Wall clock time and date at job start Tue Mar 31 2020 13:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47013 * 2 1 4 4 H 1.08991 * 109.89733 * 54.48123 * 3 2 1 5 5 C 1.54382 * 109.82936 * 175.41299 * 3 2 1 6 6 C 1.55307 * 102.25233 * 140.86814 * 5 3 2 7 7 C 1.54937 * 100.94284 * 325.86785 * 6 5 3 8 8 H 1.09005 * 110.30993 * 277.53017 * 7 6 5 9 9 C 1.50703 * 110.39693 * 155.40198 * 7 6 5 10 10 O 1.21281 * 120.00062 * 253.42186 * 9 7 6 11 11 N 1.34777 * 119.99847 * 73.41240 * 9 7 6 12 12 C 1.46497 * 120.00004 * 4.33109 * 11 9 7 13 13 C 1.50699 * 109.47227 * 89.19449 * 12 11 9 14 14 H 1.08006 * 119.99715 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00021 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00184 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99836 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47258 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47369 * 120.00012 * 17 15 13 20 20 H 1.48501 * 109.46989 * 240.00089 * 17 15 13 21 21 C 1.46504 * 119.99683 * 184.33056 * 11 9 7 22 22 C 1.50705 * 109.46884 * 90.00110 * 21 11 9 23 23 C 1.38667 * 120.41629 * 90.00078 * 22 21 11 24 24 C 1.38632 * 118.42278 * 179.97438 * 23 22 21 25 25 C 1.38227 * 119.15654 * 0.02562 * 24 23 22 26 26 N 1.31856 * 120.76468 * 359.97438 * 25 24 23 27 27 C 1.31884 * 121.72614 * 359.71690 * 26 25 24 28 28 O 1.43232 * 109.83007 * 293.54378 * 3 2 1 29 29 H 1.08997 * 109.47437 * 60.00273 * 1 2 3 30 30 H 1.09008 * 109.46815 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47213 * 299.99550 * 1 2 3 32 32 H 1.09001 * 109.47601 * 240.00077 * 2 1 3 33 33 H 1.08997 * 109.47437 * 119.99727 * 2 1 3 34 34 H 1.09000 * 110.85092 * 259.06129 * 5 3 2 35 35 H 1.08998 * 110.85131 * 22.68067 * 5 3 2 36 36 H 1.08997 * 111.12476 * 207.94416 * 6 5 3 37 37 H 1.09005 * 111.12196 * 83.78612 * 6 5 3 38 38 H 1.09003 * 109.46836 * 209.19596 * 12 11 9 39 39 H 1.08998 * 109.47041 * 329.19472 * 12 11 9 40 40 H 0.97001 * 120.00127 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.46859 * 210.00293 * 21 11 9 42 42 H 1.09001 * 109.47039 * 330.00076 * 21 11 9 43 43 H 1.08000 * 120.79236 * 359.97438 * 23 22 21 44 44 H 1.07996 * 120.42308 * 179.97438 * 24 23 22 45 45 H 1.07999 * 119.61945 * 180.02562 * 25 24 23 46 46 H 1.08004 * 119.62001 * 180.31005 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6022 1.9907 0.8342 5 6 3.5794 1.4538 0.1161 6 6 3.9740 2.6074 -0.8458 7 6 2.8862 2.4636 -1.9396 8 1 3.1684 1.6906 -2.6545 9 6 2.6757 3.7774 -2.6471 10 8 1.6742 4.4274 -2.4338 11 7 3.6005 4.2303 -3.5166 12 6 4.7635 3.4026 -3.8461 13 6 4.4337 2.5174 -5.0202 14 1 3.4554 2.5662 -5.4753 15 6 5.3808 1.6453 -5.5136 16 7 6.5718 1.5856 -4.9591 17 14 4.9722 0.5486 -6.9695 18 1 3.5764 0.8055 -7.4065 19 1 5.9037 0.8430 -8.0879 20 1 5.1115 -0.8752 -6.5711 21 6 3.4427 5.5502 -4.1324 22 6 4.1106 6.5900 -3.2699 23 6 5.4436 6.9163 -3.4688 24 6 6.0162 7.8789 -2.6520 25 6 5.2451 8.4768 -1.6730 26 7 3.9800 8.1414 -1.5124 27 6 3.4008 7.2344 -2.2748 28 8 1.6945 2.0800 -1.2352 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8898 1.6765 1.1370 35 1 4.0008 0.5066 -0.2207 36 1 4.9702 2.4506 -1.2593 37 1 3.9052 3.5748 -0.3480 38 1 5.6063 4.0452 -4.1009 39 1 5.0246 2.7845 -2.9871 40 1 7.2381 0.9717 -5.3060 41 1 3.9029 5.5475 -5.1205 42 1 2.3819 5.7828 -4.2263 43 1 6.0219 6.4320 -4.2418 44 1 7.0519 8.1576 -2.7784 45 1 5.6835 9.2280 -1.0327 46 1 2.3609 6.9894 -2.1166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268095743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:02 Heat of formation + Delta-G solvation = -56.150946 kcal Electronic energy + Delta-G solvation = -27653.218699 eV Core-core repulsion = 23928.438180 eV Total energy + Delta-G solvation = -3724.780519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.22599 -39.68907 -38.13906 -35.26894 -33.46857 -33.02540 -32.24047 -31.82227 -31.27599 -28.61459 -27.52925 -25.93806 -23.93870 -23.40451 -22.85598 -21.90872 -21.48380 -20.59147 -18.56381 -17.21508 -16.96054 -16.55839 -16.17262 -15.94828 -15.35400 -15.28586 -14.98989 -14.51955 -14.22047 -13.92869 -13.74369 -13.36588 -13.17994 -13.03834 -12.82665 -12.68816 -12.63839 -12.29186 -11.93923 -11.70191 -11.62954 -11.51419 -11.32727 -11.18204 -10.95661 -10.87952 -10.77457 -10.60007 -10.46820 -10.24942 -9.86529 -9.60028 -9.47575 -9.26158 -8.95999 -8.72018 -8.55669 -7.84791 -6.28000 -4.35579 1.28518 1.49879 3.16281 3.21372 3.26030 3.32171 3.55426 4.07398 4.24027 4.41858 4.64924 4.71359 4.82745 4.99993 5.05439 5.07583 5.16951 5.22676 5.25780 5.29408 5.35465 5.40926 5.47009 5.58851 5.69158 5.76672 5.88206 5.90872 5.94917 6.01627 6.05911 6.08217 6.12884 6.16305 6.31500 6.32424 6.43270 6.44132 6.54468 6.63281 6.92450 7.05042 7.28360 7.47199 7.67585 7.94897 8.16553 8.19770 8.70560 8.93122 9.33346 10.78420 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007705 B = 0.006088 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3632.906086 B = 4597.763233 C = 7230.910421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.079 3.921 4 H 0.076 0.924 5 C -0.149 4.149 6 C -0.142 4.142 7 C 0.069 3.931 8 H 0.109 0.891 9 C 0.522 3.478 10 O -0.553 6.553 11 N -0.590 5.590 12 C 0.232 3.768 13 C -0.541 4.541 14 H 0.063 0.937 15 C 0.067 3.933 16 N -0.890 5.890 17 Si 0.895 3.105 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.161 3.839 22 C -0.145 4.145 23 C -0.059 4.059 24 C -0.178 4.178 25 C 0.088 3.912 26 N -0.491 5.491 27 C 0.115 3.885 28 O -0.352 6.352 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.043 0.957 40 H 0.265 0.735 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.137 0.863 44 H 0.131 0.869 45 H 0.150 0.850 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.107 3.450 7.603 8.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C 0.021 3.979 4 H 0.094 0.906 5 C -0.186 4.186 6 C -0.180 4.180 7 C 0.009 3.991 8 H 0.127 0.873 9 C 0.309 3.691 10 O -0.431 6.431 11 N -0.322 5.322 12 C 0.113 3.887 13 C -0.579 4.579 14 H 0.082 0.918 15 C -0.136 4.136 16 N -0.529 5.529 17 Si 0.722 3.278 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.037 3.963 22 C -0.148 4.148 23 C -0.085 4.085 24 C -0.198 4.198 25 C -0.069 4.069 26 N -0.200 5.200 27 C -0.042 4.042 28 O -0.270 6.270 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.155 0.845 44 H 0.149 0.851 45 H 0.167 0.833 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.153 4.115 8.277 9.491 hybrid contribution 0.914 -1.214 -1.484 2.124 sum -1.240 2.901 6.793 7.490 Atomic orbital electron populations 1.21696 0.95475 1.01009 1.02349 1.21907 0.96862 0.95986 1.02296 1.22774 0.94173 0.93242 0.87701 0.90648 1.23170 0.95327 0.99682 1.00455 1.23221 1.00091 0.99113 0.95565 1.22832 0.85244 0.95940 0.95082 0.87300 1.20274 0.82718 0.86658 0.79404 1.90591 1.28417 1.59174 1.64966 1.48136 1.25310 1.16341 1.42378 1.19600 0.82431 0.89851 0.96861 1.21560 0.99782 1.21337 1.15253 0.91849 1.24922 0.94729 0.96882 0.97098 1.69919 1.04369 1.37430 1.41133 0.86476 0.78742 0.80314 0.82229 1.19545 1.20811 1.20765 1.20126 1.00903 0.80591 0.94694 1.21449 0.95320 0.98768 0.99249 1.21636 0.94224 0.94657 0.97999 1.22104 1.01286 0.98690 0.97735 1.22703 0.90039 0.98119 0.96035 1.67710 1.11826 1.14490 1.25969 1.22843 1.00448 0.90801 0.90103 1.88491 1.28340 1.77682 1.32522 0.91781 0.93214 0.93128 0.91237 0.91364 0.90204 0.89991 0.88313 0.90769 0.94586 0.93918 0.92508 0.89081 0.89550 0.84507 0.85082 0.83302 0.82516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.82 37.16 0.36 -1.44 16 2 C -0.13 -1.67 5.50 -26.73 -0.15 -1.82 16 3 C 0.08 1.15 3.52 -26.01 -0.09 1.06 16 4 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 5 C -0.15 -1.99 6.54 -24.78 -0.16 -2.15 16 6 C -0.14 -2.31 6.05 -24.49 -0.15 -2.46 16 7 C 0.07 1.33 2.90 -26.86 -0.08 1.25 16 8 H 0.11 2.25 7.33 -51.93 -0.38 1.87 16 9 C 0.52 10.98 7.01 -10.98 -0.08 10.90 16 10 O -0.55 -12.68 15.92 -13.61 -0.22 -12.90 16 11 N -0.59 -11.86 2.44 -176.43 -0.43 -12.30 16 12 C 0.23 5.12 4.81 -5.20 -0.03 5.10 16 13 C -0.54 -13.36 9.10 -34.44 -0.31 -13.67 16 14 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 15 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -23.20 13.29 55.43 0.74 -22.46 16 17 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 C 0.16 2.84 5.59 -5.19 -0.03 2.81 16 22 C -0.14 -2.36 5.48 -104.48 -0.57 -2.93 16 23 C -0.06 -0.86 9.86 -39.28 -0.39 -1.25 16 24 C -0.18 -2.30 10.11 -39.44 -0.40 -2.70 16 25 C 0.09 1.19 11.18 -17.55 -0.20 0.99 16 26 N -0.49 -7.98 10.36 -13.25 -0.14 -8.12 16 27 C 0.12 1.93 10.86 -17.55 -0.19 1.74 16 28 O -0.35 -6.66 9.90 -54.39 -0.54 -7.20 16 29 H 0.06 0.91 7.88 -51.93 -0.41 0.50 16 30 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.05 7.85 -51.93 -0.41 0.64 16 36 H 0.10 1.64 6.41 -51.93 -0.33 1.31 16 37 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 38 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 39 H 0.04 0.96 4.61 -51.93 -0.24 0.72 16 40 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 41 H 0.09 1.54 8.03 -51.93 -0.42 1.12 16 42 H 0.09 1.53 7.32 -51.93 -0.38 1.15 16 43 H 0.14 1.93 8.06 -52.49 -0.42 1.50 16 44 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 46 H 0.16 2.72 7.85 -52.48 -0.41 2.31 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -29.17 379.11 -9.61 -38.78 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.17 Total: 6.59 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.55 Total: -2.97 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.17 Total: -42.87 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.76 Total: -20.10 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.17 -9.61 -38.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268095743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.371 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds