08997 * 109.47408 * 329.99759 * 21 11 9 43 43 H 1.07995 * 120.41686 * 359.97438 * 23 22 21 44 44 H 1.08001 * 120.78442 * 180.26585 * 24 23 22 45 45 H 1.08004 * 120.41861 * 179.75606 * 25 24 23 46 46 H 1.07997 * 119.62083 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5846 2.0057 -0.8146 5 6 3.5841 1.4671 -0.1267 6 6 3.9125 2.8381 0.5248 7 6 2.8331 2.9460 1.6232 8 1 3.2505 2.6416 2.5830 9 6 2.3324 4.3646 1.7105 10 8 1.1805 4.6196 1.4294 11 7 3.1648 5.3502 2.1008 12 6 4.5561 5.0422 2.4408 13 6 5.4115 5.1527 1.2050 14 1 4.9635 5.4256 0.2609 15 6 6.7660 4.9066 1.2799 16 7 7.3115 4.5748 2.4296 17 14 7.8263 5.0443 -0.2518 18 1 6.9781 5.4297 -1.4081 19 1 8.8715 6.0776 -0.0391 20 1 8.4727 3.7356 -0.5258 21 6 2.6779 6.7293 2.1862 22 6 2.1336 6.9853 3.5680 23 6 2.9483 7.5546 4.5286 24 6 2.4362 7.7905 5.7950 25 6 1.1211 7.4337 6.0521 26 6 0.3683 6.8639 5.0431 27 7 0.8872 6.6586 3.8481 28 8 1.7574 2.0726 1.2602 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8929 1.4447 -1.1718 35 1 4.0371 0.6482 0.4319 36 1 4.9111 2.8307 0.9617 37 1 3.8143 3.6457 -0.2006 38 1 4.9110 5.7472 3.1926 39 1 4.6177 4.0281 2.8358 40 1 8.2644 4.4012 2.4822 41 1 3.4991 7.4176 1.9859 42 1 1.8883 6.8820 1.4505 43 1 3.9698 7.8154 4.2943 44 1 3.0482 8.2379 6.5642 45 1 0.6905 7.5993 7.0287 46 1 -0.6566 6.5829 5.2355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268081326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:44 Heat of formation + Delta-G solvation = -52.156383 kcal Electronic energy + Delta-G solvation = -27722.256659 eV Core-core repulsion = 23997.649358 eV Total energy + Delta-G solvation = -3724.607302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.13219 -39.59498 -37.85919 -35.09915 -33.44680 -32.89392 -32.16729 -31.74717 -31.12828 -28.56471 -27.46605 -26.04756 -23.69432 -23.35051 -22.80816 -21.79711 -21.19694 -20.58885 -18.42429 -17.11022 -16.67654 -16.37599 -16.01637 -15.77608 -15.51179 -15.23015 -15.21476 -14.51302 -13.96159 -13.64981 -13.56434 -13.31240 -13.07826 -12.94186 -12.78341 -12.50416 -12.40240 -12.37703 -11.75725 -11.50520 -11.46943 -11.35123 -11.27731 -11.02257 -10.94428 -10.83572 -10.67007 -10.46988 -10.18570 -10.11185 -9.77935 -9.62633 -9.55188 -9.09353 -8.87710 -8.68438 -8.36836 -7.73865 -6.25236 -4.30865 1.32362 1.54750 3.15616 3.25859 3.28802 3.46768 3.67912 4.13681 4.25616 4.48124 4.64625 4.94325 4.97685 5.01563 5.06444 5.09440 5.27453 5.30526 5.35678 5.40832 5.47410 5.54759 5.60946 5.78673 5.81219 5.84776 5.96179 6.04062 6.04339 6.07933 6.14602 6.18799 6.24990 6.37713 6.38926 6.42529 6.48604 6.67599 6.73794 6.89406 6.94903 7.10667 7.40260 7.57581 7.70030 7.98171 8.30205 8.38455 8.74263 9.10644 9.35206 10.80917 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008109 B = 0.006109 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3452.074084 B = 4582.340740 C = 7505.831556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.078 3.922 4 H 0.066 0.934 5 C -0.157 4.157 6 C -0.127 4.127 7 C 0.074 3.926 8 H 0.096 0.904 9 C 0.506 3.494 10 O -0.537 6.537 11 N -0.593 5.593 12 C 0.236 3.764 13 C -0.531 4.531 14 H 0.064 0.936 15 C 0.066 3.934 16 N -0.889 5.889 17 Si 0.890 3.110 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.169 3.831 22 C 0.120 3.880 23 C -0.156 4.156 24 C -0.081 4.081 25 C -0.182 4.182 26 C 0.092 3.908 27 N -0.458 5.458 28 O -0.355 6.355 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.265 0.735 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.137 0.863 44 H 0.130 0.870 45 H 0.128 0.872 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.576 -1.017 1.895 6.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C 0.020 3.980 4 H 0.084 0.916 5 C -0.195 4.195 6 C -0.165 4.165 7 C 0.014 3.986 8 H 0.114 0.886 9 C 0.293 3.707 10 O -0.414 6.414 11 N -0.326 5.326 12 C 0.116 3.884 13 C -0.570 4.570 14 H 0.082 0.918 15 C -0.137 4.137 16 N -0.527 5.527 17 Si 0.718 3.282 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.208 1.208 21 C 0.044 3.956 22 C -0.019 4.019 23 C -0.177 4.177 24 C -0.107 4.107 25 C -0.203 4.203 26 C -0.065 4.065 27 N -0.167 5.167 28 O -0.273 6.273 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.100 0.900 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.155 0.845 44 H 0.148 0.852 45 H 0.146 0.854 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.703 -1.363 1.281 7.927 hybrid contribution 1.614 0.566 0.053 1.711 sum -6.089 -0.797 1.334 6.284 Atomic orbital electron populations 1.21719 0.95553 1.00877 1.02492 1.21636 0.96582 0.95188 1.02205 1.23032 0.94549 0.93212 0.87203 0.91593 1.23406 0.95239 0.98992 1.01858 1.23236 1.00438 0.95939 0.96851 1.22498 0.87444 0.88219 1.00472 0.88598 1.20815 0.85558 0.87379 0.76981 1.90636 1.17891 1.83670 1.49247 1.48122 1.13134 1.05403 1.65920 1.19496 0.74950 0.97416 0.96542 1.21520 0.92445 1.47701 0.95306 0.91758 1.24898 0.97716 0.94985 0.96102 1.69930 1.12330 1.46311 1.24175 0.86556 0.80518 0.77926 0.83249 1.19561 1.20900 1.20803 1.20101 0.99333 0.85062 0.91058 1.21932 0.89427 0.93038 0.97513 1.22112 1.01290 1.00378 0.93881 1.21537 0.95259 0.97210 0.96725 1.22086 0.95547 1.01950 1.00675 1.22769 0.99925 0.95207 0.88628 1.67660 1.13341 1.14729 1.21007 1.88454 1.42776 1.58770 1.37321 0.92989 0.93259 0.91884 0.91137 0.91357 0.90342 0.90602 0.86723 0.90024 0.94671 0.94566 0.92536 0.88731 0.89281 0.84483 0.85164 0.85361 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.85 37.16 0.37 -1.52 16 2 C -0.12 -1.54 5.66 -26.73 -0.15 -1.69 16 3 C 0.08 1.24 3.41 -25.70 -0.09 1.16 16 4 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 5 C -0.16 -2.40 6.57 -24.48 -0.16 -2.56 16 6 C -0.13 -2.37 4.37 -24.78 -0.11 -2.48 16 7 C 0.07 1.49 3.09 -27.16 -0.08 1.41 16 8 H 0.10 1.91 7.19 -51.93 -0.37 1.54 16 9 C 0.51 11.21 6.95 -10.99 -0.08 11.13 16 10 O -0.54 -13.29 16.10 -14.10 -0.23 -13.51 16 11 N -0.59 -12.47 2.44 -176.43 -0.43 -12.90 16 12 C 0.24 5.27 4.70 -5.20 -0.02 5.24 16 13 C -0.53 -12.50 6.20 -34.44 -0.21 -12.71 16 14 H 0.06 1.55 7.27 -52.48 -0.38 1.17 16 15 C 0.07 1.61 5.40 -17.82 -0.10 1.51 16 16 N -0.89 -22.86 13.29 55.43 0.74 -22.13 16 17 Si 0.89 19.25 29.54 -169.99 -5.02 14.23 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 C 0.17 3.22 5.71 -5.19 -0.03 3.19 16 22 C 0.12 2.17 6.36 -82.58 -0.53 1.65 16 23 C -0.16 -2.43 9.72 -39.44 -0.38 -2.82 16 24 C -0.08 -1.07 10.18 -39.28 -0.40 -1.47 16 25 C -0.18 -2.33 10.11 -39.44 -0.40 -2.73 16 26 C 0.09 1.39 11.18 -17.55 -0.20 1.20 16 27 N -0.46 -8.61 10.27 -9.47 -0.10 -8.71 16 28 O -0.35 -7.00 10.02 -54.89 -0.55 -7.55 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.91 7.99 -51.93 -0.42 0.50 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.08 8.05 -51.93 -0.42 0.66 16 36 H 0.11 2.33 6.35 -51.93 -0.33 2.00 16 37 H 0.08 1.63 6.97 -51.93 -0.36 1.26 16 38 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 39 H 0.04 0.85 5.97 -51.93 -0.31 0.54 16 40 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 41 H 0.09 1.65 7.97 -51.93 -0.41 1.23 16 42 H 0.09 1.78 7.42 -51.93 -0.39 1.39 16 43 H 0.14 2.00 8.06 -52.49 -0.42 1.57 16 44 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 45 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 46 H 0.15 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 375.12 15.07 5.65 5.65 Total: -1.00 -29.67 375.12 -9.68 -39.35 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.17 Total: 7.07 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.57 Total: -1.50 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.21 Total: -43.74 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.78 Total: -21.06 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.67 -9.68 -39.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268081326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.806 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds