Wall clock time and date at job start Tue Mar 31 2020 13:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46627 * 2 1 4 4 H 1.08998 * 110.35817 * 52.86128 * 3 2 1 5 5 C 1.54950 * 110.30764 * 175.00105 * 3 2 1 6 6 C 1.55302 * 100.94499 * 155.35953 * 5 3 2 7 7 C 1.54388 * 102.24889 * 325.86695 * 6 5 3 8 8 H 1.08997 * 109.82983 * 261.83742 * 7 6 5 9 9 C 1.50708 * 109.90209 * 140.91431 * 7 6 5 10 10 O 1.21281 * 119.99464 * 251.13242 * 9 7 6 11 11 N 1.34766 * 120.00243 * 71.12983 * 9 7 6 12 12 C 1.46502 * 119.99994 * 4.56912 * 11 9 7 13 13 C 1.50697 * 109.47201 * 84.83806 * 12 11 9 14 14 H 1.07998 * 120.00205 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00128 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00014 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00082 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47340 * 89.99930 * 17 15 13 19 19 H 1.48499 * 109.47164 * 210.00254 * 17 15 13 20 20 H 1.48504 * 109.47351 * 330.00137 * 17 15 13 21 21 C 1.46508 * 120.00078 * 184.56599 * 11 9 7 22 22 C 1.50699 * 109.46919 * 90.00129 * 21 11 9 23 23 C 1.38228 * 119.61765 * 95.00289 * 22 21 11 24 24 C 1.38622 * 119.16170 * 179.97438 * 23 22 21 25 25 C 1.38671 * 118.42431 * 359.97438 * 24 23 22 26 26 C 1.38183 * 119.15870 * 0.02562 * 25 24 23 27 27 N 1.31853 * 119.61886 * 274.72599 * 22 21 11 28 28 O 1.43239 * 107.59218 * 21.35802 * 7 6 5 29 29 H 1.09000 * 109.46985 * 299.99898 * 1 2 3 30 30 H 1.08990 * 109.47064 * 59.99827 * 1 2 3 31 31 H 1.09002 * 109.46691 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46985 * 240.00102 * 2 1 3 33 33 H 1.08993 * 109.47036 * 119.99650 * 2 1 3 34 34 H 1.08994 * 111.12541 * 273.28242 * 5 3 2 35 35 H 1.09003 * 111.12270 * 37.43767 * 5 3 2 36 36 H 1.09000 * 110.84806 * 84.05716 * 6 5 3 37 37 H 1.08997 * 110.85109 * 207.68430 * 6 5 3 38 38 H 1.09002 * 109.47318 * 204.83603 * 12 11 9 39 39 H 1.08996 * 109.46994 * 324.83840 * 12 11 9 40 40 H 0.96995 * 119.99816 * 179.97438 * 16 15 13 41 41 H 1.08996 * 109.47072 * 210.00190 * 21 11 9 42 42 H 1.08994 * 109.46996 * 329.99967 * 21 11 9 43 43 H 1.08008 * 120.41853 * 359.94884 * 23 22 21 44 44 H 1.08000 * 120.79009 * 179.97438 * 24 23 22 45 45 H 1.07991 * 120.42579 * 179.97438 * 25 24 23 46 46 H 1.07995 * 119.61963 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5846 2.0057 0.8146 5 6 3.5841 1.4672 0.1266 6 6 3.9115 2.8385 -0.5245 7 6 2.8319 2.9457 -1.6229 8 1 3.2491 2.6405 -2.5825 9 6 2.3297 4.3639 -1.7120 10 8 1.2127 4.6368 -1.3264 11 7 3.1218 5.3286 -2.2199 12 6 4.4318 4.9829 -2.7773 13 6 4.2698 4.5559 -4.2135 14 1 3.2892 4.5438 -4.6659 15 6 5.3735 4.1818 -4.9502 16 7 6.5678 4.1980 -4.3998 17 14 5.1728 3.6533 -6.7306 18 1 5.2933 4.8395 -7.6157 19 1 6.2287 2.6682 -7.0766 20 1 3.8366 3.0319 -6.9149 21 6 2.6729 6.7232 -2.2148 22 6 3.1118 7.3874 -0.9352 23 6 4.2901 8.1096 -0.9097 24 6 4.6846 8.7172 0.2722 25 6 3.8753 8.5755 1.3893 26 6 2.7110 7.8382 1.2880 27 7 2.3646 7.2776 0.1456 28 8 1.7569 2.0714 -1.2601 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.8929 1.4447 1.1716 35 1 4.0372 0.6485 -0.4326 36 1 3.8092 3.6463 0.2002 37 1 4.9101 2.8320 -0.9615 38 1 5.0883 5.8516 -2.7285 39 1 4.8671 4.1656 -2.2023 40 1 7.3442 3.9344 -4.9179 41 1 3.1086 7.2483 -3.0647 42 1 1.5858 6.7552 -2.2864 43 1 4.8961 8.1991 -1.7994 44 1 5.6005 9.2873 0.3218 45 1 4.1518 9.0348 2.3267 46 1 2.0754 7.7227 2.1535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268081331.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:51 Heat of formation + Delta-G solvation = -70.067698 kcal Electronic energy + Delta-G solvation = -27697.218085 eV Core-core repulsion = 23971.834091 eV Total energy + Delta-G solvation = -3725.383994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62204 -40.93799 -39.45708 -36.84329 -34.78386 -34.52114 -33.48658 -33.24820 -32.56740 -29.93329 -29.30819 -27.44645 -25.36614 -24.69609 -24.24376 -23.06605 -22.75372 -21.86188 -20.12363 -18.78656 -18.40836 -17.64664 -17.62200 -17.25660 -16.90729 -16.64150 -16.43303 -16.31685 -15.70457 -14.99299 -14.91375 -14.54146 -14.43344 -14.25413 -14.19304 -13.97030 -13.94574 -13.85880 -13.39117 -13.21088 -12.88622 -12.82114 -12.68977 -12.64335 -12.52390 -12.39449 -12.10329 -11.97182 -11.76103 -11.75268 -11.47499 -11.11879 -10.80096 -10.60009 -10.36801 -10.25242 -9.89576 -9.49067 -8.20740 -6.34301 0.13358 0.40980 1.40878 1.44113 1.52851 1.70544 2.13110 2.41620 2.87647 3.03040 3.09683 3.38719 3.46529 3.60245 3.72237 3.87007 4.02231 4.04118 4.13852 4.18659 4.24684 4.26565 4.35436 4.46301 4.51142 4.57990 4.61031 4.71540 4.77669 4.83483 4.86003 4.88859 4.90875 4.99539 5.06329 5.10684 5.21640 5.24210 5.28452 5.30229 5.43405 5.64557 5.80165 5.82298 6.02843 6.07088 6.51873 6.79681 7.14324 7.30224 7.41494 8.84404 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007085 B = 0.006632 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3951.242353 B = 4220.669167 C = 7199.765524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.067 3.933 4 H 0.059 0.941 5 C -0.136 4.136 6 C -0.131 4.131 7 C 0.072 3.928 8 H 0.100 0.900 9 C 0.503 3.497 10 O -0.573 6.573 11 N -0.590 5.590 12 C 0.249 3.751 13 C -0.551 4.551 14 H 0.046 0.954 15 C 0.031 3.969 16 N -0.912 5.912 17 Si 0.949 3.051 18 H -0.273 1.273 19 H -0.277 1.277 20 H -0.277 1.277 21 C 0.165 3.835 22 C 0.095 3.905 23 C -0.164 4.164 24 C -0.076 4.076 25 C -0.163 4.163 26 C 0.077 3.923 27 N -0.503 5.503 28 O -0.377 6.377 29 H 0.054 0.946 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.029 0.971 39 H 0.039 0.961 40 H 0.269 0.731 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.140 0.860 44 H 0.167 0.833 45 H 0.172 0.828 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.339 0.744 12.646 12.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C 0.010 3.990 4 H 0.077 0.923 5 C -0.173 4.173 6 C -0.169 4.169 7 C 0.011 3.989 8 H 0.117 0.883 9 C 0.291 3.709 10 O -0.453 6.453 11 N -0.322 5.322 12 C 0.129 3.871 13 C -0.589 4.589 14 H 0.064 0.936 15 C -0.170 4.170 16 N -0.551 5.551 17 Si 0.775 3.225 18 H -0.199 1.199 19 H -0.202 1.202 20 H -0.202 1.202 21 C 0.041 3.959 22 C -0.043 4.043 23 C -0.184 4.184 24 C -0.101 4.101 25 C -0.183 4.183 26 C -0.080 4.080 27 N -0.213 5.213 28 O -0.295 6.295 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.113 0.887 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.119 0.881 42 H 0.088 0.912 43 H 0.158 0.842 44 H 0.185 0.815 45 H 0.189 0.811 46 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.691 0.322 12.619 12.735 hybrid contribution 0.789 0.562 -1.277 1.602 sum -0.902 0.885 11.342 11.412 Atomic orbital electron populations 1.21713 0.95608 1.02094 1.01226 1.21668 0.96601 0.93010 1.03809 1.23330 0.95359 0.94844 0.85481 0.92345 1.23327 0.94561 0.96038 1.03369 1.22952 0.98689 0.99194 0.96104 1.22542 0.87919 0.87301 1.01159 0.88281 1.21212 0.84839 0.88235 0.76572 1.90585 1.20810 1.83525 1.50383 1.48091 1.20027 1.05510 1.58582 1.19276 0.78542 0.96627 0.92636 1.21651 0.93533 1.46138 0.97615 0.93564 1.25501 0.94692 0.95020 1.01783 1.69975 0.98864 1.47967 1.38264 0.85684 0.77757 0.78391 0.80646 1.19901 1.20245 1.20246 1.20147 1.00235 0.81884 0.93594 1.21566 0.92598 0.95591 0.94498 1.22199 0.96681 0.98617 1.00938 1.21985 1.00072 0.96524 0.91555 1.22517 0.95122 0.99763 1.00885 1.23256 0.96168 0.93453 0.95127 1.67529 1.34074 1.19621 1.00104 1.88456 1.43119 1.58800 1.39165 0.92725 0.94718 0.90809 0.91311 0.87755 0.87085 0.88680 0.91892 0.88698 0.95312 0.94363 0.92177 0.88078 0.91166 0.84233 0.81505 0.81068 0.81168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.85 71.99 0.71 -2.89 16 2 C -0.11 -2.68 5.66 30.60 0.17 -2.50 16 3 C 0.07 2.04 3.41 31.26 0.11 2.14 16 4 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 5 C -0.14 -3.55 6.57 32.05 0.21 -3.34 16 6 C -0.13 -4.52 5.58 31.86 0.18 -4.34 16 7 C 0.07 3.02 3.07 30.32 0.09 3.11 16 8 H 0.10 4.53 7.13 -2.39 -0.02 4.51 16 9 C 0.50 23.76 6.83 87.66 0.60 24.36 16 10 O -0.57 -30.17 16.10 15.61 0.25 -29.92 16 11 N -0.59 -26.51 2.45 -830.51 -2.04 -28.55 16 12 C 0.25 11.79 4.82 85.63 0.41 12.20 16 13 C -0.55 -28.61 8.73 25.60 0.22 -28.39 16 14 H 0.05 2.52 7.81 -2.91 -0.02 2.49 16 15 C 0.03 1.61 5.46 84.65 0.46 2.07 16 16 N -0.91 -48.19 13.29 21.45 0.28 -47.91 16 17 Si 0.95 41.56 29.54 68.60 2.03 43.59 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 C 0.17 6.73 5.73 85.63 0.49 7.22 16 22 C 0.10 3.48 6.36 42.55 0.27 3.75 16 23 C -0.16 -4.89 9.72 22.36 0.22 -4.68 16 24 C -0.08 -1.71 10.18 22.47 0.23 -1.48 16 25 C -0.16 -3.44 10.11 22.36 0.23 -3.22 16 26 C 0.08 2.13 11.18 84.67 0.95 3.08 16 27 N -0.50 -18.63 10.27 -183.89 -1.89 -20.52 16 28 O -0.38 -15.45 10.03 -130.34 -1.31 -16.75 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.03 1.02 7.99 -2.39 -0.02 1.00 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.09 2.26 8.06 -2.39 -0.02 2.24 16 36 H 0.06 2.25 7.85 -2.39 -0.02 2.23 16 37 H 0.09 3.29 6.79 -2.39 -0.02 3.28 16 38 H 0.03 1.40 8.03 -2.39 -0.02 1.38 16 39 H 0.04 1.84 4.80 -2.39 -0.01 1.82 16 40 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 41 H 0.10 3.80 7.97 -2.39 -0.02 3.79 16 42 H 0.07 3.09 7.36 -2.39 -0.02 3.07 16 43 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 44 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 45 H 0.17 2.15 8.06 -2.92 -0.02 2.12 16 46 H 0.17 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -69.57 379.44 3.84 -65.73 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.96 Total: 27.23 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 5.55 Total: 7.10 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -3.64 Total: -96.97 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -1.06 Total: -46.68 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -69.57 3.84 -65.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268081331.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.336 kcal (2) G-P(sol) polarization free energy of solvation -69.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds