Wall clock time and date at job start Tue Mar 31 2020 13:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47428 * 2 1 4 4 H 1.09000 * 110.32879 * 52.75410 * 3 2 1 5 5 C 1.54472 * 110.37199 * 175.00291 * 3 2 1 6 6 C 1.54513 * 104.06262 * 142.92293 * 5 3 2 7 7 C 1.54481 * 104.06060 * 0.02562 * 6 5 3 8 8 H 1.08999 * 110.37512 * 94.96630 * 7 6 5 9 9 C 1.50706 * 110.36839 * 217.18796 * 7 6 5 10 10 O 1.21283 * 119.99699 * 106.23357 * 9 7 6 11 11 N 1.34778 * 120.00128 * 286.22964 * 9 7 6 12 12 C 1.46501 * 119.99788 * 4.71203 * 11 9 7 13 13 C 1.50701 * 109.47025 * 271.11289 * 12 11 9 14 14 H 1.08000 * 119.99953 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99756 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00056 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99703 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47022 * 90.00411 * 17 15 13 19 19 H 1.48498 * 109.47077 * 209.99887 * 17 15 13 20 20 H 1.48500 * 109.47255 * 330.00267 * 17 15 13 21 21 C 1.46499 * 119.99733 * 184.71014 * 11 9 7 22 22 C 1.50703 * 109.47046 * 270.00024 * 21 11 9 23 23 C 1.38668 * 120.41781 * 270.02611 * 22 21 11 24 24 C 1.38636 * 118.42024 * 179.70948 * 23 22 21 25 25 C 1.38231 * 119.15671 * 0.50956 * 24 23 22 26 26 N 1.31847 * 120.76381 * 359.47898 * 25 24 23 27 27 C 1.31892 * 121.72709 * 0.27196 * 26 25 24 28 28 O 1.44422 * 104.80382 * 336.01767 * 7 6 5 29 29 H 1.09007 * 109.46883 * 299.99758 * 1 2 3 30 30 H 1.09001 * 109.47514 * 59.99222 * 1 2 3 31 31 H 1.08996 * 109.47577 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.46697 * 240.00742 * 2 1 3 33 33 H 1.08991 * 109.47561 * 120.00705 * 2 1 3 34 34 H 1.08997 * 110.51186 * 24.27784 * 5 3 2 35 35 H 1.08994 * 110.62836 * 261.62349 * 5 3 2 36 36 H 1.08994 * 110.50930 * 241.35481 * 6 5 3 37 37 H 1.08997 * 110.62968 * 118.70053 * 6 5 3 38 38 H 1.09004 * 109.47085 * 31.11753 * 12 11 9 39 39 H 1.08998 * 109.46697 * 151.11155 * 12 11 9 40 40 H 0.97003 * 120.00435 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.46481 * 150.00579 * 21 11 9 42 42 H 1.08996 * 109.47098 * 30.00457 * 21 11 9 43 43 H 1.07998 * 120.79440 * 359.95169 * 23 22 21 44 44 H 1.07994 * 120.41798 * 180.28284 * 24 23 22 45 45 H 1.08000 * 119.61612 * 179.74972 * 25 24 23 46 46 H 1.07998 * 119.61467 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5831 2.0057 0.8136 5 6 3.5794 1.4685 0.1261 6 6 4.0105 2.6437 -0.7797 7 6 2.6805 3.1891 -1.3453 8 1 2.3232 4.0214 -0.7391 9 6 2.8583 3.6230 -2.7776 10 8 2.3998 2.9500 -3.6764 11 7 3.5267 4.7588 -3.0596 12 6 4.1689 5.5173 -1.9832 13 6 3.1870 6.5069 -1.4110 14 1 2.1846 6.5647 -1.8089 15 6 3.5682 7.3384 -0.3793 16 7 4.7889 7.2682 0.1049 17 14 2.3508 8.5645 0.3305 18 1 1.6047 7.9312 1.4475 19 1 3.0832 9.7534 0.8358 20 1 1.3965 8.9836 -0.7273 21 6 3.6111 5.2349 -4.4425 22 6 4.8336 4.6499 -5.1015 23 6 6.0483 5.3164 -5.0453 24 6 7.1476 4.7376 -5.6606 25 6 6.9948 3.5291 -6.3142 26 7 5.8241 2.9236 -6.3474 27 6 4.7583 3.4423 -5.7689 28 8 1.7626 2.0768 -1.2672 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 4.0079 0.5327 -0.2326 35 1 3.8771 1.6528 1.1583 36 1 4.6521 2.2888 -1.5861 37 1 4.5203 3.4108 -0.1968 38 1 4.4932 4.8324 -1.1996 39 1 5.0328 6.0505 -2.3800 40 1 5.0573 7.8534 0.8305 41 1 3.6805 6.3227 -4.4486 42 1 2.7203 4.9246 -4.9886 43 1 6.1369 6.2619 -4.5311 44 1 8.1101 5.2264 -5.6328 45 1 7.8453 3.0736 -6.7995 46 1 3.8159 2.9172 -5.8175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268095739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:56 Heat of formation + Delta-G solvation = -69.940581 kcal Electronic energy + Delta-G solvation = -27617.038102 eV Core-core repulsion = 23891.659620 eV Total energy + Delta-G solvation = -3725.378482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.63373 -40.93120 -39.57022 -36.95710 -34.91166 -34.51715 -33.68124 -33.04338 -32.52358 -29.84761 -29.28797 -27.31730 -25.45022 -24.72677 -24.32201 -23.08777 -22.65263 -21.91534 -20.21549 -18.74476 -18.16428 -17.89806 -17.62421 -17.39360 -17.06860 -16.53510 -16.38711 -16.18455 -15.58301 -15.24446 -14.75372 -14.67352 -14.49971 -14.36796 -14.22834 -14.14702 -14.01242 -13.88557 -13.52632 -13.18407 -12.98104 -12.78393 -12.72832 -12.51903 -12.49820 -12.33823 -12.10137 -11.86700 -11.74417 -11.69775 -11.48088 -10.97401 -10.79791 -10.61025 -10.54020 -10.43989 -9.96409 -9.53845 -8.20588 -6.33913 0.11356 0.32434 1.41248 1.44907 1.51997 1.59940 2.05996 2.40784 2.87485 3.09067 3.10624 3.48263 3.53179 3.59371 3.83876 3.87584 3.92215 3.96748 4.08665 4.09879 4.18794 4.23978 4.33355 4.39646 4.47839 4.61395 4.66970 4.71227 4.74196 4.80703 4.86394 4.90728 4.94483 4.96959 5.07057 5.10843 5.17955 5.21088 5.27905 5.35282 5.43238 5.62608 5.75581 5.78133 5.90162 6.04897 6.46960 6.78374 7.00231 7.22985 7.38805 8.84637 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007488 B = 0.006162 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3738.513462 B = 4542.757806 C = 7336.162900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C 0.061 3.939 4 H 0.075 0.925 5 C -0.139 4.139 6 C -0.134 4.134 7 C 0.066 3.934 8 H 0.093 0.907 9 C 0.519 3.481 10 O -0.575 6.575 11 N -0.588 5.588 12 C 0.244 3.756 13 C -0.549 4.549 14 H 0.050 0.950 15 C 0.031 3.969 16 N -0.913 5.913 17 Si 0.948 3.052 18 H -0.275 1.275 19 H -0.281 1.281 20 H -0.274 1.274 21 C 0.162 3.838 22 C -0.156 4.156 23 C -0.067 4.067 24 C -0.166 4.166 25 C 0.089 3.911 26 N -0.513 5.513 27 C 0.103 3.897 28 O -0.371 6.371 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.042 0.958 39 H 0.029 0.971 40 H 0.268 0.732 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.143 0.857 44 H 0.169 0.831 45 H 0.187 0.813 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.858 -7.564 -1.364 8.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C 0.004 3.996 4 H 0.092 0.908 5 C -0.176 4.176 6 C -0.172 4.172 7 C 0.005 3.995 8 H 0.110 0.890 9 C 0.307 3.693 10 O -0.456 6.456 11 N -0.319 5.319 12 C 0.124 3.876 13 C -0.587 4.587 14 H 0.069 0.931 15 C -0.170 4.170 16 N -0.552 5.552 17 Si 0.774 3.226 18 H -0.201 1.201 19 H -0.206 1.206 20 H -0.199 1.199 21 C 0.039 3.961 22 C -0.159 4.159 23 C -0.093 4.093 24 C -0.185 4.185 25 C -0.069 4.069 26 N -0.222 5.222 27 C -0.053 4.053 28 O -0.291 6.291 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.097 0.903 43 H 0.160 0.840 44 H 0.187 0.813 45 H 0.204 0.796 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.497 -8.683 -2.280 9.318 hybrid contribution -0.484 1.944 0.934 2.210 sum 2.013 -6.739 -1.346 7.161 Atomic orbital electron populations 1.21725 0.95232 1.02230 1.01497 1.21599 0.96824 0.92936 1.03452 1.23380 0.95012 0.95455 0.85778 0.90751 1.22990 0.95194 0.98267 1.01181 1.22814 0.95569 0.99107 0.99739 1.22735 0.91685 0.91444 0.93657 0.88975 1.20468 0.77481 0.80634 0.90743 1.90570 1.51374 1.54803 1.48864 1.48124 1.52145 1.23223 1.08359 1.19364 0.92579 0.90937 0.84708 1.21643 0.98704 1.20079 1.18297 0.93123 1.25496 0.96604 0.98396 0.96525 1.69976 1.18483 1.39737 1.26957 0.85703 0.79260 0.78920 0.78712 1.20082 1.20597 1.19895 1.20202 0.95141 0.99293 0.81453 1.21244 0.97343 0.97261 1.00054 1.21814 0.91828 1.00021 0.95642 1.22486 1.00508 0.97185 0.98368 1.23366 0.95130 0.92576 0.95779 1.67709 1.00330 1.35044 1.19129 1.22635 0.97136 0.92496 0.93062 1.89171 1.57548 1.43187 1.39153 0.92074 0.94524 0.91053 0.92045 0.87785 0.89425 0.88048 0.92115 0.89235 0.94056 0.95330 0.92251 0.88478 0.90347 0.83953 0.81343 0.79638 0.84213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.85 71.98 0.71 -2.64 16 2 C -0.11 -2.53 5.56 30.60 0.17 -2.36 16 3 C 0.06 1.74 3.24 31.09 0.10 1.84 16 4 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 5 C -0.14 -3.65 6.63 31.61 0.21 -3.44 16 6 C -0.13 -4.56 5.59 31.61 0.18 -4.39 16 7 C 0.07 2.62 2.83 30.35 0.09 2.70 16 8 H 0.09 3.94 7.27 -2.39 -0.02 3.92 16 9 C 0.52 22.72 6.91 87.66 0.61 23.33 16 10 O -0.58 -27.54 15.48 15.15 0.23 -27.30 16 11 N -0.59 -24.49 2.44 -830.49 -2.03 -26.51 16 12 C 0.24 10.99 4.85 85.63 0.42 11.40 16 13 C -0.55 -27.08 8.72 25.60 0.22 -26.86 16 14 H 0.05 2.59 7.81 -2.91 -0.02 2.56 16 15 C 0.03 1.54 5.46 84.66 0.46 2.00 16 16 N -0.91 -47.04 13.29 21.45 0.28 -46.76 16 17 Si 0.95 40.09 29.54 68.60 2.03 42.11 16 18 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 19 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 21 C 0.16 5.96 5.52 85.63 0.47 6.43 16 22 C -0.16 -5.26 5.48 -19.78 -0.11 -5.37 16 23 C -0.07 -1.93 9.86 22.47 0.22 -1.71 16 24 C -0.17 -3.93 10.11 22.36 0.23 -3.71 16 25 C 0.09 2.24 11.18 84.69 0.95 3.19 16 26 N -0.51 -16.82 10.36 -195.85 -2.03 -18.84 16 27 C 0.10 3.65 10.76 84.67 0.91 4.56 16 28 O -0.37 -14.44 10.41 -130.79 -1.36 -15.80 16 29 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.04 1.00 8.01 -2.39 -0.02 0.98 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 2.06 7.87 -2.39 -0.02 2.04 16 35 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.06 2.15 7.87 -2.39 -0.02 2.13 16 37 H 0.09 3.14 6.60 -2.39 -0.02 3.12 16 38 H 0.04 1.90 4.56 -2.39 -0.01 1.89 16 39 H 0.03 1.33 8.06 -2.39 -0.02 1.31 16 40 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 41 H 0.10 3.37 8.03 -2.39 -0.02 3.35 16 42 H 0.08 2.93 7.44 -2.39 -0.02 2.91 16 43 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 44 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 45 H 0.19 3.22 8.06 -2.91 -0.02 3.19 16 46 H 0.14 5.34 7.42 -2.91 -0.02 5.32 16 Total: -1.00 -62.93 377.68 3.92 -59.01 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.96 Total: 29.11 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 5.83 Total: 4.98 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -3.77 Total: -92.12 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -1.13 Total: -43.10 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.11 kcal Total: -62.93 3.92 -59.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268095739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.926 kcal (2) G-P(sol) polarization free energy of solvation -62.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds