Wall clock time and date at job start Tue Mar 31 2020 13:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47428 * 2 1 4 4 H 1.09000 * 110.32879 * 52.75410 * 3 2 1 5 5 C 1.54472 * 110.37199 * 175.00291 * 3 2 1 6 6 C 1.54513 * 104.06262 * 142.92293 * 5 3 2 7 7 C 1.54481 * 104.06060 * 0.02562 * 6 5 3 8 8 H 1.08999 * 110.37512 * 94.96630 * 7 6 5 9 9 C 1.50706 * 110.36839 * 217.18796 * 7 6 5 10 10 O 1.21283 * 119.99699 * 106.23357 * 9 7 6 11 11 N 1.34778 * 120.00128 * 286.22964 * 9 7 6 12 12 C 1.46501 * 119.99788 * 4.71203 * 11 9 7 13 13 C 1.50701 * 109.47025 * 271.11289 * 12 11 9 14 14 H 1.08000 * 119.99953 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99756 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00056 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99703 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47022 * 90.00411 * 17 15 13 19 19 H 1.48498 * 109.47077 * 209.99887 * 17 15 13 20 20 H 1.48500 * 109.47255 * 330.00267 * 17 15 13 21 21 C 1.46499 * 119.99733 * 184.71014 * 11 9 7 22 22 C 1.50703 * 109.47046 * 270.00024 * 21 11 9 23 23 C 1.38668 * 120.41781 * 270.02611 * 22 21 11 24 24 C 1.38636 * 118.42024 * 179.70948 * 23 22 21 25 25 C 1.38231 * 119.15671 * 0.50956 * 24 23 22 26 26 N 1.31847 * 120.76381 * 359.47898 * 25 24 23 27 27 C 1.31892 * 121.72709 * 0.27196 * 26 25 24 28 28 O 1.44422 * 104.80382 * 336.01767 * 7 6 5 29 29 H 1.09007 * 109.46883 * 299.99758 * 1 2 3 30 30 H 1.09001 * 109.47514 * 59.99222 * 1 2 3 31 31 H 1.08996 * 109.47577 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.46697 * 240.00742 * 2 1 3 33 33 H 1.08991 * 109.47561 * 120.00705 * 2 1 3 34 34 H 1.08997 * 110.51186 * 24.27784 * 5 3 2 35 35 H 1.08994 * 110.62836 * 261.62349 * 5 3 2 36 36 H 1.08994 * 110.50930 * 241.35481 * 6 5 3 37 37 H 1.08997 * 110.62968 * 118.70053 * 6 5 3 38 38 H 1.09004 * 109.47085 * 31.11753 * 12 11 9 39 39 H 1.08998 * 109.46697 * 151.11155 * 12 11 9 40 40 H 0.97003 * 120.00435 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.46481 * 150.00579 * 21 11 9 42 42 H 1.08996 * 109.47098 * 30.00457 * 21 11 9 43 43 H 1.07998 * 120.79440 * 359.95169 * 23 22 21 44 44 H 1.07994 * 120.41798 * 180.28284 * 24 23 22 45 45 H 1.08000 * 119.61612 * 179.74972 * 25 24 23 46 46 H 1.07998 * 119.61467 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5831 2.0057 0.8136 5 6 3.5794 1.4685 0.1261 6 6 4.0105 2.6437 -0.7797 7 6 2.6805 3.1891 -1.3453 8 1 2.3232 4.0214 -0.7391 9 6 2.8583 3.6230 -2.7776 10 8 2.3998 2.9500 -3.6764 11 7 3.5267 4.7588 -3.0596 12 6 4.1689 5.5173 -1.9832 13 6 3.1870 6.5069 -1.4110 14 1 2.1846 6.5647 -1.8089 15 6 3.5682 7.3384 -0.3793 16 7 4.7889 7.2682 0.1049 17 14 2.3508 8.5645 0.3305 18 1 1.6047 7.9312 1.4475 19 1 3.0832 9.7534 0.8358 20 1 1.3965 8.9836 -0.7273 21 6 3.6111 5.2349 -4.4425 22 6 4.8336 4.6499 -5.1015 23 6 6.0483 5.3164 -5.0453 24 6 7.1476 4.7376 -5.6606 25 6 6.9948 3.5291 -6.3142 26 7 5.8241 2.9236 -6.3474 27 6 4.7583 3.4423 -5.7689 28 8 1.7626 2.0768 -1.2672 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 4.0079 0.5327 -0.2326 35 1 3.8771 1.6528 1.1583 36 1 4.6521 2.2888 -1.5861 37 1 4.5203 3.4108 -0.1968 38 1 4.4932 4.8324 -1.1996 39 1 5.0328 6.0505 -2.3800 40 1 5.0573 7.8534 0.8305 41 1 3.6805 6.3227 -4.4486 42 1 2.7203 4.9246 -4.9886 43 1 6.1369 6.2619 -4.5311 44 1 8.1101 5.2264 -5.6328 45 1 7.8453 3.0736 -6.7995 46 1 3.8159 2.9172 -5.8175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268095739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:57 Heat of formation + Delta-G solvation = -55.376355 kcal Electronic energy + Delta-G solvation = -27616.406550 eV Core-core repulsion = 23891.659620 eV Total energy + Delta-G solvation = -3724.746930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.20279 -39.64012 -38.10273 -35.27384 -33.54614 -33.04099 -32.21460 -31.76621 -31.23959 -28.56459 -27.51376 -25.92888 -23.97588 -23.37961 -22.85950 -21.86537 -21.32808 -20.75598 -18.63096 -16.98696 -16.83325 -16.39907 -16.16621 -16.01670 -15.73493 -15.14749 -14.83406 -14.65635 -14.14776 -13.87950 -13.50556 -13.45547 -13.33885 -13.00411 -12.91983 -12.79956 -12.65555 -12.34731 -11.92810 -11.63807 -11.58571 -11.41618 -11.27555 -11.16801 -10.98686 -10.90905 -10.71335 -10.52201 -10.32685 -10.26021 -9.89576 -9.57961 -9.51693 -9.23948 -9.02738 -8.72776 -8.59606 -7.85519 -6.28648 -4.36502 1.31394 1.52541 3.16338 3.20743 3.24537 3.29692 3.55983 4.10241 4.23123 4.47158 4.67918 4.77234 4.88595 5.02709 5.04898 5.15701 5.18539 5.22145 5.24811 5.30762 5.32581 5.40964 5.51606 5.59499 5.66716 5.83370 5.90909 5.95311 5.97179 6.00537 6.04453 6.08542 6.14885 6.25669 6.28220 6.33901 6.36445 6.41150 6.56453 6.63788 6.95588 7.04372 7.17206 7.43562 7.66044 7.93934 8.18012 8.20685 8.69286 8.91932 9.32149 10.77657 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007488 B = 0.006162 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3738.513462 B = 4542.757806 C = 7336.162900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.071 3.929 4 H 0.069 0.931 5 C -0.148 4.148 6 C -0.140 4.140 7 C 0.065 3.935 8 H 0.109 0.891 9 C 0.526 3.474 10 O -0.551 6.551 11 N -0.590 5.590 12 C 0.230 3.770 13 C -0.542 4.542 14 H 0.063 0.937 15 C 0.068 3.932 16 N -0.890 5.890 17 Si 0.895 3.105 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.163 3.837 22 C -0.146 4.146 23 C -0.059 4.059 24 C -0.179 4.179 25 C 0.088 3.912 26 N -0.492 5.492 27 C 0.118 3.882 28 O -0.347 6.347 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.045 0.955 39 H 0.037 0.963 40 H 0.266 0.734 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.137 0.863 44 H 0.131 0.869 45 H 0.149 0.851 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.576 -7.212 -2.201 7.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C 0.013 3.987 4 H 0.087 0.913 5 C -0.186 4.186 6 C -0.178 4.178 7 C 0.004 3.996 8 H 0.127 0.873 9 C 0.313 3.687 10 O -0.430 6.430 11 N -0.322 5.322 12 C 0.110 3.890 13 C -0.581 4.581 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.528 5.528 17 Si 0.722 3.278 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C 0.039 3.961 22 C -0.149 4.149 23 C -0.086 4.086 24 C -0.199 4.199 25 C -0.069 4.069 26 N -0.201 5.201 27 C -0.039 4.039 28 O -0.265 6.265 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.154 0.846 44 H 0.149 0.851 45 H 0.167 0.833 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.220 -8.335 -3.112 8.981 hybrid contribution -0.128 1.845 1.243 2.228 sum 1.092 -6.491 -1.869 6.842 Atomic orbital electron populations 1.21733 0.95428 1.01196 1.02423 1.21558 0.96635 0.94639 1.02395 1.23040 0.94163 0.94137 0.87327 0.91343 1.22974 0.95957 0.99100 1.00530 1.22894 0.97134 0.98129 0.99666 1.22847 0.90240 0.91424 0.95091 0.87321 1.20081 0.77821 0.80693 0.90070 1.90594 1.50310 1.54112 1.48001 1.48132 1.52638 1.23690 1.07692 1.19647 0.93352 0.91478 0.84502 1.21514 0.98908 1.19532 1.18113 0.91908 1.24924 0.95322 0.97077 0.96273 1.69910 1.17364 1.38990 1.26497 0.86534 0.81067 0.80679 0.79487 1.20406 1.21049 1.19705 1.20133 0.94367 0.98968 0.82605 1.21436 0.97184 0.96993 0.99271 1.21630 0.91847 0.99743 0.95342 1.22097 0.99702 0.97751 1.00374 1.22701 0.95233 0.92476 0.96483 1.67717 0.99535 1.34215 1.18602 1.22875 0.97164 0.92106 0.91763 1.89183 1.57260 1.43261 1.36822 0.92944 0.91816 0.93047 0.91112 0.90990 0.90862 0.90443 0.91170 0.88563 0.93683 0.94539 0.92436 0.89059 0.89747 0.84550 0.85114 0.83332 0.82356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.85 37.16 0.37 -1.41 16 2 C -0.11 -1.41 5.56 -26.73 -0.15 -1.56 16 3 C 0.07 1.05 3.24 -25.96 -0.08 0.97 16 4 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 5 C -0.15 -2.06 6.63 -25.16 -0.17 -2.23 16 6 C -0.14 -2.37 5.59 -25.16 -0.14 -2.52 16 7 C 0.06 1.25 2.83 -27.10 -0.08 1.18 16 8 H 0.11 2.23 7.27 -51.93 -0.38 1.86 16 9 C 0.53 11.07 6.91 -10.98 -0.08 11.00 16 10 O -0.55 -12.60 15.48 -13.47 -0.21 -12.81 16 11 N -0.59 -11.88 2.44 -176.43 -0.43 -12.31 16 12 C 0.23 5.07 4.85 -5.19 -0.03 5.04 16 13 C -0.54 -13.21 8.72 -34.44 -0.30 -13.51 16 14 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 15 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -23.05 13.29 55.43 0.74 -22.32 16 17 Si 0.89 19.66 29.54 -169.99 -5.02 14.64 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 C 0.16 2.89 5.52 -5.19 -0.03 2.86 16 22 C -0.15 -2.42 5.48 -104.49 -0.57 -2.99 16 23 C -0.06 -0.89 9.86 -39.28 -0.39 -1.27 16 24 C -0.18 -2.37 10.11 -39.44 -0.40 -2.77 16 25 C 0.09 1.22 11.18 -17.55 -0.20 1.03 16 26 N -0.49 -8.19 10.36 -13.25 -0.14 -8.33 16 27 C 0.12 2.03 10.76 -17.55 -0.19 1.84 16 28 O -0.35 -6.60 10.41 -54.26 -0.57 -7.17 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.87 8.01 -51.93 -0.42 0.45 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.23 7.87 -51.93 -0.41 0.82 16 37 H 0.10 1.68 6.60 -51.93 -0.34 1.33 16 38 H 0.05 1.02 4.56 -51.93 -0.24 0.78 16 39 H 0.04 0.84 8.06 -51.93 -0.42 0.42 16 40 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 41 H 0.09 1.54 8.03 -51.93 -0.42 1.12 16 42 H 0.08 1.48 7.44 -51.93 -0.39 1.10 16 43 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 44 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 46 H 0.16 2.83 7.42 -52.49 -0.39 2.44 16 LS Contribution 377.68 15.07 5.69 5.69 Total: -1.00 -28.90 377.68 -9.61 -38.51 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -7.15 Total: 6.85 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.52 Total: -2.77 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.17 Total: -42.95 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.77 Total: -19.98 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.90 -9.61 -38.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268095739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.864 kcal (2) G-P(sol) polarization free energy of solvation -28.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds