Wall clock time and date at job start Tue Mar 31 2020 13:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46905 * 2 1 4 4 H 1.08996 * 110.35365 * 307.14615 * 3 2 1 5 5 C 1.54944 * 110.30859 * 185.00100 * 3 2 1 6 6 C 1.55304 * 100.97800 * 204.65983 * 5 3 2 7 7 C 1.54384 * 102.25492 * 34.11596 * 6 5 3 8 8 H 1.08998 * 109.82952 * 98.24246 * 7 6 5 9 9 C 1.50696 * 109.83063 * 219.12939 * 7 6 5 10 10 O 1.21280 * 120.00554 * 114.99208 * 9 7 6 11 11 N 1.34781 * 119.99744 * 294.99886 * 9 7 6 12 12 C 1.46496 * 120.00001 * 359.97438 * 11 9 7 13 13 C 1.50697 * 109.47152 * 90.00392 * 12 11 9 14 14 H 1.08007 * 119.99600 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00125 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00137 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99703 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47464 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47026 * 120.00455 * 17 15 13 20 20 H 1.48510 * 109.46884 * 240.00235 * 17 15 13 21 21 C 1.46500 * 119.99791 * 180.02562 * 11 9 7 22 22 C 1.50707 * 109.47394 * 89.99821 * 21 11 9 23 23 C 1.38227 * 119.61801 * 94.72503 * 22 21 11 24 24 C 1.38631 * 119.15621 * 179.75894 * 23 22 21 25 25 C 1.38666 * 118.42234 * 0.50392 * 24 23 22 26 26 C 1.38184 * 119.16742 * 359.73963 * 25 24 23 27 27 N 1.31858 * 119.61473 * 275.00052 * 22 21 11 28 28 O 1.43240 * 107.58460 * 338.63785 * 7 6 5 29 29 H 1.08997 * 109.47077 * 60.00005 * 1 2 3 30 30 H 1.09002 * 109.46676 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47025 * 299.99557 * 1 2 3 32 32 H 1.08995 * 109.47025 * 240.00443 * 2 1 3 33 33 H 1.08997 * 109.47077 * 119.99995 * 2 1 3 34 34 H 1.09002 * 111.12633 * 86.72113 * 5 3 2 35 35 H 1.08995 * 111.12590 * 322.60114 * 5 3 2 36 36 H 1.09006 * 110.84773 * 152.30089 * 6 5 3 37 37 H 1.08993 * 110.84888 * 275.71592 * 6 5 3 38 38 H 1.09002 * 109.46936 * 210.00042 * 12 11 9 39 39 H 1.09004 * 109.47210 * 330.00388 * 12 11 9 40 40 H 0.97001 * 119.99778 * 179.97438 * 16 15 13 41 41 H 1.09001 * 109.47163 * 209.99808 * 21 11 9 42 42 H 1.08997 * 109.47408 * 329.99759 * 21 11 9 43 43 H 1.07995 * 120.41686 * 359.97438 * 23 22 21 44 44 H 1.08001 * 120.78442 * 180.26585 * 24 23 22 45 45 H 1.08004 * 120.41861 * 179.75606 * 25 24 23 46 46 H 1.07997 * 119.62083 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5846 2.0057 -0.8146 5 6 3.5841 1.4671 -0.1267 6 6 3.9125 2.8381 0.5248 7 6 2.8331 2.9460 1.6232 8 1 3.2505 2.6416 2.5830 9 6 2.3324 4.3646 1.7105 10 8 1.1805 4.6196 1.4294 11 7 3.1648 5.3502 2.1008 12 6 4.5561 5.0422 2.4408 13 6 5.4115 5.1527 1.2050 14 1 4.9635 5.4256 0.2609 15 6 6.7660 4.9066 1.2799 16 7 7.3115 4.5748 2.4296 17 14 7.8263 5.0443 -0.2518 18 1 6.9781 5.4297 -1.4081 19 1 8.8715 6.0776 -0.0391 20 1 8.4727 3.7356 -0.5258 21 6 2.6779 6.7293 2.1862 22 6 2.1336 6.9853 3.5680 23 6 2.9483 7.5546 4.5286 24 6 2.4362 7.7905 5.7950 25 6 1.1211 7.4337 6.0521 26 6 0.3683 6.8639 5.0431 27 7 0.8872 6.6586 3.8481 28 8 1.7574 2.0726 1.2602 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8929 1.4447 -1.1718 35 1 4.0371 0.6482 0.4319 36 1 4.9111 2.8307 0.9617 37 1 3.8143 3.6457 -0.2006 38 1 4.9110 5.7472 3.1926 39 1 4.6177 4.0281 2.8358 40 1 8.2644 4.4012 2.4822 41 1 3.4991 7.4176 1.9859 42 1 1.8883 6.8820 1.4505 43 1 3.9698 7.8154 4.2943 44 1 3.0482 8.2379 6.5642 45 1 0.6905 7.5993 7.0287 46 1 -0.6566 6.5829 5.2355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268081326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:43 Heat of formation + Delta-G solvation = -67.881237 kcal Electronic energy + Delta-G solvation = -27722.938540 eV Core-core repulsion = 23997.649358 eV Total energy + Delta-G solvation = -3725.289182 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61064 -40.92580 -39.41857 -36.87706 -34.80162 -34.47463 -33.44395 -33.18095 -32.48766 -29.92273 -29.25694 -27.50287 -25.12482 -24.79322 -24.25364 -23.05833 -22.61538 -21.84014 -20.08286 -18.72574 -18.37640 -17.65976 -17.54543 -17.14975 -16.93782 -16.79612 -16.44128 -16.28397 -15.40908 -15.09293 -14.82852 -14.57438 -14.30865 -14.23377 -14.16111 -14.09866 -13.89666 -13.76929 -13.35509 -13.09767 -12.87422 -12.74190 -12.61812 -12.58622 -12.55008 -12.33520 -12.10058 -11.86496 -11.76408 -11.56257 -11.39895 -11.08841 -10.79859 -10.58264 -10.35920 -10.23409 -9.88543 -9.47831 -8.15078 -6.25560 0.13567 0.41119 1.43059 1.48927 1.57181 1.73819 2.12190 2.45562 2.85288 3.06560 3.15804 3.40363 3.55975 3.72378 3.80844 3.87029 4.02744 4.04771 4.17500 4.20317 4.26385 4.27341 4.39235 4.49262 4.52444 4.59936 4.61618 4.78265 4.84901 4.87366 4.89524 4.94818 5.02506 5.07549 5.18182 5.20392 5.24032 5.28406 5.29535 5.35535 5.44851 5.68123 5.81117 5.83325 6.05151 6.08981 6.55410 6.84187 7.15119 7.32982 7.45585 8.91015 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008109 B = 0.006109 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3452.074084 B = 4582.340740 C = 7505.831556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.069 3.931 4 H 0.058 0.942 5 C -0.145 4.145 6 C -0.120 4.120 7 C 0.077 3.923 8 H 0.093 0.907 9 C 0.499 3.501 10 O -0.570 6.570 11 N -0.589 5.589 12 C 0.253 3.747 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.031 3.969 16 N -0.917 5.917 17 Si 0.945 3.055 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.278 1.278 21 C 0.168 3.832 22 C 0.093 3.907 23 C -0.164 4.164 24 C -0.077 4.077 25 C -0.165 4.165 26 C 0.076 3.924 27 N -0.503 5.503 28 O -0.375 6.375 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.025 0.975 39 H 0.024 0.976 40 H 0.267 0.733 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.141 0.859 44 H 0.168 0.832 45 H 0.171 0.829 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.203 -1.582 2.382 6.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C 0.012 3.988 4 H 0.076 0.924 5 C -0.182 4.182 6 C -0.157 4.157 7 C 0.016 3.984 8 H 0.111 0.889 9 C 0.287 3.713 10 O -0.450 6.450 11 N -0.322 5.322 12 C 0.132 3.868 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.169 4.169 16 N -0.557 5.557 17 Si 0.771 3.229 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.203 1.203 21 C 0.045 3.955 22 C -0.045 4.045 23 C -0.185 4.185 24 C -0.103 4.103 25 C -0.184 4.184 26 C -0.082 4.082 27 N -0.213 5.213 28 O -0.294 6.294 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.076 0.924 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.159 0.841 44 H 0.185 0.815 45 H 0.189 0.811 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.322 -1.917 1.763 7.772 hybrid contribution 1.414 0.793 -0.020 1.621 sum -5.909 -1.124 1.743 6.262 Atomic orbital electron populations 1.21709 0.95486 1.02097 1.01262 1.21657 0.96629 0.92979 1.03743 1.23304 0.95235 0.94785 0.85471 0.92441 1.23403 0.94603 0.97056 1.03162 1.23041 0.98892 0.97707 0.96108 1.22438 0.87969 0.87106 1.00879 0.88942 1.21264 0.85213 0.88405 0.76433 1.90602 1.19127 1.84334 1.50917 1.48126 1.12550 1.06265 1.65226 1.19199 0.75388 0.96305 0.95872 1.21528 0.92649 1.47166 0.95115 0.92598 1.25442 0.98588 0.94706 0.98185 1.70010 1.12646 1.47284 1.25716 0.85698 0.78916 0.77849 0.80419 1.19520 1.20968 1.20319 1.20141 0.99078 0.84100 0.92231 1.21669 0.90121 0.95435 0.97285 1.22216 1.01249 1.00327 0.94672 1.21992 0.95883 0.96130 0.96281 1.22517 0.94979 0.99293 1.01626 1.23256 1.01238 0.95472 0.88210 1.67544 1.14018 1.16325 1.23392 1.88443 1.42981 1.58784 1.39145 0.92852 0.90798 0.94507 0.88106 0.91151 0.87987 0.88999 0.88400 0.91774 0.95679 0.95793 0.92418 0.87784 0.91076 0.84102 0.81500 0.81110 0.81281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.85 71.98 0.71 -2.85 16 2 C -0.11 -2.70 5.66 30.60 0.17 -2.53 16 3 C 0.07 2.17 3.41 31.26 0.11 2.27 16 4 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 5 C -0.14 -4.22 6.57 32.05 0.21 -4.01 16 6 C -0.12 -4.52 4.37 31.86 0.14 -4.38 16 7 C 0.08 3.19 3.09 30.32 0.09 3.28 16 8 H 0.09 3.84 7.19 -2.39 -0.02 3.83 16 9 C 0.50 23.16 6.95 87.65 0.61 23.77 16 10 O -0.57 -29.64 16.10 15.76 0.25 -29.39 16 11 N -0.59 -25.97 2.44 -830.50 -2.03 -28.00 16 12 C 0.25 11.66 4.70 85.63 0.40 12.06 16 13 C -0.53 -25.18 6.20 25.60 0.16 -25.02 16 14 H 0.06 2.75 7.27 -2.91 -0.02 2.73 16 15 C 0.03 1.53 5.40 84.66 0.46 1.98 16 16 N -0.92 -47.25 13.29 21.45 0.28 -46.97 16 17 Si 0.94 39.23 29.54 68.60 2.03 41.26 16 18 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 19 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 21 C 0.17 6.76 5.71 85.64 0.49 7.25 16 22 C 0.09 3.46 6.36 42.55 0.27 3.74 16 23 C -0.16 -5.05 9.72 22.36 0.22 -4.84 16 24 C -0.08 -1.84 10.18 22.47 0.23 -1.61 16 25 C -0.16 -3.72 10.11 22.36 0.23 -3.50 16 26 C 0.08 2.21 11.18 84.67 0.95 3.16 16 27 N -0.50 -19.36 10.27 -183.88 -1.89 -21.25 16 28 O -0.37 -15.09 10.02 -130.19 -1.30 -16.39 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.06 7.99 -2.39 -0.02 1.04 16 32 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.09 2.41 8.05 -2.39 -0.02 2.39 16 36 H 0.10 4.04 6.35 -2.38 -0.02 4.02 16 37 H 0.06 2.62 6.97 -2.39 -0.02 2.60 16 38 H 0.03 1.21 8.07 -2.39 -0.02 1.19 16 39 H 0.02 1.17 5.97 -2.38 -0.01 1.16 16 40 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 41 H 0.10 3.82 7.97 -2.39 -0.02 3.80 16 42 H 0.07 3.05 7.42 -2.39 -0.02 3.04 16 43 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 44 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 45 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 46 H 0.17 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -66.10 375.12 3.75 -62.35 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.96 Total: 29.61 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 5.44 Total: 8.78 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -3.63 Total: -96.22 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -1.05 Total: -45.78 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -66.10 3.75 -62.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268081326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.527 kcal (2) G-P(sol) polarization free energy of solvation -66.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds