Wall clock time and date at job start Tue Mar 31 2020 13:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47070 * 2 1 4 4 C 1.53001 * 109.46904 * 119.99098 * 2 1 3 5 5 C 1.50704 * 109.47321 * 177.88288 * 4 2 1 6 6 O 1.21286 * 119.99586 * 5.59009 * 5 4 2 7 7 N 1.34775 * 120.00311 * 185.85705 * 5 4 2 8 8 C 1.46499 * 119.99991 * 359.73124 * 7 5 4 9 9 C 1.50700 * 109.47074 * 89.99443 * 8 7 5 10 10 H 1.07991 * 120.00162 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99534 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00243 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99561 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47439 * 359.97438 * 13 11 9 15 15 H 1.48507 * 109.47205 * 120.00029 * 13 11 9 16 16 H 1.48501 * 109.47187 * 239.99503 * 13 11 9 17 17 C 1.46498 * 119.99847 * 179.72693 * 7 5 4 18 18 C 1.50701 * 109.47156 * 90.00556 * 17 7 5 19 19 C 1.38675 * 120.41230 * 269.72043 * 18 17 7 20 20 C 1.38630 * 118.41610 * 179.78446 * 19 18 17 21 21 C 1.38226 * 119.16414 * 0.50611 * 20 19 18 22 22 N 1.31858 * 120.75847 * 359.73591 * 21 20 19 23 23 C 1.31884 * 121.73018 * 359.97438 * 22 21 20 24 24 C 1.52996 * 109.47348 * 239.99482 * 2 1 3 25 25 C 1.52998 * 117.50002 * 128.62172 * 24 2 1 26 26 C 1.52992 * 60.00064 * 252.51171 * 25 24 2 27 27 H 1.09002 * 109.47702 * 301.60091 * 1 2 3 28 28 H 1.09001 * 109.47305 * 61.60105 * 1 2 3 29 29 H 1.08998 * 109.47054 * 181.60157 * 1 2 3 30 30 H 0.96700 * 114.00162 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.46864 * 57.88910 * 4 2 1 32 32 H 1.09000 * 109.47830 * 297.88879 * 4 2 1 33 33 H 1.08997 * 109.47281 * 210.00197 * 8 7 5 34 34 H 1.09004 * 109.47102 * 329.99857 * 8 7 5 35 35 H 0.97001 * 119.99925 * 180.02562 * 12 11 9 36 36 H 1.09005 * 109.47199 * 210.00367 * 17 7 5 37 37 H 1.08998 * 109.47483 * 329.99906 * 17 7 5 38 38 H 1.08002 * 120.79484 * 0.02562 * 19 18 17 39 39 H 1.08002 * 120.42027 * 180.22493 * 20 19 18 40 40 H 1.08000 * 119.62385 * 179.74619 * 21 20 19 41 41 H 1.07998 * 119.61983 * 180.02562 * 23 22 21 42 42 H 1.09003 * 115.55069 * 274.32975 * 24 2 1 43 43 H 1.09004 * 117.49641 * 0.02562 * 25 24 2 44 44 H 1.08999 * 117.49884 * 145.01883 * 25 24 2 45 45 H 1.09003 * 117.49677 * 252.51148 * 26 25 24 46 46 H 1.08997 * 117.49946 * 107.48925 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5461 -0.7667 1.2235 6 8 4.1555 -0.1846 0.3513 7 7 4.2156 -1.4589 2.1664 8 6 3.4795 -2.1621 3.2199 9 6 3.1720 -3.5660 2.7665 10 1 3.4931 -3.9011 1.7914 11 6 2.4806 -4.4226 3.5968 12 7 2.0891 -4.0144 4.7841 13 14 2.1000 -6.1630 3.0351 14 1 2.6445 -6.3727 1.6695 15 1 2.7232 -7.1328 3.9713 16 1 0.6292 -6.3671 3.0177 17 6 5.6795 -1.5082 2.1377 18 6 6.2366 -0.3623 2.9425 19 6 6.5054 0.8557 2.3366 20 6 7.0129 1.8830 3.1170 21 6 7.2425 1.6573 4.4613 22 7 6.9796 0.4841 5.0026 23 6 6.4910 -0.5138 4.2922 24 6 2.0400 -0.7213 -1.2491 25 6 3.0742 0.0050 -2.1116 26 6 1.6358 -0.1497 -2.6095 27 1 -0.3634 0.5385 0.8753 28 1 -0.3634 0.4888 -0.9040 29 1 -0.3633 -1.0272 0.0287 30 1 2.9703 1.4237 -0.0004 31 1 1.6459 -1.7373 1.2686 32 1 1.7079 -0.1858 2.1389 33 1 4.0855 -2.1971 4.1252 34 1 2.5481 -1.6348 3.4264 35 1 1.6030 -4.6172 5.3683 36 1 6.0197 -2.4515 2.5650 37 1 6.0255 -1.4305 1.1070 38 1 6.3201 1.0019 1.2827 39 1 7.2305 2.8460 2.6793 40 1 7.6416 2.4511 5.0753 41 1 6.2878 -1.4605 4.7706 42 1 2.1268 -1.8046 -1.1640 43 1 3.3915 0.9966 -1.7888 44 1 3.8416 -0.6003 -2.5939 45 1 1.4570 -0.8569 -3.4195 46 1 1.0065 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270037598.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:33 Heat of formation + Delta-G solvation = -45.243390 kcal Electronic energy + Delta-G solvation = -27902.700948 eV Core-core repulsion = 24178.393416 eV Total energy + Delta-G solvation = -3724.307532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.56577 -40.87913 -39.25628 -36.76877 -35.84207 -34.83756 -33.73198 -33.01072 -32.41398 -29.52903 -29.17875 -26.99006 -25.01965 -24.35628 -24.22051 -23.11142 -22.92638 -20.90768 -19.99375 -18.68900 -18.17504 -17.91841 -17.62005 -17.39642 -16.99736 -16.61529 -16.41275 -16.09576 -15.72730 -15.14608 -14.92818 -14.54653 -14.39301 -14.24476 -13.91827 -13.74167 -13.63842 -13.44209 -13.32228 -13.19468 -12.98829 -12.83625 -12.73975 -12.71126 -12.42550 -12.15984 -12.09735 -11.88624 -11.70609 -11.30549 -11.09566 -10.77812 -10.72854 -10.60804 -10.44404 -10.38496 -9.93036 -9.45289 -8.20621 -6.35536 0.13484 0.35365 1.39940 1.44070 1.53357 1.78159 2.29683 2.44457 2.96456 3.00548 3.10098 3.37091 3.54766 3.68052 3.78607 3.88619 3.91614 3.96870 4.11375 4.12189 4.18605 4.25346 4.48232 4.50259 4.60250 4.67403 4.73337 4.76327 4.82077 4.85211 4.87269 4.90551 4.95447 5.02446 5.17007 5.20603 5.22992 5.30283 5.36593 5.38875 5.41007 5.64549 5.79155 5.80429 6.04511 6.53640 6.79772 6.85222 7.02253 7.31314 7.42113 8.84999 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007295 B = 0.006784 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3837.531548 B = 4126.612961 C = 7103.462647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.182 3.818 3 O -0.572 6.572 4 C -0.158 4.158 5 C 0.521 3.479 6 O -0.563 6.563 7 N -0.592 5.592 8 C 0.256 3.744 9 C -0.542 4.542 10 H 0.056 0.944 11 C 0.023 3.977 12 N -0.920 5.920 13 Si 0.954 3.046 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.278 1.278 17 C 0.163 3.837 18 C -0.154 4.154 19 C -0.061 4.061 20 C -0.169 4.169 21 C 0.087 3.913 22 N -0.513 5.513 23 C 0.097 3.903 24 C -0.182 4.182 25 C -0.143 4.143 26 C -0.165 4.165 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.383 0.617 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.018 0.982 34 H 0.023 0.977 35 H 0.267 0.733 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.142 0.858 39 H 0.166 0.834 40 H 0.184 0.816 41 H 0.145 0.855 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.674 9.319 -8.549 13.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.141 3.859 3 O -0.383 6.383 4 C -0.198 4.198 5 C 0.311 3.689 6 O -0.445 6.445 7 N -0.322 5.322 8 C 0.135 3.865 9 C -0.580 4.580 10 H 0.074 0.926 11 C -0.177 4.177 12 N -0.559 5.559 13 Si 0.779 3.221 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.204 1.204 17 C 0.040 3.960 18 C -0.157 4.157 19 C -0.088 4.088 20 C -0.189 4.189 21 C -0.070 4.070 22 N -0.222 5.222 23 C -0.059 4.059 24 C -0.201 4.201 25 C -0.180 4.180 26 C -0.202 4.202 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.236 0.764 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.036 0.964 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.160 0.840 39 H 0.184 0.816 40 H 0.201 0.799 41 H 0.163 0.837 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.102 0.898 45 H 0.119 0.881 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.433 9.532 -7.924 12.862 hybrid contribution 0.144 -1.468 -0.385 1.525 sum 3.577 8.064 -8.309 12.118 Atomic orbital electron populations 1.21733 0.91243 1.03044 1.03047 1.20355 0.94520 0.81029 0.90011 1.86359 1.28875 1.26311 1.96775 1.22367 0.92784 1.03867 1.00738 1.20622 0.90299 0.77639 0.80350 1.90453 1.70351 1.46976 1.36717 1.48176 1.05936 1.49479 1.28590 1.19025 0.91222 0.90843 0.85458 1.21670 1.36383 0.97802 1.02172 0.92577 1.25626 0.95253 1.02140 0.94724 1.70025 1.38908 1.37605 1.09331 0.85570 0.77993 0.80052 0.78448 1.19331 1.20680 1.20415 1.20137 0.80074 0.95724 1.00057 1.21287 1.00893 0.97684 0.95867 1.21787 0.93874 0.91823 1.01269 1.22478 1.00246 1.01004 0.95139 1.23326 0.95536 0.94316 0.93859 1.67696 1.12622 1.01574 1.40320 1.22698 0.94485 0.97865 0.90897 1.22759 1.06306 0.98606 0.92407 1.22615 0.91793 1.01616 1.01972 1.23008 0.98332 1.02986 0.95882 0.92086 0.90726 0.90391 0.76359 0.88432 0.89520 0.96385 0.95925 0.92386 0.89826 0.89218 0.83985 0.81613 0.79942 0.83747 0.89343 0.88938 0.89848 0.88118 0.88497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 8.71 71.98 0.63 -2.88 16 2 C 0.18 5.51 0.92 -10.80 -0.01 5.50 16 3 O -0.57 -18.06 12.11 -131.42 -1.59 -19.65 16 4 C -0.16 -5.51 3.45 29.85 0.10 -5.41 16 5 C 0.52 19.11 7.17 87.66 0.63 19.74 16 6 O -0.56 -19.67 10.63 14.52 0.15 -19.52 16 7 N -0.59 -22.94 2.44 -830.49 -2.03 -24.97 16 8 C 0.26 11.72 4.89 85.63 0.42 12.14 16 9 C -0.54 -26.88 9.06 25.60 0.23 -26.65 16 10 H 0.06 2.81 7.81 -2.92 -0.02 2.79 16 11 C 0.02 1.18 5.46 84.66 0.46 1.64 16 12 N -0.92 -49.77 13.29 21.45 0.28 -49.49 16 13 Si 0.95 40.68 29.54 68.60 2.03 42.71 16 14 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 15 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 17 C 0.16 5.57 5.56 85.63 0.48 6.04 16 18 C -0.15 -4.90 5.48 -19.77 -0.11 -5.00 16 19 C -0.06 -1.68 9.86 22.47 0.22 -1.46 16 20 C -0.17 -3.86 10.11 22.36 0.23 -3.64 16 21 C 0.09 2.15 11.18 84.69 0.95 3.10 16 22 N -0.51 -16.40 10.36 -195.85 -2.03 -18.43 16 23 C 0.10 3.25 10.86 84.67 0.92 4.17 16 24 C -0.18 -5.29 4.05 -10.80 -0.04 -5.33 16 25 C -0.14 -3.88 8.04 30.59 0.25 -3.63 16 26 C -0.17 -3.97 9.65 30.59 0.30 -3.67 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 1.75 7.23 -2.39 -0.02 1.73 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.38 12.11 5.20 -74.06 -0.39 11.72 16 31 H 0.10 3.70 7.64 -2.38 -0.02 3.68 16 32 H 0.09 3.13 7.69 -2.39 -0.02 3.11 16 33 H 0.02 0.89 8.07 -2.39 -0.02 0.87 16 34 H 0.02 1.11 6.60 -2.38 -0.02 1.09 16 35 H 0.27 13.75 8.31 -92.71 -0.77 12.97 16 36 H 0.08 2.88 8.02 -2.38 -0.02 2.87 16 37 H 0.09 2.92 7.37 -2.39 -0.02 2.90 16 38 H 0.14 3.77 7.71 -2.91 -0.02 3.74 16 39 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.18 3.17 8.06 -2.91 -0.02 3.14 16 41 H 0.15 4.98 8.06 -2.91 -0.02 4.95 16 42 H 0.09 2.80 8.11 -2.39 -0.02 2.78 16 43 H 0.09 2.58 6.28 -2.39 -0.01 2.57 16 44 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.10 2.24 7.60 -2.39 -0.02 2.23 16 Total: -1.00 -56.93 374.54 3.05 -53.88 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: 0.59 Total: 40.80 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 5.64 Total: -5.33 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -3.77 Total: -92.88 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -1.44 Total: -39.17 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -56.93 3.05 -53.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270037598.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.634 kcal (2) G-P(sol) polarization free energy of solvation -56.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds