Wall clock time and date at job start Tue Mar 31 2020 13:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47070 * 2 1 4 4 C 1.53001 * 109.46904 * 119.99098 * 2 1 3 5 5 C 1.50704 * 109.47321 * 177.88288 * 4 2 1 6 6 O 1.21286 * 119.99586 * 5.59009 * 5 4 2 7 7 N 1.34775 * 120.00311 * 185.85705 * 5 4 2 8 8 C 1.46499 * 119.99991 * 359.73124 * 7 5 4 9 9 C 1.50700 * 109.47074 * 89.99443 * 8 7 5 10 10 H 1.07991 * 120.00162 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99534 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00243 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99561 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47439 * 359.97438 * 13 11 9 15 15 H 1.48507 * 109.47205 * 120.00029 * 13 11 9 16 16 H 1.48501 * 109.47187 * 239.99503 * 13 11 9 17 17 C 1.46498 * 119.99847 * 179.72693 * 7 5 4 18 18 C 1.50701 * 109.47156 * 90.00556 * 17 7 5 19 19 C 1.38675 * 120.41230 * 269.72043 * 18 17 7 20 20 C 1.38630 * 118.41610 * 179.78446 * 19 18 17 21 21 C 1.38226 * 119.16414 * 0.50611 * 20 19 18 22 22 N 1.31858 * 120.75847 * 359.73591 * 21 20 19 23 23 C 1.31884 * 121.73018 * 359.97438 * 22 21 20 24 24 C 1.52996 * 109.47348 * 239.99482 * 2 1 3 25 25 C 1.52998 * 117.50002 * 128.62172 * 24 2 1 26 26 C 1.52992 * 60.00064 * 252.51171 * 25 24 2 27 27 H 1.09002 * 109.47702 * 301.60091 * 1 2 3 28 28 H 1.09001 * 109.47305 * 61.60105 * 1 2 3 29 29 H 1.08998 * 109.47054 * 181.60157 * 1 2 3 30 30 H 0.96700 * 114.00162 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.46864 * 57.88910 * 4 2 1 32 32 H 1.09000 * 109.47830 * 297.88879 * 4 2 1 33 33 H 1.08997 * 109.47281 * 210.00197 * 8 7 5 34 34 H 1.09004 * 109.47102 * 329.99857 * 8 7 5 35 35 H 0.97001 * 119.99925 * 180.02562 * 12 11 9 36 36 H 1.09005 * 109.47199 * 210.00367 * 17 7 5 37 37 H 1.08998 * 109.47483 * 329.99906 * 17 7 5 38 38 H 1.08002 * 120.79484 * 0.02562 * 19 18 17 39 39 H 1.08002 * 120.42027 * 180.22493 * 20 19 18 40 40 H 1.08000 * 119.62385 * 179.74619 * 21 20 19 41 41 H 1.07998 * 119.61983 * 180.02562 * 23 22 21 42 42 H 1.09003 * 115.55069 * 274.32975 * 24 2 1 43 43 H 1.09004 * 117.49641 * 0.02562 * 25 24 2 44 44 H 1.08999 * 117.49884 * 145.01883 * 25 24 2 45 45 H 1.09003 * 117.49677 * 252.51148 * 26 25 24 46 46 H 1.08997 * 117.49946 * 107.48925 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5461 -0.7667 1.2235 6 8 4.1555 -0.1846 0.3513 7 7 4.2156 -1.4589 2.1664 8 6 3.4795 -2.1621 3.2199 9 6 3.1720 -3.5660 2.7665 10 1 3.4931 -3.9011 1.7914 11 6 2.4806 -4.4226 3.5968 12 7 2.0891 -4.0144 4.7841 13 14 2.1000 -6.1630 3.0351 14 1 2.6445 -6.3727 1.6695 15 1 2.7232 -7.1328 3.9713 16 1 0.6292 -6.3671 3.0177 17 6 5.6795 -1.5082 2.1377 18 6 6.2366 -0.3623 2.9425 19 6 6.5054 0.8557 2.3366 20 6 7.0129 1.8830 3.1170 21 6 7.2425 1.6573 4.4613 22 7 6.9796 0.4841 5.0026 23 6 6.4910 -0.5138 4.2922 24 6 2.0400 -0.7213 -1.2491 25 6 3.0742 0.0050 -2.1116 26 6 1.6358 -0.1497 -2.6095 27 1 -0.3634 0.5385 0.8753 28 1 -0.3634 0.4888 -0.9040 29 1 -0.3633 -1.0272 0.0287 30 1 2.9703 1.4237 -0.0004 31 1 1.6459 -1.7373 1.2686 32 1 1.7079 -0.1858 2.1389 33 1 4.0855 -2.1971 4.1252 34 1 2.5481 -1.6348 3.4264 35 1 1.6030 -4.6172 5.3683 36 1 6.0197 -2.4515 2.5650 37 1 6.0255 -1.4305 1.1070 38 1 6.3201 1.0019 1.2827 39 1 7.2305 2.8460 2.6793 40 1 7.6416 2.4511 5.0753 41 1 6.2878 -1.4605 4.7706 42 1 2.1268 -1.8046 -1.1640 43 1 3.3915 0.9966 -1.7888 44 1 3.8416 -0.6003 -2.5939 45 1 1.4570 -0.8569 -3.4195 46 1 1.0065 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270037598.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:33 Heat of formation + Delta-G solvation = -32.061996 kcal Electronic energy + Delta-G solvation = -27902.129360 eV Core-core repulsion = 24178.393416 eV Total energy + Delta-G solvation = -3723.735944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.24208 -39.66013 -37.92906 -35.25482 -34.61503 -33.16791 -32.26108 -31.80255 -31.17921 -28.19055 -27.47262 -25.63474 -23.47251 -23.12284 -22.82598 -21.97425 -21.74885 -19.65112 -18.51963 -16.99399 -16.81677 -16.64507 -16.29385 -15.99364 -15.66215 -15.23331 -15.05153 -14.49357 -14.41801 -13.91316 -13.60537 -13.29716 -13.12927 -12.78029 -12.54919 -12.46709 -12.22517 -12.12117 -11.96267 -11.77653 -11.68423 -11.46426 -11.20453 -11.04058 -11.01668 -10.85051 -10.63022 -10.29063 -10.13145 -9.88926 -9.84582 -9.60194 -9.44496 -9.25441 -9.09990 -8.74992 -8.61584 -7.87308 -6.26579 -4.35121 1.28247 1.50488 3.15906 3.23726 3.26173 3.30638 3.74096 4.13799 4.17406 4.27033 4.61550 4.65173 4.94943 4.99907 5.06306 5.12583 5.14462 5.15078 5.23519 5.28501 5.37567 5.43087 5.61148 5.68541 5.83947 5.89053 5.91252 5.94400 6.01322 6.05363 6.12163 6.13621 6.30993 6.33246 6.35245 6.42285 6.46357 6.55451 6.59314 6.63515 6.91626 7.08986 7.38545 7.67101 7.95152 8.06742 8.17092 8.23668 8.69197 8.88756 9.33660 10.80014 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007295 B = 0.006784 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3837.531548 B = 4126.612961 C = 7103.462647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.180 3.820 3 O -0.568 6.568 4 C -0.162 4.162 5 C 0.524 3.476 6 O -0.570 6.570 7 N -0.588 5.588 8 C 0.237 3.763 9 C -0.541 4.541 10 H 0.062 0.938 11 C 0.067 3.933 12 N -0.888 5.888 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.161 3.839 18 C -0.145 4.145 19 C -0.056 4.056 20 C -0.181 4.181 21 C 0.089 3.911 22 N -0.489 5.489 23 C 0.114 3.886 24 C -0.167 4.167 25 C -0.140 4.140 26 C -0.187 4.187 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.384 0.616 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.266 0.734 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.149 0.851 41 H 0.157 0.843 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.516 8.229 -7.084 11.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.139 3.861 3 O -0.380 6.380 4 C -0.201 4.201 5 C 0.314 3.686 6 O -0.453 6.453 7 N -0.317 5.317 8 C 0.117 3.883 9 C -0.579 4.579 10 H 0.080 0.920 11 C -0.137 4.137 12 N -0.525 5.525 13 Si 0.722 3.278 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.037 3.963 18 C -0.148 4.148 19 C -0.082 4.082 20 C -0.201 4.201 21 C -0.068 4.068 22 N -0.198 5.198 23 C -0.043 4.043 24 C -0.185 4.185 25 C -0.177 4.177 26 C -0.224 4.224 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.238 0.762 31 H 0.131 0.869 32 H 0.112 0.888 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.167 0.833 41 H 0.174 0.826 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.263 8.436 -6.435 11.100 hybrid contribution 0.125 -1.225 -0.835 1.488 sum 3.388 7.210 -7.270 10.785 Atomic orbital electron populations 1.21713 0.92662 1.02399 1.02407 1.20311 0.93512 0.81557 0.90769 1.86356 1.28952 1.25924 1.96799 1.22385 0.93383 1.04567 0.99803 1.20460 0.89893 0.77777 0.80519 1.90459 1.70295 1.47362 1.37207 1.48250 1.05042 1.49382 1.29048 1.19473 0.91983 0.91544 0.85265 1.21487 1.36977 0.96848 1.02625 0.91989 1.24942 0.95260 0.98791 0.94689 1.69930 1.37940 1.36363 1.08312 0.86485 0.78216 0.84151 0.78904 1.19673 1.20790 1.20772 1.20120 0.81388 0.95217 0.99610 1.21432 0.99915 0.97303 0.96140 1.21648 0.93786 0.91941 1.00845 1.22107 1.02230 1.00144 0.95643 1.22698 0.96587 0.94597 0.92917 1.67701 1.11860 1.00599 1.39630 1.22806 0.93269 0.97721 0.90526 1.22843 1.04764 0.99338 0.91595 1.22625 0.91094 1.02010 1.01944 1.22962 0.99505 1.02942 0.97026 0.92029 0.92037 0.91035 0.76215 0.86944 0.88769 0.94607 0.94371 0.92447 0.89247 0.89764 0.84414 0.85280 0.83323 0.82596 0.88046 0.88561 0.89862 0.89746 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.71 37.16 0.32 -1.53 16 2 C 0.18 2.79 0.92 -90.62 -0.08 2.70 16 3 O -0.57 -9.31 12.11 -53.60 -0.65 -9.96 16 4 C -0.16 -2.79 3.45 -27.88 -0.10 -2.88 16 5 C 0.52 9.54 7.17 -10.98 -0.08 9.46 16 6 O -0.57 -10.12 10.63 -12.82 -0.14 -10.26 16 7 N -0.59 -11.13 2.44 -176.43 -0.43 -11.56 16 8 C 0.24 5.24 4.89 -5.19 -0.03 5.22 16 9 C -0.54 -13.15 9.06 -34.44 -0.31 -13.46 16 10 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 11 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -23.57 13.29 55.43 0.74 -22.83 16 13 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 14 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 C 0.16 2.68 5.56 -5.19 -0.03 2.65 16 18 C -0.14 -2.29 5.48 -104.48 -0.57 -2.86 16 19 C -0.06 -0.80 9.86 -39.28 -0.39 -1.19 16 20 C -0.18 -2.31 10.11 -39.44 -0.40 -2.71 16 21 C 0.09 1.21 11.18 -17.55 -0.20 1.01 16 22 N -0.49 -7.92 10.36 -13.25 -0.14 -8.06 16 23 C 0.11 1.86 10.86 -17.55 -0.19 1.67 16 24 C -0.17 -2.51 4.05 -90.62 -0.37 -2.88 16 25 C -0.14 -2.00 8.04 -26.74 -0.22 -2.22 16 26 C -0.19 -2.47 9.65 -26.74 -0.26 -2.73 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.79 7.23 -51.93 -0.38 0.41 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.38 6.27 5.20 45.56 0.24 6.51 16 31 H 0.11 2.07 7.64 -51.92 -0.40 1.68 16 32 H 0.09 1.65 7.69 -51.93 -0.40 1.25 16 33 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.04 0.89 6.60 -51.93 -0.34 0.55 16 35 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.09 1.48 8.02 -51.93 -0.42 1.06 16 37 H 0.08 1.37 7.37 -51.93 -0.38 0.99 16 38 H 0.14 1.94 7.71 -52.49 -0.40 1.54 16 39 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.16 2.50 8.06 -52.49 -0.42 2.08 16 42 H 0.10 1.63 8.11 -51.93 -0.42 1.21 16 43 H 0.10 1.42 6.28 -51.93 -0.33 1.09 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.09 1.19 7.60 -51.93 -0.39 0.79 16 LS Contribution 374.54 15.07 5.64 5.64 Total: -1.00 -26.83 374.54 -9.52 -36.35 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -6.55 Total: 14.10 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -2.98 Total: -8.15 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.17 Total: -42.45 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.79 Total: -20.21 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -26.83 -9.52 -36.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270037598.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.287 kcal (2) G-P(sol) polarization free energy of solvation -26.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds