Wall clock time and date at job start Tue Mar 31 2020 13:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46627 * 2 1 4 4 H 1.08998 * 110.35817 * 52.86128 * 3 2 1 5 5 C 1.54950 * 110.30764 * 175.00105 * 3 2 1 6 6 C 1.55302 * 100.94499 * 155.35953 * 5 3 2 7 7 C 1.54388 * 102.24889 * 325.86695 * 6 5 3 8 8 H 1.08997 * 109.82983 * 261.83742 * 7 6 5 9 9 C 1.50708 * 109.90209 * 140.91431 * 7 6 5 10 10 O 1.21281 * 119.99464 * 251.13242 * 9 7 6 11 11 N 1.34766 * 120.00243 * 71.12983 * 9 7 6 12 12 C 1.46502 * 119.99994 * 4.56912 * 11 9 7 13 13 C 1.50697 * 109.47201 * 84.83806 * 12 11 9 14 14 H 1.07998 * 120.00205 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00128 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00014 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00082 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47340 * 89.99930 * 17 15 13 19 19 H 1.48499 * 109.47164 * 210.00254 * 17 15 13 20 20 H 1.48504 * 109.47351 * 330.00137 * 17 15 13 21 21 C 1.46508 * 120.00078 * 184.56599 * 11 9 7 22 22 C 1.50699 * 109.46919 * 90.00129 * 21 11 9 23 23 C 1.38228 * 119.61765 * 95.00289 * 22 21 11 24 24 C 1.38622 * 119.16170 * 179.97438 * 23 22 21 25 25 C 1.38671 * 118.42431 * 359.97438 * 24 23 22 26 26 C 1.38183 * 119.15870 * 0.02562 * 25 24 23 27 27 N 1.31853 * 119.61886 * 274.72599 * 22 21 11 28 28 O 1.43239 * 107.59218 * 21.35802 * 7 6 5 29 29 H 1.09000 * 109.46985 * 299.99898 * 1 2 3 30 30 H 1.08990 * 109.47064 * 59.99827 * 1 2 3 31 31 H 1.09002 * 109.46691 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46985 * 240.00102 * 2 1 3 33 33 H 1.08993 * 109.47036 * 119.99650 * 2 1 3 34 34 H 1.08994 * 111.12541 * 273.28242 * 5 3 2 35 35 H 1.09003 * 111.12270 * 37.43767 * 5 3 2 36 36 H 1.09000 * 110.84806 * 84.05716 * 6 5 3 37 37 H 1.08997 * 110.85109 * 207.68430 * 6 5 3 38 38 H 1.09002 * 109.47318 * 204.83603 * 12 11 9 39 39 H 1.08996 * 109.46994 * 324.83840 * 12 11 9 40 40 H 0.96995 * 119.99816 * 179.97438 * 16 15 13 41 41 H 1.08996 * 109.47072 * 210.00190 * 21 11 9 42 42 H 1.08994 * 109.46996 * 329.99967 * 21 11 9 43 43 H 1.08008 * 120.41853 * 359.94884 * 23 22 21 44 44 H 1.08000 * 120.79009 * 179.97438 * 24 23 22 45 45 H 1.07991 * 120.42579 * 179.97438 * 25 24 23 46 46 H 1.07995 * 119.61963 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5846 2.0057 0.8146 5 6 3.5841 1.4672 0.1266 6 6 3.9115 2.8385 -0.5245 7 6 2.8319 2.9457 -1.6229 8 1 3.2491 2.6405 -2.5825 9 6 2.3297 4.3639 -1.7120 10 8 1.2127 4.6368 -1.3264 11 7 3.1218 5.3286 -2.2199 12 6 4.4318 4.9829 -2.7773 13 6 4.2698 4.5559 -4.2135 14 1 3.2892 4.5438 -4.6659 15 6 5.3735 4.1818 -4.9502 16 7 6.5678 4.1980 -4.3998 17 14 5.1728 3.6533 -6.7306 18 1 5.2933 4.8395 -7.6157 19 1 6.2287 2.6682 -7.0766 20 1 3.8366 3.0319 -6.9149 21 6 2.6729 6.7232 -2.2148 22 6 3.1118 7.3874 -0.9352 23 6 4.2901 8.1096 -0.9097 24 6 4.6846 8.7172 0.2722 25 6 3.8753 8.5755 1.3893 26 6 2.7110 7.8382 1.2880 27 7 2.3646 7.2776 0.1456 28 8 1.7569 2.0714 -1.2601 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.8929 1.4447 1.1716 35 1 4.0372 0.6485 -0.4326 36 1 3.8092 3.6463 0.2002 37 1 4.9101 2.8320 -0.9615 38 1 5.0883 5.8516 -2.7285 39 1 4.8671 4.1656 -2.2023 40 1 7.3442 3.9344 -4.9179 41 1 3.1086 7.2483 -3.0647 42 1 1.5858 6.7552 -2.2864 43 1 4.8961 8.1991 -1.7994 44 1 5.6005 9.2873 0.3218 45 1 4.1518 9.0348 2.3267 46 1 2.0754 7.7227 2.1535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268081331.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:52 Heat of formation + Delta-G solvation = -53.188676 kcal Electronic energy + Delta-G solvation = -27696.486156 eV Core-core repulsion = 23971.834091 eV Total energy + Delta-G solvation = -3724.652065 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.17118 -39.64861 -37.90527 -35.05532 -33.45418 -32.85473 -32.21605 -31.92207 -31.23049 -28.60541 -27.50079 -25.98525 -23.84657 -23.36184 -22.80742 -21.85104 -21.39633 -20.64504 -18.47767 -17.05988 -16.81957 -16.36211 -16.06855 -15.87444 -15.51628 -15.35174 -15.02247 -14.48687 -14.15915 -13.73952 -13.60285 -13.29090 -13.19091 -13.01474 -12.83556 -12.63926 -12.51812 -12.20018 -11.77095 -11.66003 -11.49876 -11.41792 -11.33009 -11.14229 -10.96055 -10.82663 -10.70007 -10.54334 -10.35550 -10.18946 -9.82427 -9.67380 -9.58348 -9.14415 -8.90262 -8.63274 -8.40621 -7.72850 -6.22399 -4.29807 1.27893 1.49920 3.21556 3.29127 3.33068 3.43687 3.65797 4.13434 4.28609 4.43297 4.59350 4.78272 4.86851 4.95731 5.00166 5.10843 5.21267 5.23470 5.27693 5.34913 5.42303 5.44676 5.50898 5.70104 5.76866 5.81269 5.91613 5.93141 6.00000 6.01191 6.02708 6.10428 6.22617 6.24183 6.34018 6.36047 6.39851 6.46907 6.50333 6.70545 6.90384 7.13490 7.37869 7.55959 7.74122 8.02121 8.27366 8.35683 8.77995 9.10763 9.39145 10.83846 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007085 B = 0.006632 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3951.242353 B = 4220.669167 C = 7199.765524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.078 3.922 4 H 0.066 0.934 5 C -0.150 4.150 6 C -0.138 4.138 7 C 0.070 3.930 8 H 0.120 0.880 9 C 0.510 3.490 10 O -0.540 6.540 11 N -0.593 5.593 12 C 0.233 3.767 13 C -0.540 4.540 14 H 0.063 0.937 15 C 0.067 3.933 16 N -0.891 5.891 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.167 3.833 22 C 0.121 3.879 23 C -0.156 4.156 24 C -0.080 4.080 25 C -0.182 4.182 26 C 0.092 3.908 27 N -0.461 5.461 28 O -0.351 6.351 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.036 0.964 39 H 0.041 0.959 40 H 0.265 0.735 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.137 0.863 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.880 0.971 10.881 11.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C 0.021 3.979 4 H 0.084 0.916 5 C -0.188 4.188 6 C -0.176 4.176 7 C 0.009 3.991 8 H 0.138 0.862 9 C 0.298 3.702 10 O -0.417 6.417 11 N -0.326 5.326 12 C 0.113 3.887 13 C -0.578 4.578 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.529 5.529 17 Si 0.722 3.278 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.196 1.196 21 C 0.042 3.958 22 C -0.018 4.018 23 C -0.176 4.176 24 C -0.106 4.106 25 C -0.203 4.203 26 C -0.066 4.066 27 N -0.170 5.170 28 O -0.270 6.270 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.155 0.845 44 H 0.149 0.851 45 H 0.147 0.853 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.244 0.537 10.858 11.345 hybrid contribution 1.305 0.420 -0.808 1.591 sum -1.939 0.957 10.050 10.280 Atomic orbital electron populations 1.21715 0.95430 1.00967 1.02544 1.21638 0.96747 0.94993 1.02280 1.23012 0.93950 0.93515 0.87466 0.91567 1.23313 0.95984 0.97912 1.01583 1.23032 1.00120 0.97291 0.97181 1.22659 0.86887 0.88628 1.00886 0.86232 1.20737 0.85214 0.87187 0.77111 1.90623 1.19547 1.82812 1.48712 1.48091 1.20692 1.04511 1.59302 1.19566 0.78125 0.97267 0.93712 1.21548 0.94160 1.45720 0.96417 0.91889 1.24924 0.94966 0.95111 0.98629 1.69916 0.98424 1.47545 1.37060 0.86530 0.78136 0.78584 0.84511 1.20496 1.21068 1.19610 1.20114 1.01481 0.82666 0.91509 1.21934 0.91010 0.93624 0.95223 1.22117 0.97548 0.98521 0.99449 1.21542 0.98988 0.97440 0.92671 1.22083 0.96886 1.01825 0.99462 1.22761 0.94685 0.93425 0.95696 1.67653 1.32669 1.17828 0.98822 1.88473 1.42804 1.58708 1.36974 0.93017 0.91768 0.93177 0.91157 0.91163 0.90259 0.90046 0.91055 0.88395 0.94622 0.94100 0.92516 0.88788 0.89081 0.84471 0.85131 0.85349 0.83332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.85 37.16 0.37 -1.50 16 2 C -0.12 -1.51 5.66 -26.73 -0.15 -1.66 16 3 C 0.08 1.22 3.41 -25.70 -0.09 1.13 16 4 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 5 C -0.15 -2.10 6.57 -24.48 -0.16 -2.26 16 6 C -0.14 -2.36 5.58 -24.78 -0.14 -2.50 16 7 C 0.07 1.42 3.07 -27.15 -0.08 1.33 16 8 H 0.12 2.59 7.13 -51.93 -0.37 2.22 16 9 C 0.51 11.42 6.83 -10.99 -0.08 11.35 16 10 O -0.54 -13.41 16.10 -13.94 -0.22 -13.63 16 11 N -0.59 -12.65 2.45 -176.43 -0.43 -13.08 16 12 C 0.23 5.32 4.82 -5.19 -0.03 5.30 16 13 C -0.54 -13.64 8.73 -34.44 -0.30 -13.94 16 14 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 15 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -23.58 13.29 55.43 0.74 -22.84 16 17 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 21 C 0.17 3.20 5.73 -5.19 -0.03 3.17 16 22 C 0.12 2.15 6.36 -82.59 -0.53 1.62 16 23 C -0.16 -2.36 9.72 -39.44 -0.38 -2.75 16 24 C -0.08 -1.02 10.18 -39.28 -0.40 -1.42 16 25 C -0.18 -2.22 10.11 -39.44 -0.40 -2.62 16 26 C 0.09 1.33 11.18 -17.55 -0.20 1.13 16 27 N -0.46 -8.36 10.27 -9.47 -0.10 -8.46 16 28 O -0.35 -6.97 10.03 -54.73 -0.55 -7.52 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.93 7.99 -51.93 -0.42 0.52 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.07 8.06 -51.93 -0.42 0.65 16 36 H 0.07 1.26 7.85 -51.93 -0.41 0.85 16 37 H 0.10 1.69 6.79 -51.93 -0.35 1.34 16 38 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 39 H 0.04 0.95 4.80 -51.93 -0.25 0.70 16 40 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 41 H 0.09 1.65 7.97 -51.93 -0.41 1.24 16 42 H 0.09 1.84 7.36 -51.93 -0.38 1.46 16 43 H 0.14 1.96 8.06 -52.48 -0.42 1.53 16 44 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 46 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 379.44 15.07 5.72 5.72 Total: -1.00 -30.86 379.44 -9.76 -40.62 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.20 Total: 6.05 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.69 Total: -2.02 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.21 Total: -44.38 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.77 Total: -21.16 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.86 -9.76 -40.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268081331.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.571 kcal (2) G-P(sol) polarization free energy of solvation -30.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds